pycom17g26880

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013275
Physical Location & Seq
Forward (+)
25178277 .. 25179428
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGGGGAAGGCAGGCAGTGTAGGAGTTGGAATGGATTATTCAGCAACAAGCAAATTAGCCCTAAGATGGGCAGTCGATAATCTGATCGAACAAGGAGATCGCATCGTATTAATCCACGTTGAGCCAACCAAAGCAGCTACCACAAGCAGGAAGCAGCTGTTTGAGAACACTGGATCACCTTTGATACCTCTGGAAGAACTTGTGGAGACTAATGTCTCAAAGCAGTATGGACTTACTAATGATCCAGAGGTGCTTGATATTCTTGACAAAGTGTCAAAAACTAAAGGGGCTAAGGCTGTGGCAAAGGTGTACTGGGGGGATCCAAGAGAGAAGTTGTGTGATGCAGTGCAAGATCTCAAGCTTGATTCGCTTGTCGTTGGAAGCAGGGGCTTAGGCCCTATCAAAAGGGTGTTGCTGGGCAGTGTAAGCATCTATGTGGTGACAAATGCTTCATGTCCGGTTACAGTTGTCAAGGGCTCACACAATCATCCAAACCATAAAAGCTCAAAGAAGCGATCTTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

176

Amino Acids

18.92

Weight (kDa)

9.42

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 7 - 158 4.5e-28 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013275)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03270 AT3G03270
malus_domestica MD09G1276200.v1.1 MD17G1270300.v1.1
prunus_persica Prupe.3G016200_v2.0.a1
pyrus_communis pycom09g18630 pycom17g26880
rosa_chinensis RchiOBHm_Chr3g0490231
rosa_laevigata RLG00000022893
rosa_multiflora Rmu_sc0008723.1_g000005
rosa_roxburghii Rroxscaffold_6G00393670
rosa_rugosa Rorug03G0243300 Rorug03G0243300
rosa_samantha Rh3AG291600 Rh3BG328800 Rh3CG325600 Rh3DG324900
rosa_wichuraiana Rw3G025810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 181, 236, 314, 327
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 3 cut(s) 66, 67, 147
AgsI TTSAA 1 cut(s) 523
AhdI GACNNNNNGTC 1 cut(s) 271
AluBI AGCT 4 cut(s) 137, 157, 361, 504
AluI AGCT 4 cut(s) 137, 157, 361, 504
Alw26I GTCTC 2 cut(s) 200, 220
AlwI GGATC 4 cut(s) 181, 236, 314, 327
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 134, 154
AseI ATTAAT 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 168, 451
BamHI GGATCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 479
BbvI GCAGC 2 cut(s) 146, 166
BccI CCATC 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 200, 220
BglII AGATCT 1 cut(s) 352
BisI GCNGC 2 cut(s) 135, 155
BlsI GCNGC 2 cut(s) 136, 156
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 321
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 111, 331, 438
BmuI ACTGGG 1 cut(s) 322
BoxI GACNNNNGTC 1 cut(s) 212
Bpu10I CCTNAGC 2 cut(s) 291, 391
BpuEI CTTGAG 1 cut(s) 341
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 67, 147
Bse1I ACTGG 2 cut(s) 175, 317
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 3 cut(s) 66, 67, 147
BseNI ACTGG 2 cut(s) 175, 317
BseXI GCAGC 2 cut(s) 146, 166
BseYI CCCAGC 1 cut(s) 415
BshFI GGCC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 3 cut(s) 66, 67, 147
BsmAI GTCTC 2 cut(s) 200, 220
BsnI GGCC 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 7 cut(s) 84, 97, 173, 241, 319, 352, 515
BspANI GGCC 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 4 cut(s) 181, 236, 314, 327
BsrI ACTGG 2 cut(s) 175, 317
BssMI GATC 7 cut(s) 84, 97, 173, 241, 319, 352, 515
Bst4CI ACNGT 1 cut(s) 466
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 3 cut(s) 62, 291, 391
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 7 cut(s) 87, 100, 176, 244, 322, 355, 518
BstMAI GTCTC 2 cut(s) 200, 220
BstMBI GATC 7 cut(s) 84, 97, 173, 241, 319, 352, 515
BstMWI GCNNNNNNNGC 2 cut(s) 367, 426
BstPAI GACNNNNGTC 1 cut(s) 212
BstV1I GCAGC 2 cut(s) 146, 166
BstX2I RGATCY 2 cut(s) 319, 352
BstYI RGATCY 2 cut(s) 319, 352
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 487
BtsI GCAGTG 3 cut(s) 22, 351, 427
BtsIMutI CAGTG 4 cut(s) 22, 168, 351, 427
Cac8I GCNNGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 453
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 62, 291, 391
DpnI GATC 7 cut(s) 86, 99, 175, 243, 321, 354, 517
DpnII GATC 7 cut(s) 84, 97, 173, 241, 319, 352, 515
DriI GACNNNNNGTC 1 cut(s) 271
Eam1105I GACNNNNNGTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 479
FaeI CATG 1 cut(s) 456
FaiI YATR 4 cut(s) 228, 435, 454, 498
FatI CATG 1 cut(s) 452
Fnu4HI GCNGC 2 cut(s) 135, 155
FokI GGATG 1 cut(s) 474
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 2 cut(s) 135, 155
GluI GCNGC 2 cut(s) 135, 155
GsaI CCCAGC 1 cut(s) 419
HaeIII GGCC 1 cut(s) 396
HapII CCGG 1 cut(s) 458
Hin1II CATG 1 cut(s) 456
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 458
HphI GGTGA 2 cut(s) 168, 451
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 3 cut(s) 191, 245, 263
Hpy8I GTNNAC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 344, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 426
HpyF3I CTNAG 3 cut(s) 62, 291, 391
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 456
Kzo9I GATC 7 cut(s) 84, 97, 173, 241, 319, 352, 515
LpnPI CCDG 8 cut(s) 133, 156, 176, 258, 298, 370, 401, 471
Lsp1109I GCAGC 2 cut(s) 146, 166
LweI GCATC 3 cut(s) 111, 331, 438
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 439, 460
MalI GATC 7 cut(s) 86, 99, 175, 243, 321, 354, 517
MboI GATC 7 cut(s) 84, 97, 173, 241, 319, 352, 515
MboII GAAGA 1 cut(s) 206
MflI RGATCY 2 cut(s) 319, 352
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 7, 358
MnlI CCTC 2 cut(s) 198, 241
MseI TTAA 1 cut(s) 110
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 367, 426
NdeII GATC 7 cut(s) 84, 97, 173, 241, 319, 352, 515
NlaIII CATG 1 cut(s) 456
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 2 cut(s) 136, 156
PshAI GACNNNNGTC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 395
PsuI RGATCY 2 cut(s) 319, 352
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 2 cut(s) 135, 155
Sau3AI GATC 7 cut(s) 84, 97, 173, 241, 319, 352, 515
Sau96I GGNCC 1 cut(s) 395
SduI GDGCHC 1 cut(s) 479
SetI ASST 9 cut(s) 120, 139, 159, 181, 190, 252, 309, 363, 506
SfaNI GCATC 3 cut(s) 111, 331, 438
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 53
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 75, 87
TasI AATT 1 cut(s) 53
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 4 cut(s) 22, 175, 351, 427
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 2 cut(s) 134, 154
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 1 cut(s) 441
TspRI CASTG 4 cut(s) 22, 175, 351, 427
VspI ATTAAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.