Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom17g25310 |
| rosa_laevigata | RLG00000018226 RLG00000018582 |
| rosa_roxburghii | Rroxscaffold_2G00122900 Rroxscaffold_2G00127640 Rroxscaffold_2G00128470 |
| rosa_samantha | Rh2AG255300 Rh2AG255400 Rh2BG266100 Rh2BG269400 Rh2BG269500 Rh2CG260500 Rh2DG263500 Rh2DG263600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 138 |
| AfaI | GTAC | 1 cut(s) | 64 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 270 |
| AgsI | TTSAA | 2 cut(s) | 239, 245 |
| AjnI | CCWGG | 2 cut(s) | 90, 263 |
| AluBI | AGCT | 1 cut(s) | 148 |
| AluI | AGCT | 1 cut(s) | 148 |
| AoxI | GGCC | 1 cut(s) | 42 |
| ApeKI | GCWGC | 1 cut(s) | 34 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 128 |
| AspS9I | GGNCC | 1 cut(s) | 42 |
| BbvCI | CCTCAGC | 1 cut(s) | 9 |
| BbvI | GCAGC | 1 cut(s) | 46 |
| BciT130I | CCWGG | 2 cut(s) | 92, 265 |
| BfaI | CTAG | 1 cut(s) | 56 |
| BisI | GCNGC | 1 cut(s) | 35 |
| BlsI | GCNGC | 1 cut(s) | 36 |
| Bme1390I | CCNGG | 2 cut(s) | 92, 265 |
| BmgT120I | GGNCC | 1 cut(s) | 42 |
| BmrFI | CCNGG | 2 cut(s) | 92, 265 |
| Bpu10I | CCTNAGC | 1 cut(s) | 9 |
| BsaJI | CCNNGG | 2 cut(s) | 90, 91 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 270 |
| BseBI | CCWGG | 2 cut(s) | 92, 265 |
| BseDI | CCNNGG | 2 cut(s) | 90, 91 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 270 |
| BseMII | CTCAG | 1 cut(s) | 266 |
| BseRI | GAGGAG | 1 cut(s) | 26 |
| BseXI | GCAGC | 1 cut(s) | 46 |
| BshFI | GGCC | 1 cut(s) | 44 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 270 |
| BsmI | GAATGC | 1 cut(s) | 121 |
| BsnI | GGCC | 1 cut(s) | 44 |
| Bsp143I | GATC | 1 cut(s) | 252 |
| BspACI | CCGC | 1 cut(s) | 138 |
| BspANI | GGCC | 1 cut(s) | 44 |
| BspCNI | CTCAG | 1 cut(s) | 267 |
| BssECI | CCNNGG | 2 cut(s) | 90, 91 |
| BssMI | GATC | 1 cut(s) | 252 |
| Bst2UI | CCWGG | 2 cut(s) | 92, 265 |
| Bst6I | CTCTTC | 1 cut(s) | 263 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 150 |
| BstDEI | CTNAG | 2 cut(s) | 9, 275 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 268 |
| BstKTI | GATC | 1 cut(s) | 255 |
| BstMBI | GATC | 1 cut(s) | 252 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 14 |
| BstNI | CCWGG | 2 cut(s) | 92, 265 |
| BstSCI | CCNGG | 2 cut(s) | 90, 263 |
| BstV1I | GCAGC | 1 cut(s) | 46 |
| BsuRI | GGCC | 1 cut(s) | 44 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 150 |
| Cfr13I | GGNCC | 1 cut(s) | 42 |
| Csp6I | GTAC | 1 cut(s) | 63 |
| CviAII | CATG | 2 cut(s) | 71, 133 |
