pycom2874g00050

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002874
OG0012294
Physical Location & Seq
Reverse (-)
36544 .. 43223
6680 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1026 bp
ATGCGCCTAGACCACAAACTTAAATCAAAGTTTAATTTCCTGGACGACATTCAAATGATTATGACTCAAACTTTGAGCAATTTTCAAACCAATCAATCGATACTTCTCCAGGATGTTTGCAGAAAGGTGGCTATAAATCTAATGGTTAATCAACTTTTGGGAGTGTCGAGCGATTCAGAGATTAATGAGATGGCTCAACTGTTCTCCGACTTCGTTGATGGTTGTCTCTCTTTTCCAATCAACTTGCCTGGTTTTGCATACCACACTGCCATGAAGGCAAGGGAAAAAATCATAACCAAGATAAATAGGATAACGCAAAATCACAGAGAACAAGGTGAAGTTGGCAATGGCGTCCTTGGAAGACTGTTGGAGGAAGAAAGCTTACGGGATGAAGCTGTAGCAGACTTCATTATCAACCTTCTCTTTGCTGGGAATGAAACAACTGCTAAAACAATGCTATTTGCAGTCTATTTCCTTACTCAGTGTCCCAGAGCAATGAAACAATTAGTGGATGAACAAGGCAGTTTCCGAAGCAAACCTGTTGGAGAAGAAACTCTTACATGGCAGGATTACAAAGCAATGTCTTTTACTCAATGTGTACAGGTCATTGATGAAACACTTCGACTCGGAGGAATTGCAATTTGGTTAATGAGGGAGGCAAAAGAAGACGTTGTGTACCAAGACTATGTTATCCCCAAAGGATGCTTTGTTGTTCCCTTCCTTTCAGCGGTTCATTTGGATGAAAATGTGTACAGAGAATCCCTCACTTTCAACCCATGGAGATGGATGGATCTTGAAAATCAGGAGAAAAGAAATTGGAGAACTAGCCCATTTTTTGCACCCTTTGGAGGAGGAGCCAGATTCTGTCCGGGGGCTGAGTTGGCTCGCCTTCAAATTACCCTTTTTCTCCATTACTTTGTTACAACATATAGATGGACCCAACTAAAAGAAGACCGTATGTCATTCTTTCCCTCAGCTCGTTTAGTGAATGGCTTCCAGATCTGCTTAACTAGACGGTCGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

342

Amino Acids

39.36

Weight (kDa)

