Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016968

Physical Location & Seq

Genomic Coordinates Reverse (-)

23438883 .. 23439308

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g25310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAAGACGATGCTGGGCGCAGCAGGCTCCATCACAACCTTGGAAACGTTTACCTAAAGCTGAGGATGTGGGATAATGCTCGAGAACACATTGAGAAGGACACTATGATATGTAGAAGAATTGAGCATTGTCAAGGAGAGGCAAAGGGGTACATTAATCTTGGTGAATTGCATTACCTAATTCAGAAGTATGAGGAAGCTATCCATTGCTACCAAAAAGCACTTGAACTGGCAAAATCAATGGAAGATGAGGATGCTTTACTCAGGGAAATCGATCAAAATATTGAAACGGTAGAAGATGCCAGGAAAGTAATGGATGAGCTGGAGAAAGAAGAGCAGAATCTCAAAAAGCTAACACGAGACATGGCAATTGCAAGAGGCACACCATGTGTCTGCTGCAGCAAATTGCTTCTCTTGATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009987 GO:0016020 GO:0022402 GO:0022603 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0048507 GO:0048509 GO:0048532 GO:0048856 GO:0050789 GO:0050793 GO:0051301 GO:0065007 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

142

Amino Acids

16.5

Weight (kDa)

5.4

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	9 - 80	7.2e-12	Tetratricopeptide repeat
TPR_1	PF00515	48 - 78	2.7e-09	Tetratricopeptide repeat
TPR_2	PF07719	48 - 79	7.6e-08	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016968)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g25310
rosa_laevigata	RLG00000018226 RLG00000018582
rosa_roxburghii	Rroxscaffold_2G00122900 Rroxscaffold_2G00127640 Rroxscaffold_2G00128470
rosa_samantha	Rh2AG255300 Rh2AG255400 Rh2BG266100 Rh2BG269400 Rh2BG269500 Rh2CG260500 Rh2DG263500 Rh2DG263600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	48
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	227, 287
AjnI	CCWGG	1 cut(s)	302
AluBI	AGCT	4 cut(s)	61, 200, 322, 352
AluI	AGCT	4 cut(s)	61, 200, 322, 352
Alw26I	GTCTC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	81
ApeKI	GCWGC	3 cut(s)	21, 396, 399
AseI	ATTAAT	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	81
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	62
BbvI	GCAGC	3 cut(s)	33, 383, 411
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	397
BisI	GCNGC	3 cut(s)	22, 397, 400
BlsI	GCNGC	3 cut(s)	23, 398, 401
Bme1390I	CCNGG	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	2 cut(s)	244, 289
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	304
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	3 cut(s)	72, 259, 322
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	53, 277
BseNI	ACTGG	1 cut(s)	234
BseXI	GCAGC	3 cut(s)	33, 383, 411
BseYI	CCCAGC	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	354
BsoBI	CYCGRG	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	274
BspCNI	CTCAG	2 cut(s)	54, 276
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	29
BspMAI	CTGCAG	1 cut(s)	401
BspQI	GCTCTTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	274
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	62, 263
BstF5I	GGATG	3 cut(s)	72, 259, 322
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	3 cut(s)	33, 383, 411
BstV2I	GAAGAC	1 cut(s)	12
Bsu15I	ATCGAT	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	273
BtsCI	GGATG	3 cut(s)	72, 259, 322
Cac8I	GCNNGC	1 cut(s)	26
CfoI	GCGC	1 cut(s)	21
ClaI	ATCGAT	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	2 cut(s)	364, 387
CviJI	RGCY	5 cut(s)	28, 61, 200, 322, 352
CviKI_1	RGCY	5 cut(s)	28, 61, 200, 322, 352
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	62, 263
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DraIII	CACNNNGTG	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	367, 390
FaiI	YATR	5 cut(s)	107, 112, 192, 365, 388
FatI	CATG	2 cut(s)	363, 386
Fnu4HI	GCNGC	3 cut(s)	22, 397, 400
FokI	GGATG	3 cut(s)	79, 266, 329
Fsp4HI	GCNGC	3 cut(s)	22, 397, 400
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	3 cut(s)	22, 397, 400
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	367, 390
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	1 cut(s)	340
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	186, 425
Hpy188III	TCNNGA	2 cut(s)	83, 415
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	172, 374, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	2 cut(s)	62, 263
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	367, 390
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	274
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	10, 215, 250, 289, 308, 316
Lsp1109I	GCAGC	3 cut(s)	33, 383, 411
LweI	GCATC	2 cut(s)	244, 289
MaeII	ACGT	1 cut(s)	48
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	5 cut(s)	17, 129, 257, 308, 344
MfeI	CAATTG	1 cut(s)	369
MluCI	AATT	5 cut(s)	120, 167, 180, 369, 404
MnlI	CCTC	5 cut(s)	57, 133, 187, 244, 371
MseI	TTAA	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	304
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	367, 390
NlaIV	GGNNCC	1 cut(s)	29
PaeR7I	CTCGAG	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	23, 398, 401
PshBI	ATTAAT	1 cut(s)	156
Psp1406I	AACGTT	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	302
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	22, 397, 400
Sau3AI	GATC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	304
SetI	ASST	8 cut(s)	42, 51, 57, 63, 180, 202, 324, 354
SfaNI	GCATC	2 cut(s)	244, 289
SfcI	CTRYAG	1 cut(s)	397
Sfr274I	CTCGAG	1 cut(s)	81
SlaI	CTCGAG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	5 cut(s)	120, 167, 180, 369, 404
SspI	AATATT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	82, 273
TasI	AATT	5 cut(s)	120, 167, 180, 369, 404
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	3 cut(s)	21, 396, 399
VspI	ATTAAT	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	2 cut(s)	38, 310
XhoI	CTCGAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.