Rh2BG266100

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016968
Physical Location & Seq
Forward (+)
28615960 .. 28620779
4820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG266100.1

Sequence Viewer

Length: 1482 bp
ATGTTGTGGTTTTTGCAGAAAAAACATTTAATGCTTGCTGAGGAGGCTGATGACCTTATTGAGCAGCAAAGGGCCAATACCCAACTAGGTCGTACATACCATGAGATGTTTAGAAAATCCCTGGGGAAACATCAGTCAATGCAGAATGCAAAGAAATATTTCATGTCCGCTATGAAGCTTGCACAGACTATCAAGGATAATCCACCTACTAATAAGTCTTTCTTCATCAAAGAATATATTGACGCATATAGCAATATAGGATTGCTTGAACTTGATCTTGACAACCTGGAAGAGGCTGAGAAAATCTTTGCTAAAGCATTAGATATCTGCAACGAAGAAGAGGTAAATGAATACGATGAGGCCCGCGCCAGGCTCCATCACAATCTTGGAAAGGTTTACACTGAGCTGAGAATCTGGGATAATGCTCAGCAACACTTTGACAGAGACATTATGATATGCAAGCAGATTGGACATTGCAAAGGAGAGGCAAATGGGTATATCAGTCTTGGCCAGTTACTAAACCATGCACAGAAATATGAGGAGGCACTTCTTTGCTACCAGAAAGCACTTGATCTGGCGAAATCAATGGAAGATGAGGATGCCTTGGTCCATCAAATTGATGGGAGTATCAAAACTGTAAAAAGATTAGCTGAAGTAATGGATGACATGAAGAGAGAAGAGCAGAATCTCTACAAGCTAACAAGAGACATGGCCATAGCAAGAGGCACATCACATGAGCAGCTGCCGCAAATTGCTTCTCTTGATCGTCCTATGGATAGATCAAAGACTATCTCTGCCCAGTCAAAGACTCGGTTTGGTTGGTTGAAGTGGCCTTACAGGTCAAATGATGACAGTCCAGCTACTCCAAAACCTGCCAAGTATCTCCGATTGTTCAGGAAATCCACGGAAAAAGCTAATGACGGTTCTCTGAAGGCCATTGATGGAGATGACGAGGAGCTTCAGCTTTTGGGGAACCTTCTGGCAGATGATGTGGAAGAGCAGTCAGATGACGAGTTTTTCACTCCTGAGTCTACACGTCCATCTGGAGATGTTCCTGCTTATGATGACTCTGTACGCGTAGTAGTTGCATCACATGCTTCTCAGGAGATTGTAGGTTGGATCTGGCTTGTTTTCCACATTATTGTTGAGTGCATTCTCGGCTTTGTGGAGATTTATGGGATAGGGAATCCCAGGTGGATGCTCGCAGGTGCAGTTTCTTCAGTTGTAGCAGCCTATTTTTGGATTGCCGAGATTGTAGGGATGCACCGTGGACCGTTCAGATTTTGGAGACTACCATTTGTTCCAGAGATTTTCGGACTGGTGGTAGTTTTTGTGCAGTTCACGTACTTTGTGATGGGATATGTGTCATTGAGACATGATTCAGAGGAGACAGTTAGAGGACCTATTATTCGTATATGTGTTTACAGCTTGTCTTTTCAGATTTGCTTATTTCTTCAGAGATTAGGACGTAGGTTTGGTTGA

Protein Analysis

493

Amino Acids

56.79

Weight (kDa)