6.26

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 322 2e-46 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73340
fragaria_vesca FvH4_5g18610
malus_domestica MD14G1247400.v1.1
prunus_persica Prupe.5G245500_v2.0.a1
pyrus_communis pycom2874g00050
rosa_chinensis RchiOBHm_Chr7g0176891
rosa_laevigata RLG00000005575
rosa_multiflora Rmu_sc0005310.1_g000048
rosa_roxburghii Rroxscaffold_3G00276310
rosa_rugosa Rorug06G0401400 Rorug06G0401500 Rorug06G0401500 Rorug06G0401500 Rorug06G0401600
rosa_samantha Rh7AG001100 Rh7BG001500 Rh7CG000900 Rh7DG001200
rosa_wichuraiana Rw7G000080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1019
AciI CCGC 1 cut(s) 728
AclWI GGATC 1 cut(s) 798
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 3 cut(s) 600, 677, 752
AfiI CCNNNNNNNGG 2 cut(s) 727, 848
AgsI TTSAA 5 cut(s) 53, 86, 772, 797, 893
AhdI GACNNNNNGTC 1 cut(s) 958
AjnI CCWGG 3 cut(s) 39, 108, 247
AjuI GAANNNNNNNTTGG 2 cut(s) 625, 657
AluBI AGCT 3 cut(s) 381, 395, 977
AluI AGCT 3 cut(s) 381, 395, 977
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 798
AlwNI CAGNNNCTG 1 cut(s) 864
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AseI ATTAAT 1 cut(s) 183
Asp700I GAANNNNTTC 2 cut(s) 618, 992
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 936
AsuC2I CCSGG 1 cut(s) 870
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 1 cut(s) 936
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbsI GAAGAC 3 cut(s) 367, 672, 957
BbvCI CCTCAGC 1 cut(s) 973
BccI CCATC 5 cut(s) 184, 212, 777, 781, 927
BciT130I CCWGG 3 cut(s) 41, 110, 249
BcnI CCSGG 1 cut(s) 870
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 3 cut(s) 8, 825, 1011
BfmI CTRYAG 1 cut(s) 396
BglI GCCNNNNNGGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 999
Bme1390I CCNGG 4 cut(s) 41, 110, 249, 870
Bme18I GGWCC 1 cut(s) 936
BmeRI GACNNNNNGTC 1 cut(s) 958
BmgT120I GGNCC 1 cut(s) 936
BmiI GGNNCC 2 cut(s) 856, 938
BmrFI CCNGG 4 cut(s) 41, 110, 249, 870
BmsI GCATC 1 cut(s) 692
BpiI GAAGAC 3 cut(s) 367, 672, 957
BplI GAGNNNNNCTC 2 cut(s) 747, 779
BpmI CTGGAG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 973
BpuMI CCSGG 1 cut(s) 870
Bsa29I ATCGAT 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 355, 776, 869
Bsc4I CCNNNNNNNGG 2 cut(s) 727, 848
Bse3DI GCAATG 3 cut(s) 352, 501, 585
BseBI CCWGG 3 cut(s) 41, 110, 249
BseCI ATCGAT 1 cut(s) 98
BseDI CCNNGG 3 cut(s) 355, 776, 869
BseGI GGATG 6 cut(s) 118, 394, 517, 707, 745, 792
BseLI CCNNNNNNNGG 2 cut(s) 727, 848
BseMI GCAATG 3 cut(s) 352, 501, 585
BseMII CTCAG 3 cut(s) 494, 867, 987
BseRI GAGGAG 2 cut(s) 864, 867
BseYI CCCAGC 1 cut(s) 428
Bsh1285I CGRYCG 1 cut(s) 1019
BshVI ATCGAT 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 1019
BsiSI CCGG 1 cut(s) 869
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 2 cut(s) 727, 848
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 471
Bsp1407I TGTACA 2 cut(s) 598, 750
Bsp143I GATC 2 cut(s) 790, 999
Bsp19I CCATGG 1 cut(s) 776
BspACI CCGC 1 cut(s) 728
BspCNI CTCAG 3 cut(s) 493, 868, 986
BspDI ATCGAT 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 856, 938
BspPI GGATC 1 cut(s) 798
BsrDI GCAATG 3 cut(s) 352, 501, 585
BsrGI TGTACA 2 cut(s) 598, 750
BssECI CCNNGG 3 cut(s) 355, 776, 869
BssMI GATC 2 cut(s) 790, 999
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 2 cut(s) 355, 776
Bst2UI CCWGG 3 cut(s) 41, 110, 249
