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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom17g25310 |
| rosa_laevigata | RLG00000018226 RLG00000018582 |
| rosa_roxburghii | Rroxscaffold_2G00122900 Rroxscaffold_2G00127640 Rroxscaffold_2G00128470 |
| rosa_samantha | Rh2AG255300 Rh2AG255400 Rh2BG266100 Rh2BG269400 Rh2BG269500 Rh2CG260500 Rh2DG263500 Rh2DG263600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 488 |
| Acc36I | ACCTGC | 2 cut(s) | 172, 488 |
| AccI | GTMKAC | 1 cut(s) | 323 |
| AccII | CGCG | 1 cut(s) | 369 |
| AciI | CCGC | 1 cut(s) | 522 |
| AclWI | GGATC | 1 cut(s) | 419 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 4 cut(s) | 236, 242, 495, 731 |
| AfaI | GTAC | 3 cut(s) | 61, 366, 638 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 531 |
| AflIII | ACRYGT | 3 cut(s) | 326, 367, 385 |
| AgsI | TTSAA | 1 cut(s) | 118 |
| AjiI | CACGTC | 1 cut(s) | 329 |
| AjnI | CCWGG | 1 cut(s) | 482 |
| AluBI | AGCT | 7 cut(s) | 34, 152, 206, 250, 256, 515, 720 |
| AluI | AGCT | 7 cut(s) | 34, 152, 206, 250, 256, 515, 720 |
| Alw26I | GTCTC | 3 cut(s) | 574, 658, 674 |
| AlwI | GGATC | 1 cut(s) | 419 |
| AoxI | GGCC | 4 cut(s) | 3, 122, 225, 451 |
| ApeKI | GCWGC | 3 cut(s) | 31, 34, 37 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 684, 716 |
| AspS9I | GGNCC | 2 cut(s) | 563, 692 |
| AsuC2I | CCSGG | 1 cut(s) | 91 |
| AvaII | GGWCC | 2 cut(s) | 563, 692 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 110, 142 |
| BbvI | GCAGC | 3 cut(s) | 21, 43, 49 |
| BccI | CCATC | 3 cut(s) | 227, 340, 640 |
| BciT130I | CCWGG | 1 cut(s) | 484 |
| BcnI | CCSGG | 1 cut(s) | 91 |
| BcoDI | GTCTC | 3 cut(s) | 574, 658, 674 |
| BfmI | CTRYAG | 2 cut(s) | 35, 516 |
| BfuAI | ACCTGC | 2 cut(s) | 172, 488 |
| BisI | GCNGC | 4 cut(s) | 32, 35, 38, 522 |
| BlsI | GCNGC | 4 cut(s) | 33, 36, 39, 523 |
| Bme1390I | CCNGG | 2 cut(s) | 91, 484 |
| Bme18I | GGWCC | 2 cut(s) | 563, 692 |
| BmgBI | CACGTC | 1 cut(s) | 329 |
| BmgT120I | GGNCC | 2 cut(s) | 563, 692 |
| BmiI | GGNNCC | 1 cut(s) | 266 |
| BmrFI | CCNGG | 2 cut(s) | 91, 484 |
| BmsI | GCATC | 4 cut(s) | 331, 389, 480, 543 |
| BpmI | CTGGAG | 1 cut(s) | 357 |
| BpuMI | CCSGG | 1 cut(s) | 91 |
| BsaAI | YACGTR | 1 cut(s) | 636 |
| BsaJI | CCNNGG | 2 cut(s) | 482, 559 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 531 |