5.62

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 81 - 147 2e-09 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1196
Acc36I ACCTGC 2 cut(s) 880, 1196
AccI GTMKAC 1 cut(s) 1031
AccII CGCG 2 cut(s) 366, 1077
AciI CCGC 3 cut(s) 168, 364, 746
AclWI GGATC 1 cut(s) 1127
AcoI YGGCCR 2 cut(s) 508, 711
AcuI CTGAAG 5 cut(s) 672, 944, 950, 1203, 1439
AfaI GTAC 3 cut(s) 94, 1074, 1346
AfiI CCNNNNNNNGG 3 cut(s) 292, 369, 1239
AflIII ACRYGT 2 cut(s) 1034, 1075
AgsI TTSAA 2 cut(s) 269, 826
AjiI CACGTC 1 cut(s) 1037
AjnI CCWGG 4 cut(s) 120, 285, 368, 1190
Alw26I GTCTC 5 cut(s) 438, 699, 1282, 1366, 1382
AlwI GGATC 1 cut(s) 1127
AoxI GGCC 6 cut(s) 72, 360, 508, 711, 830, 933
ApeKI GCWGC 4 cut(s) 64, 739, 742, 1229
ArsI GACNNNNNNTTYG 2 cut(s) 1392, 1424
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 5 cut(s) 72, 361, 607, 1271, 1400
AvaII GGWCC 3 cut(s) 607, 1271, 1400
BalI TGGCCA 2 cut(s) 510, 713
BarI GAAGNNNNNNTAC 2 cut(s) 818, 850
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 4 cut(s) 76, 729, 751, 1241
BccI CCATC 6 cut(s) 384, 614, 618, 935, 1048, 1348
BciT130I CCWGG 4 cut(s) 122, 287, 370, 1192
BcoDI GTCTC 5 cut(s) 438, 699, 1282, 1366, 1382
BfaI CTAG 1 cut(s) 86
BfuAI ACCTGC 2 cut(s) 880, 1196
BisI GCNGC 5 cut(s) 65, 740, 743, 746, 1230
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 5 cut(s) 66, 741, 744, 747, 1231
Bme1390I CCNGG 4 cut(s) 122, 287, 370, 1192
Bme18I GGWCC 3 cut(s) 607, 1271, 1400
BmgBI CACGTC 1 cut(s) 1037
BmgT120I GGNCC 5 cut(s) 72, 361, 607, 1271, 1400
BmiI GGNNCC 2 cut(s) 374, 974
BmrFI CCNGG 4 cut(s) 122, 287, 370, 1192
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 4 cut(s) 589, 1097, 1188, 1251
BmuI ACTGGG 1 cut(s) 793
BpmI CTGGAG 1 cut(s) 1065
Bpu10I CCTNAGC 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 1344
BsaJI CCNNGG 6 cut(s) 120, 121, 603, 903, 1190, 1267
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 369, 1239
Bse1I ACTGG 3 cut(s) 511, 799, 1323
Bse3DI GCAATG 1 cut(s) 472
BseBI CCWGG 4 cut(s) 122, 287, 370, 1192
BseDI CCNNGG 6 cut(s) 120, 121, 603, 903, 1190, 1267
BseGI GGATG 4 cut(s) 604, 667, 1203, 1266
BseLI CCNNNNNNNGG 3 cut(s) 292, 369, 1239
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 7 cut(s) 30, 288, 393, 398, 440, 1017, 1115
BseNI ACTGG 3 cut(s) 511, 799, 1323
BseRI GAGGAG 4 cut(s) 56, 554, 968, 1400
BseXI GCAGC 4 cut(s) 76, 729, 751, 1241
BsgI GTGCAG 2 cut(s) 1230, 1355
Bsh1236I CGCG 2 cut(s) 366, 1077
BshFI GGCC 6 cut(s) 74, 362, 510, 713, 832, 935
BslI CCNNNNNNNGG 3 cut(s) 292, 369, 1239
BsmAI GTCTC 5 cut(s) 438, 699, 1282, 1366, 1382
BsmI GAATGC 2 cut(s) 151, 1152
BsnI GGCC 6 cut(s) 74, 362, 510, 713, 832, 935
Bsp143I GATC 5 cut(s) 274, 571, 763, 779, 1119
Bsp1720I GCTNAGC 1 cut(s) 426
BspACI CCGC 3 cut(s) 168, 364, 746
BspANI GGCC 6 cut(s) 74, 362, 510, 713, 832, 935
BspCNI CTCAG 7 cut(s) 31, 289, 394, 399, 439, 1018, 1114
BspFNI CGCG 2 cut(s) 366, 1077
BspLI GGNNCC 2 cut(s) 374, 974
BspMI ACCTGC 2 cut(s) 880, 1196
BspPI GGATC 1 cut(s) 1127
BspQI GCTCTTC 2 cut(s) 672, 990
BsrDI GCAATG 1 cut(s) 472
BsrI ACTGG 3 cut(s) 511, 799, 1323
BssECI CCNNGG 6 cut(s) 120, 121, 603, 903, 1190, 1267
BssMI GATC 5 cut(s) 274, 571, 763, 779, 1119