| CviJI | RGCY | 4 cut(s) | 17, 44, 148, 274 |
| CviKI_1 | RGCY | 4 cut(s) | 17, 44, 148, 274 |
| CviQI | GTAC | 1 cut(s) | 63 |
| DdeI | CTNAG | 2 cut(s) | 9, 275 |
| DpnI | GATC | 1 cut(s) | 254 |
| DpnII | GATC | 1 cut(s) | 252 |
| Eam1104I | CTCTTC | 1 cut(s) | 263 |
| EarI | CTCTTC | 1 cut(s) | 263 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 268 |
| EcoRII | CCWGG | 2 cut(s) | 90, 263 |
| FaeI | CATG | 2 cut(s) | 74, 136 |
| FaiI | YATR | 8 cut(s) | 67, 72, 134, 143, 207, 217, 219, 227 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 176, 208 |
| FatI | CATG | 2 cut(s) | 70, 132 |
| Fnu4HI | GCNGC | 1 cut(s) | 35 |
| Fsp4HI | GCNGC | 1 cut(s) | 35 |
| FspBI | CTAG | 1 cut(s) | 56 |
| GluI | GCNGC | 1 cut(s) | 35 |
| HaeIII | GGCC | 1 cut(s) | 44 |
| Hin1II | CATG | 2 cut(s) | 74, 136 |
| HindIII | AAGCTT | 1 cut(s) | 146 |
| Hpy188III | TCNNGA | 1 cut(s) | 256 |
| HpyCH4V | TGCA | 2 cut(s) | 112, 152 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 14 |
| HpyF3I | CTNAG | 2 cut(s) | 9, 275 |
| Hsp92II | CATG | 2 cut(s) | 74, 136 |
| Kzo9I | GATC | 1 cut(s) | 252 |
| LpnPI | CCDG | 4 cut(s) | 77, 104, 250, 277 |
| Lsp1109I | GCAGC | 1 cut(s) | 46 |
| MaeI | CTAG | 1 cut(s) | 56 |
| MalI | GATC | 1 cut(s) | 254 |
| MboI | GATC | 1 cut(s) | 252 |
| MboII | GAAGA | 3 cut(s) | 133, 184, 280 |
| MnlI | CCTC | 3 cut(s) | 4, 7, 264 |
| MroXI | GAANNNNTTC | 1 cut(s) | 128 |
| MspR9I | CCNGG | 2 cut(s) | 92, 265 |
| Mva1269I | GAATGC | 1 cut(s) | 121 |
| MvaI | CCWGG | 2 cut(s) | 92, 265 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 14 |
| NdeII | GATC | 1 cut(s) | 252 |
| NlaIII | CATG | 2 cut(s) | 74, 136 |
| PasI | CCCWGGG | 1 cut(s) | 91 |
| PctI | GAATGC | 1 cut(s) | 121 |
| PdmI | GAANNNNTTC | 1 cut(s) | 128 |
| PkrI | GCNGC | 1 cut(s) | 36 |
| Psp6I | CCWGG | 2 cut(s) | 90, 263 |
| PspGI | CCWGG | 2 cut(s) | 90, 263 |
| PspPI | GGNCC | 1 cut(s) | 42 |
| RsaI | GTAC | 1 cut(s) | 64 |
| RsaNI | GTAC | 1 cut(s) | 63 |
| SatI | GCNGC | 1 cut(s) | 35 |
| Sau3AI | GATC | 1 cut(s) | 252 |
| Sau96I | GGNCC | 1 cut(s) | 42 |
| ScrFI | CCNGG | 2 cut(s) | 92, 265 |
| SetI | ASST | 5 cut(s) | 27, 61, 150, 178, 266 |
| SsiI | CCGC | 1 cut(s) | 138 |
| SspMI | CTAG | 1 cut(s) | 56 |
| StyD4I | CCNGG | 2 cut(s) | 90, 263 |
| TseI | GCWGC | 1 cut(s) | 34 |
| TspDTI | ATGAA | 3 cut(s) | 121, 158, 184 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 268 |
| XmnI | GAANNNNTTC | 1 cut(s) | 128 |
| XspI | CTAG | 1 cut(s) | 56 |