| Bse1I | ACTGG | 1 cut(s) | 615 |
| BseBI | CCWGG | 1 cut(s) | 484 |
| BseDI | CCNNGG | 2 cut(s) | 482, 559 |
| BseGI | GGATG | 2 cut(s) | 495, 558 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 531 |
| BseMII | CTCAG | 1 cut(s) | 309 |
| BseNI | ACTGG | 1 cut(s) | 615 |
| BseRI | GAGGAG | 2 cut(s) | 260, 692 |
| BseXI | GCAGC | 3 cut(s) | 21, 43, 49 |
| BsgI | GTGCAG | 2 cut(s) | 522, 647 |
| Bsh1236I | CGCG | 1 cut(s) | 369 |
| BshFI | GGCC | 4 cut(s) | 5, 124, 227, 453 |
| BsiSI | CCGG | 1 cut(s) | 91 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 531 |
| BsmAI | GTCTC | 3 cut(s) | 574, 658, 674 |
| BsmI | GAATGC | 1 cut(s) | 444 |
| BsnI | GGCC | 4 cut(s) | 5, 124, 227, 453 |
| Bsp143I | GATC | 3 cut(s) | 55, 71, 411 |
| BspACI | CCGC | 1 cut(s) | 522 |
| BspANI | GGCC | 4 cut(s) | 5, 124, 227, 453 |
| BspCNI | CTCAG | 1 cut(s) | 310 |
| BspFNI | CGCG | 1 cut(s) | 369 |
| BspLI | GGNNCC | 1 cut(s) | 266 |
| BspMAI | CTGCAG | 1 cut(s) | 39 |
| BspMI | ACCTGC | 2 cut(s) | 172, 488 |
| BspPI | GGATC | 1 cut(s) | 419 |
| BspQI | GCTCTTC | 1 cut(s) | 282 |
| BsrI | ACTGG | 1 cut(s) | 615 |
| BssECI | CCNNGG | 2 cut(s) | 482, 559 |
| BssMI | GATC | 3 cut(s) | 55, 71, 411 |
| Bst2UI | CCWGG | 1 cut(s) | 484 |
| Bst4CI | ACNGT | 5 cut(s) | 146, 215, 560, 567, 685 |
| Bst6I | CTCTTC | 1 cut(s) | 282 |
| BstBAI | YACGTR | 1 cut(s) | 636 |
| BstC8I | GCNNGC | 1 cut(s) | 495 |
| BstDEI | CTNAG | 1 cut(s) | 318 |
| BstDSI | CCRYGG | 1 cut(s) | 559 |
| BstF5I | GGATG | 2 cut(s) | 495, 558 |
| BstFNI | CGCG | 1 cut(s) | 369 |
| BstKTI | GATC | 3 cut(s) | 58, 74, 414 |
| BstMAI | GTCTC | 3 cut(s) | 574, 658, 674 |
| BstMBI | GATC | 3 cut(s) | 55, 71, 411 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 37, 450, 521 |
| BstNI | CCWGG | 1 cut(s) | 484 |
| BstNSI | RCATGY | 1 cut(s) | 389 |
| BstSCI | CCNGG | 2 cut(s) | 89, 482 |
| BstSFI | CTRYAG | 2 cut(s) | 35, 516 |
| BstUI | CGCG | 1 cut(s) | 369 |
| BstV1I | GCAGC | 3 cut(s) | 21, 43, 49 |
| BstX2I | RGATCY | 1 cut(s) | 411 |
| BstYI | RGATCY | 1 cut(s) | 411 |
| BsuRI | GGCC | 4 cut(s) | 5, 124, 227, 453 |
| BtgI | CCRYGG | 1 cut(s) | 559 |
| BtrI | CACGTC | 1 cut(s) | 329 |
| BtsCI | GGATG | 2 cut(s) | 495, 558 |
| BveI | ACCTGC | 2 cut(s) | 172, 488 |
| Cac8I | GCNNGC | 1 cut(s) | 495 |
| Cfr13I | GGNCC | 2 cut(s) | 563, 692 |
