Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016968

Physical Location & Seq

Genomic Coordinates Reverse (-)

29007913 .. 29009539

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGATGACATGAAGAGAGAAGAGCAGAATCTCTACAAGCTAACAAGAGACATGGCCATAGCAAGAGGCACATCACATGAGCAGCTGCAGCAAATTGCTTCTCTTGATTGTCCTATTGACAGATCAAAGACTATCTCTGCCCGGTCAAAGACTTGGTTTGGTTGGTTGAAGTGGCCTTACAGGTCAAATGATGACAGTCCAGCTACTCCAAAACCTGCCAAGTATCTCCGATTGTTCAGGAAATCCATGGAAAAAGCTAATGACCGTTCTCTGAAGGCCATTGATGGAGATGACGAGGAGCTTCAGCTTTTGGGGAACCTTCTGGCAGATGATGTGGAAGAGCAGTCAGATGACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0009934 GO:0009987 GO:0016020 GO:0022402 GO:0022603 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0048507 GO:0048509 GO:0048532 GO:0048856 GO:0050789 GO:0050793 GO:0051301 GO:0065007 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6 TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

119

Amino Acids

13.79

Weight (kDa)

4.97

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016968)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g25310
rosa_laevigata	RLG00000018226 RLG00000018582
rosa_roxburghii	Rroxscaffold_2G00122900 Rroxscaffold_2G00127640 Rroxscaffold_2G00128470
rosa_samantha	Rh2AG255300 Rh2AG255400 Rh2BG266100 Rh2BG269400 Rh2BG269500 Rh2CG260500 Rh2DG263500 Rh2DG263600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	2 cut(s)	287, 293
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	6 cut(s)	40, 85, 203, 257, 301, 307
AluI	AGCT	6 cut(s)	40, 85, 203, 257, 301, 307
Alw26I	GTCTC	1 cut(s)	42
AoxI	GGCC	3 cut(s)	54, 173, 276
ApeKI	GCWGC	3 cut(s)	82, 85, 88
AsuC2I	CCSGG	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	56
BarI	GAAGNNNNNNTAC	2 cut(s)	161, 193
BbvI	GCAGC	3 cut(s)	72, 94, 100
BccI	CCATC	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	83, 86, 89
BlsI	GCNGC	3 cut(s)	84, 87, 90
Bme1390I	CCNGG	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	10
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	3 cut(s)	72, 94, 100
BshFI	GGCC	3 cut(s)	56, 175, 278
BsiSI	CCGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	42
BsnI	GGCC	3 cut(s)	56, 175, 278
Bsp143I	GATC	1 cut(s)	122
Bsp19I	CCATGG	1 cut(s)	246
BspANI	GGCC	3 cut(s)	56, 175, 278
BspLI	GGNNCC	1 cut(s)	317
BspMAI	CTGCAG	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	223
BspQI	GCTCTTC	2 cut(s)	15, 333
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	197, 266
Bst6I	CTCTTC	3 cut(s)	8, 15, 333
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	72, 94, 100
BsuRI	GGCC	3 cut(s)	56, 175, 278
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	10
BveI	ACCTGC	1 cut(s)	223
CviAII	CATG	4 cut(s)	10, 52, 77, 247
CviJI	RGCY	9 cut(s)	40, 56, 85, 175, 203, 257, 278, 301, 307
CviKI_1	RGCY	9 cut(s)	40, 56, 85, 175, 203, 257, 278, 301, 307
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	3 cut(s)	8, 15, 333
EarI	CTCTTC	3 cut(s)	8, 15, 333
Eco130I	CCWWGG	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	287, 293
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	4 cut(s)	13, 55, 80, 250
FaiI	YATR	5 cut(s)	11, 53, 59, 78, 248
FatI	CATG	4 cut(s)	9, 51, 76, 246
Fnu4HI	GCNGC	3 cut(s)	83, 86, 89
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	83, 86, 89
GluI	GCNGC	3 cut(s)	83, 86, 89
HaeIII	GGCC	3 cut(s)	56, 175, 278
HapII	CCGG	1 cut(s)	142
Hin1II	CATG	4 cut(s)	13, 55, 80, 250
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	230, 273, 349
Hpy188III	TCNNGA	2 cut(s)	104, 238
HpyAV	CCTTC	2 cut(s)	268, 329
HpyCH4III	ACNGT	2 cut(s)	197, 266
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
Hsp92II	CATG	4 cut(s)	13, 55, 80, 250
Kzo9I	GATC	1 cut(s)	122
LguI	GCTCTTC	2 cut(s)	15, 333
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	155, 166, 213, 223, 228, 308
Lsp1109I	GCAGC	3 cut(s)	72, 94, 100
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	3 cut(s)	25, 32, 350
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	1 cut(s)	93
MluNI	TGGCCA	1 cut(s)	56
MnlI	CCTC	2 cut(s)	59, 289
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	142
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	4 cut(s)	13, 55, 80, 250
NlaIV	GGNNCC	1 cut(s)	317
PciSI	GCTCTTC	2 cut(s)	15, 333
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	84, 87, 90
PspN4I	GGNNCC	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	85
SapI	GCTCTTC	2 cut(s)	15, 333
SatI	GCNGC	3 cut(s)	83, 86, 89
Sau3AI	GATC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	142
SetI	ASST	9 cut(s)	42, 87, 185, 205, 217, 259, 303, 309, 321
SfcI	CTRYAG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	197, 266
TasI	AATT	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	82, 85, 88
TspDTI	ATGAA	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.