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 4 cut(s) 122, 287, 370, 1192
Bst4CI ACNGT 6 cut(s) 637, 854, 923, 1268, 1275, 1393
Bst6I CTCTTC 5 cut(s) 285, 333, 665, 672, 990
BstAPI GCANNNNNTGC 1 cut(s) 1094
BstBAI YACGTR 1 cut(s) 1344
BstC8I GCNNGC 5 cut(s) 36, 180, 364, 461, 1203
BstDEI CTNAG 7 cut(s) 39, 297, 402, 407, 426, 1026, 1101
BstDSI CCRYGG 2 cut(s) 903, 1267
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 4 cut(s) 604, 667, 1203, 1266
BstFNI CGCG 2 cut(s) 366, 1077
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 5 cut(s) 277, 574, 766, 782, 1122
BstMAI GTCTC 5 cut(s) 438, 699, 1282, 1366, 1382
BstMBI GATC 5 cut(s) 274, 571, 763, 779, 1119
BstMWI GCNNNNNNNGC 4 cut(s) 44, 745, 1094, 1158
BstNI CCWGG 4 cut(s) 122, 287, 370, 1192
BstNSI RCATGY 1 cut(s) 1097
BstSCI CCNGG 4 cut(s) 120, 285, 368, 1190
BstUI CGCG 2 cut(s) 366, 1077
BstV1I GCAGC 4 cut(s) 76, 729, 751, 1241
BstX2I RGATCY 1 cut(s) 1119
BstYI RGATCY 1 cut(s) 1119
BsuRI GGCC 6 cut(s) 74, 362, 510, 713, 832, 935
BtgI CCRYGG 2 cut(s) 903, 1267
BtrI CACGTC 1 cut(s) 1037
BtsCI GGATG 4 cut(s) 604, 667, 1203, 1266
BtsIMutI CAGTG 1 cut(s) 399
BveI ACCTGC 2 cut(s) 880, 1196
Cac8I GCNNGC 5 cut(s) 36, 180, 364, 461, 1203
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 5 cut(s) 72, 361, 607, 1271, 1400
CseI GACGC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 93, 1073, 1345
CviAII CATG 8 cut(s) 101, 163, 524, 667, 709, 734, 1094, 1376
CviQI GTAC 3 cut(s) 93, 1073, 1345
DdeI CTNAG 7 cut(s) 39, 297, 402, 407, 426, 1026, 1101
DpnI GATC 5 cut(s) 276, 573, 765, 781, 1121
DpnII GATC 5 cut(s) 274, 571, 763, 779, 1119
EaeI YGGCCR 2 cut(s) 508, 711
Eam1104I CTCTTC 5 cut(s) 285, 333, 665, 672, 990
EarI CTCTTC 5 cut(s) 285, 333, 665, 672, 990
Eco130I CCWWGG 1 cut(s) 603
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 3 cut(s) 607, 1271, 1400
Eco57I CTGAAG 5 cut(s) 672, 944, 950, 1203, 1439
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 1400
EcoRII CCWGG 4 cut(s) 120, 285, 368, 1190
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 8 cut(s) 104, 166, 527, 670, 712, 737, 1097, 1379
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FatI CATG 8 cut(s) 100, 162, 523, 666, 708, 733, 1093, 1375
FauI CCCGC 1 cut(s) 371
FblI GTMKAC 1 cut(s) 1031
Fnu4HI GCNGC 5 cut(s) 65, 740, 743, 746, 1230
FokI GGATG 4 cut(s) 611, 674, 1210, 1273
Fsp4HI GCNGC 5 cut(s) 65, 740, 743, 746, 1230
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 367
GluI GCNGC 5 cut(s) 65, 740, 743, 746, 1230
GsuI CTGGAG 1 cut(s) 1065
HaeIII GGCC 6 cut(s) 74, 362, 510, 713, 832, 935
HgaI GACGC 1 cut(s) 251
HhaI GCGC 1 cut(s) 368
Hin1II CATG 8 cut(s) 104, 166, 527, 670, 712, 737, 1097, 1379
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 7 cut(s) 411, 685, 808, 1028, 1067, 1186, 1379
Hpy166II GTNNAC 5 cut(s) 397, 1032, 1271, 1341, 1423
Hpy188I TCNGA 8 cut(s) 887, 930, 1006, 1280, 1316, 1384, 1440, 1458
Hpy188III TCNNGA 7 cut(s) 278, 761, 895, 1025, 1044, 1103, 1304
Hpy8I GTNNAC 5 cut(s) 397, 1032, 1271, 1341, 1423
HpyAV CCTTC 2 cut(s) 925, 986
HpyCH4III ACNGT 6 cut(s) 637, 854, 923, 1268, 1275, 1393
HpyCH4IV ACGT 3 cut(s) 1036, 1343, 1468
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 745, 1094, 1158