| Csp6I | GTAC | 3 cut(s) | 60, 365, 637 |
| CviAII | CATG | 3 cut(s) | 26, 386, 668 |
| CviQI | GTAC | 3 cut(s) | 60, 365, 637 |
| DdeI | CTNAG | 1 cut(s) | 318 |
| DpnI | GATC | 3 cut(s) | 57, 73, 413 |
| DpnII | GATC | 3 cut(s) | 55, 71, 411 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 282 |
| EarI | CTCTTC | 1 cut(s) | 282 |
| Eco47I | GGWCC | 2 cut(s) | 563, 692 |
| Eco57I | CTGAAG | 4 cut(s) | 236, 242, 495, 731 |
| EcoO109I | RGGNCCY | 1 cut(s) | 692 |
| EcoRII | CCWGG | 1 cut(s) | 482 |
| FaeI | CATG | 3 cut(s) | 29, 389, 671 |
| FaiI | YATR | 9 cut(s) | 8, 27, 354, 387, 468, 654, 669, 707, 709 |
| FatI | CATG | 3 cut(s) | 25, 385, 667 |
| FblI | GTMKAC | 1 cut(s) | 323 |
| Fnu4HI | GCNGC | 4 cut(s) | 32, 35, 38, 522 |
| FokI | GGATG | 2 cut(s) | 502, 565 |
| Fsp4HI | GCNGC | 4 cut(s) | 32, 35, 38, 522 |
| GluI | GCNGC | 4 cut(s) | 32, 35, 38, 522 |
| GsuI | CTGGAG | 1 cut(s) | 357 |
| HaeIII | GGCC | 4 cut(s) | 5, 124, 227, 453 |
| HapII | CCGG | 1 cut(s) | 91 |
| Hin1II | CATG | 3 cut(s) | 29, 389, 671 |
| HinfI | GANTC | 4 cut(s) | 320, 359, 478, 671 |
| HpaII | CCGG | 1 cut(s) | 91 |
| Hpy166II | GTNNAC | 4 cut(s) | 324, 563, 633, 715 |
| Hpy188I | TCNGA | 8 cut(s) | 179, 222, 298, 572, 608, 676, 732, 750 |
| Hpy188III | TCNNGA | 5 cut(s) | 53, 187, 317, 336, 596 |
| Hpy8I | GTNNAC | 4 cut(s) | 324, 563, 633, 715 |
| HpyAV | CCTTC | 2 cut(s) | 217, 278 |
| HpyCH4III | ACNGT | 5 cut(s) | 146, 215, 560, 567, 685 |
| HpyCH4IV | ACGT | 3 cut(s) | 328, 635, 760 |
| HpyCH4V | TGCA | 6 cut(s) | 37, 380, 444, 503, 556, 628 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 37, 450, 521 |
| HpyF3I | CTNAG | 1 cut(s) | 318 |
| HpySE526I | ACGT | 3 cut(s) | 328, 635, 760 |
| Hsp92II | CATG | 3 cut(s) | 29, 389, 671 |
| Kzo9I | GATC | 3 cut(s) | 55, 71, 411 |
| LguI | GCTCTTC | 1 cut(s) | 282 |
| LmnI | GCTCC | 2 cut(s) | 247, 349 |
| Lsp1109I | GCAGC | 3 cut(s) | 21, 43, 49 |
| LweI | GCATC | 4 cut(s) | 331, 389, 480, 543 |
| MaeII | ACGT | 3 cut(s) | 328, 635, 760 |
| MalI | GATC | 3 cut(s) | 57, 73, 413 |
| MboI | GATC | 3 cut(s) | 55, 71, 411 |
| MboII | GAAGA | 3 cut(s) | 299, 501, 737 |
| MflI | RGATCY | 1 cut(s) | 411 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 1 cut(s) | 42 |
| MluI | ACGCGT | 1 cut(s) | 367 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 329, 353 |
