Rh2CG260500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016968
Physical Location & Seq
Forward (+)
27949773 .. 27951294
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG260500.1

Sequence Viewer

Length: 384 bp
ATGGCCATAGCAAGAGGCACATCGCATGAGCAGCTGCAGCAAATTGCTTCTCTTGATCGTCCTATCGACAGATCAAAGACTATCTCTGCCCGGTCAAAGAAGGATGAAGAAGATGACTTGGTTTGGTTGGTTGAAGACTTGAAGTGGCCTTACAGGTCAAATGATGACAGTCCAGCTACTCCAAAACCTGCCAAGTATCTCCGATTGTTCAGGAAATCTACGGAAAAAGCTAATGACGGTTCTCTGAAGGCCATTGATGGAGATGACGAGGAGCTTCAGCTTTTGGGGAACCTTCTGGCAGATGATGTGGAAGAGCAGTCAAATGACGAGTTTTTCACTCCTGAGTCTACACGTCCATCTGGAGATGCTCCTGCTTATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.31

Weight (kDa)

4.53

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 347
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 260, 266
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 2 cut(s) 134, 142
AjiI CACGTC 1 cut(s) 353
AluBI AGCT 5 cut(s) 34, 176, 230, 274, 280
AluI AGCT 5 cut(s) 34, 176, 230, 274, 280
AoxI GGCC 3 cut(s) 3, 146, 249
ApeKI GCWGC 3 cut(s) 31, 34, 37
AsuC2I CCSGG 1 cut(s) 91
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbsI GAAGAC 1 cut(s) 141
BbvI GCAGC 3 cut(s) 21, 43, 49
BccI CCATC 2 cut(s) 251, 364
BcnI CCSGG 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 3 cut(s) 32, 35, 38
BlsI GCNGC 3 cut(s) 33, 36, 39
Bme1390I CCNGG 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 3 cut(s) 21, 43, 49
BshFI GGCC 3 cut(s) 5, 148, 251
BsiSI CCGG 1 cut(s) 91
BsnI GGCC 3 cut(s) 5, 148, 251
Bsp143I GATC 2 cut(s) 55, 71
BspANI GGCC 3 cut(s) 5, 148, 251
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 290
BspMAI CTGCAG 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 306
BssMI GATC 2 cut(s) 55, 71
Bst4CI ACNGT 2 cut(s) 170, 239
Bst6I CTCTTC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 2 cut(s) 58, 74
BstMBI GATC 2 cut(s) 55, 71
BstMWI GCNNNNNNNGC 2 cut(s) 31, 37
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 21, 43, 49
BstV2I GAAGAC 1 cut(s) 141
BsuRI GGCC 3 cut(s) 5, 148, 251
BtgZI GCGATG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 353
BtsCI GGATG 1 cut(s) 109
BveI ACCTGC 1 cut(s) 196
CviAII CATG 1 cut(s) 26
CviJI RGCY 8 cut(s) 5, 34, 148, 176, 230, 251, 274, 280
CviKI_1 RGCY 8 cut(s) 5, 34, 148, 176, 230, 251, 274, 280
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 57, 73
DpnII GATC 2 cut(s) 55, 71
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco57I CTGAAG 2 cut(s) 260, 266
FaeI CATG 1 cut(s) 29
FaiI YATR 3 cut(s) 8, 27, 378
FatI CATG 1 cut(s) 25
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 3 cut(s) 32, 35, 38
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 32, 35, 38
GluI GCNGC 3 cut(s) 32, 35, 38
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 3 cut(s) 5, 148, 251
HapII CCGG 1 cut(s) 91
Hin1II CATG 1 cut(s) 29
HinfI GANTC 1 cut(s) 344
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 2 cut(s) 203, 246
Hpy188III TCNNGA 4 cut(s) 53, 211, 341, 360
Hpy8I GTNNAC 1 cut(s) 348
HpyAV CCTTC 3 cut(s) 94, 241, 302
HpyCH4III ACNGT 2 cut(s) 170, 239
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 37
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 2 cut(s) 55, 71
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 271, 373
LpnPI CCDG 8 cut(s) 104, 139, 186, 196, 201, 281, 345, 354
Lsp1109I GCAGC 3 cut(s) 21, 43, 49
LweI GCATC 1 cut(s) 355
MaeII ACGT 1 cut(s) 352
MalI GATC 2 cut(s) 57, 73
MboI GATC 2 cut(s) 55, 71
MboII GAAGA 4 cut(s) 119, 122, 146, 323
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 42
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 2 cut(s) 8, 262
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 31, 37
NciI CCSGG 1 cut(s) 91
NdeII GATC 2 cut(s) 55, 71
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 306
PkrI GCNGC 3 cut(s) 33, 36, 39
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 290
PstI CTGCAG 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 306
SatI GCNGC 3 cut(s) 32, 35, 38
Sau3AI GATC 2 cut(s) 55, 71
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 91
SetI ASST 9 cut(s) 36, 158, 178, 190, 232, 276, 282, 294, 355
SfaNI GCATC 1 cut(s) 355
SfcI CTRYAG 1 cut(s) 35
Sse9I AATT 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 2 cut(s) 170, 239
TaiI ACGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 42
TseI GCWGC 3 cut(s) 31, 34, 37
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.