HpyF3I CTNAG 7 cut(s) 39, 297, 402, 407, 426, 1026, 1101
HpySE526I ACGT 3 cut(s) 1036, 1343, 1468
Hsp92II CATG 8 cut(s) 104, 166, 527, 670, 712, 737, 1097, 1379
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 5 cut(s) 274, 571, 763, 779, 1119
LguI GCTCTTC 2 cut(s) 672, 990
LmnI GCTCC 2 cut(s) 378, 955
Lsp1109I GCAGC 4 cut(s) 76, 729, 751, 1241
LweI GCATC 4 cut(s) 589, 1097, 1188, 1251
MaeI CTAG 1 cut(s) 86
MaeII ACGT 3 cut(s) 1036, 1343, 1468
MaeIII GTNAC 1 cut(s) 513
MalI GATC 5 cut(s) 276, 573, 765, 781, 1121
MboI GATC 5 cut(s) 274, 571, 763, 779, 1119
MflI RGATCY 1 cut(s) 1119
MlsI TGGCCA 2 cut(s) 510, 713
MluCI AATT 2 cut(s) 615, 750
MluI ACGCGT 1 cut(s) 1075
MluNI TGGCCA 2 cut(s) 510, 713
MlyI GAGTC 3 cut(s) 802, 1037, 1061
MmeI TCCRAC 1 cut(s) 1097
Mox20I TGGCCA 2 cut(s) 510, 713
MroXI GAANNNNTTC 1 cut(s) 158
MscI TGGCCA 2 cut(s) 510, 713
MseI TTAA 1 cut(s) 29
Msp20I TGGCCA 2 cut(s) 510, 713
MspA1I CMGCKG 1 cut(s) 742
MspR9I CCNGG 4 cut(s) 122, 287, 370, 1192
Mva1269I GAATGC 2 cut(s) 151, 1152
MvaI CCWGG 4 cut(s) 122, 287, 370, 1192
MvnI CGCG 2 cut(s) 366, 1077
MwoI GCNNNNNNNGC 4 cut(s) 44, 745, 1094, 1158
NdeII GATC 5 cut(s) 274, 571, 763, 779, 1119
NlaIII CATG 8 cut(s) 104, 166, 527, 670, 712, 737, 1097, 1379
NlaIV GGNNCC 2 cut(s) 374, 974
NmeAIII GCCGAG 2 cut(s) 1137, 1273
NspI RCATGY 1 cut(s) 1097
PaqCI CACCTGC 1 cut(s) 1196
PasI CCCWGGG 1 cut(s) 121
PciSI GCTCTTC 2 cut(s) 672, 990
PctI GAATGC 2 cut(s) 151, 1152
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 4 cut(s) 411, 685, 1186, 1379
PkrI GCNGC 5 cut(s) 66, 741, 744, 747, 1231
PleI GAGTC 3 cut(s) 802, 1036, 1061
PpsI GAGTC 3 cut(s) 802, 1036, 1061
Ppu21I YACGTR 1 cut(s) 1344
PpuMI RGGWCCY 1 cut(s) 1400
Psp5II RGGWCCY 1 cut(s) 1400
Psp6I CCWGG 4 cut(s) 120, 285, 368, 1190
PspGI CCWGG 4 cut(s) 120, 285, 368, 1190
PspN4I GGNNCC 2 cut(s) 374, 974
PspPI GGNCC 5 cut(s) 72, 361, 607, 1271, 1400
PspPPI RGGWCCY 1 cut(s) 1400
PsuI RGATCY 1 cut(s) 1119
PvuII CAGCTG 1 cut(s) 742
RsaI GTAC 3 cut(s) 94, 1074, 1346
RsaNI GTAC 3 cut(s) 93, 1073, 1345
SapI GCTCTTC 2 cut(s) 672, 990
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 5 cut(s) 65, 740, 743, 746, 1230
Sau3AI GATC 5 cut(s) 274, 571, 763, 779, 1119
Sau96I GGNCC 5 cut(s) 72, 361, 607, 1271, 1400
SchI GAGTC 3 cut(s) 802, 1037, 1061
ScrFI CCNGG 4 cut(s) 122, 287, 370, 1192
SfaNI GCATC 4 cut(s) 589, 1097, 1188, 1251
SinI GGWCC 3 cut(s) 607, 1271, 1400
Sse9I AATT 2 cut(s) 615, 750
SsiI CCGC 3 cut(s) 168, 364, 746
SspI AATATT 1 cut(s) 158
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 4 cut(s) 120, 285, 368, 1190
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 6 cut(s) 637, 854, 923, 1268, 1275, 1393
TaiI ACGT 3 cut(s) 1039, 1346, 1471
TasI AATT 2 cut(s) 615, 750
TauI GCSGC 1 cut(s) 748
TfiI GAWTC 4 cut(s) 411, 685, 1186, 1379
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 406
TseI GCWGC 4 cut(s) 64, 739, 742, 1229
TspDTI ATGAA 5 cut(s) 151, 188, 214, 363, 683
TspGWI ACGGA 1 cut(s) 920
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 3 cut(s) 607, 1271, 1400
XagI CCTNNNNNAGG 1 cut(s) 290
XceI RCATGY 1 cut(s) 1097
XcmI CCANNNNNNNNNTGG 2 cut(s) 383, 617
XmiI GTMKAC 1 cut(s) 1031
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.