| MnlI | CCTC | 4 cut(s) | 8, 238, 670, 683 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 2 cut(s) | 34, 515 |
| MspI | CCGG | 1 cut(s) | 91 |
| MspR9I | CCNGG | 2 cut(s) | 91, 484 |
| Mva1269I | GAATGC | 1 cut(s) | 444 |
| MvaI | CCWGG | 1 cut(s) | 484 |
| MvnI | CGCG | 1 cut(s) | 369 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 37, 450, 521 |
| NciI | CCSGG | 1 cut(s) | 91 |
| NdeII | GATC | 3 cut(s) | 55, 71, 411 |
| NlaIII | CATG | 3 cut(s) | 29, 389, 671 |
| NlaIV | GGNNCC | 1 cut(s) | 266 |
| NmeAIII | GCCGAG | 2 cut(s) | 429, 565 |
| NspI | RCATGY | 1 cut(s) | 389 |
| PaqCI | CACCTGC | 1 cut(s) | 488 |
| PciI | ACATGT | 1 cut(s) | 385 |
| PciSI | GCTCTTC | 1 cut(s) | 282 |
| PctI | GAATGC | 1 cut(s) | 444 |
| PfeI | GAWTC | 2 cut(s) | 478, 671 |
| PkrI | GCNGC | 4 cut(s) | 33, 36, 39, 523 |
| PleI | GAGTC | 2 cut(s) | 328, 353 |
| PpsI | GAGTC | 2 cut(s) | 328, 353 |
| Ppu21I | YACGTR | 1 cut(s) | 636 |
| PpuMI | RGGWCCY | 1 cut(s) | 692 |
| PscI | ACATGT | 1 cut(s) | 385 |
| Psp5II | RGGWCCY | 1 cut(s) | 692 |
| Psp6I | CCWGG | 1 cut(s) | 482 |
| PspGI | CCWGG | 1 cut(s) | 482 |
| PspN4I | GGNNCC | 1 cut(s) | 266 |
| PspPI | GGNCC | 2 cut(s) | 563, 692 |
| PspPPI | RGGWCCY | 1 cut(s) | 692 |
| PstI | CTGCAG | 1 cut(s) | 39 |
| PsuI | RGATCY | 1 cut(s) | 411 |
| PvuII | CAGCTG | 2 cut(s) | 34, 515 |
| RsaI | GTAC | 3 cut(s) | 61, 366, 638 |
| RsaNI | GTAC | 3 cut(s) | 60, 365, 637 |
| SapI | GCTCTTC | 1 cut(s) | 282 |
| SatI | GCNGC | 4 cut(s) | 32, 35, 38, 522 |
| Sau3AI | GATC | 3 cut(s) | 55, 71, 411 |
| Sau96I | GGNCC | 2 cut(s) | 563, 692 |
| SchI | GAGTC | 2 cut(s) | 329, 353 |
| ScrFI | CCNGG | 2 cut(s) | 91, 484 |
| SfaNI | GCATC | 4 cut(s) | 331, 389, 480, 543 |
| SfcI | CTRYAG | 2 cut(s) | 35, 516 |
| SinI | GGWCC | 2 cut(s) | 563, 692 |
| Sse9I | AATT | 1 cut(s) | 42 |
| SsiI | CCGC | 1 cut(s) | 522 |
| StyD4I | CCNGG | 2 cut(s) | 89, 482 |
| TaaI | ACNGT | 5 cut(s) | 146, 215, 560, 567, 685 |
| TaiI | ACGT | 3 cut(s) | 331, 638, 763 |
| TaqI | TCGA | 1 cut(s) | 66 |
| TasI | AATT | 1 cut(s) | 42 |
| TauI | GCSGC | 1 cut(s) | 524 |
| TfiI | GAWTC | 2 cut(s) | 478, 671 |
| TseI | GCWGC | 3 cut(s) | 31, 34, 37 |
| TspGWI | ACGGA | 1 cut(s) | 212 |
| VpaK11BI | GGWCC | 2 cut(s) | 563, 692 |
| XceI | RCATGY | 1 cut(s) | 389 |
| XmiI | GTMKAC | 1 cut(s) | 323 |