Bst4CI ACNGT 4 cut(s) 201, 366, 956, 1017
BstACI GRCGYC 1 cut(s) 351
BstAUI TGTACA 2 cut(s) 598, 750
BstC8I GCNNGC 1 cut(s) 886
BstDEI CTNAG 3 cut(s) 480, 876, 973
BstDSI CCRYGG 1 cut(s) 776
BstF5I GGATG 6 cut(s) 118, 394, 517, 707, 745, 792
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 793, 1002
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 790, 999
BstMCI CGRYCG 1 cut(s) 1019
BstMWI GCNNNNNNNGC 2 cut(s) 275, 881
BstNI CCWGG 3 cut(s) 41, 110, 249
BstSCI CCNGG 4 cut(s) 39, 108, 247, 868
BstSFI CTRYAG 1 cut(s) 396
BstV2I GAAGAC 3 cut(s) 367, 672, 957
BstX2I RGATCY 2 cut(s) 790, 999
BstXI CCANNNNNNTGG 1 cut(s) 783
BstYI RGATCY 2 cut(s) 790, 999
Bsu15I ATCGAT 1 cut(s) 98
BsuTUI ATCGAT 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 776
BtsCI GGATG 6 cut(s) 118, 394, 517, 707, 745, 792
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 264, 488
Cac8I GCNNGC 1 cut(s) 886
CaiI CAGNNNCTG 1 cut(s) 864
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 936
ClaI ATCGAT 1 cut(s) 98
CseI GACGC 1 cut(s) 340
Csp6I GTAC 3 cut(s) 599, 676, 751
CviAII CATG 4 cut(s) 271, 561, 777, 1023
CviQI GTAC 3 cut(s) 599, 676, 751
DdeI CTNAG 3 cut(s) 480, 876, 973
DpnI GATC 2 cut(s) 792, 1001
DpnII GATC 2 cut(s) 790, 999
DriI GACNNNNNGTC 1 cut(s) 958
Eam1105I GACNNNNNGTC 1 cut(s) 958
Eco130I CCWWGG 2 cut(s) 355, 776
Eco47I GGWCC 1 cut(s) 936
EcoRII CCWGG 3 cut(s) 39, 108, 247
EcoT14I CCWWGG 2 cut(s) 355, 776
ErhI CCWWGG 2 cut(s) 355, 776
FaeI CATG 4 cut(s) 274, 564, 780, 1026
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 1 cut(s) 471
FatI CATG 4 cut(s) 270, 560, 776, 1022
FblI GTMKAC 1 cut(s) 1019
FokI GGATG 6 cut(s) 125, 401, 524, 714, 752, 799
FspBI CTAG 3 cut(s) 8, 825, 1011
GlaI GCGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 92
HapII CCGG 1 cut(s) 869
HgaI GACGC 1 cut(s) 340
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 4 cut(s) 274, 564, 780, 1026
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 1020
HindII GTYRAC 1 cut(s) 1020
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 5 cut(s) 64, 173, 624, 758, 861
HpaII CCGG 1 cut(s) 869
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 4 cut(s) 599, 676, 751, 1020
Hpy188I TCNGA 4 cut(s) 178, 208, 530, 629
Hpy188III TCNNGA 3 cut(s) 794, 803, 997
Hpy8I GTNNAC 4 cut(s) 599, 676, 751, 1020
HpyAV CCTTC 4 cut(s) 268, 428, 727, 899
HpyCH4III ACNGT 4 cut(s) 201, 366, 956, 1017
HpyCH4IV ACGT 1 cut(s) 669
HpyCH4V TGCA 5 cut(s) 120, 257, 464, 638, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 881
HpyF3I CTNAG 3 cut(s) 480, 876, 973
HpySE526I ACGT 1 cut(s) 669
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 4 cut(s) 274, 564, 780, 1026
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 790, 999
LmnI GCTCC 1 cut(s) 854
LweI GCATC 1 cut(s) 692
MaeI CTAG 3 cut(s) 8, 825, 1011
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 1 cut(s) 919
MalI GATC 2 cut(s) 792, 1001
MboI GATC 2 cut(s) 790, 999
MboII GAAGA 5 cut(s) 372, 386, 560, 677, 962
MflI RGATCY 2 cut(s) 790, 999
MluCI AATT 7 cut(s) 34, 79, 503, 633, 639, 814, 894
MlyI GAGTC 2 cut(s) 58, 618
MmeI TCCRAC 3 cut(s) 231, 348, 523
MnlI CCTC 8 cut(s) 364, 623, 645, 649, 773, 842, 845, 982
MroXI GAANNNNTTC 2 cut(s) 618, 992
MseI TTAA 6 cut(s) 21, 33, 147, 183, 647, 1007
MslI CAYNNNNRTG 5 cut(s) 53, 269, 738, 781, 931
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 1 cut(s) 869
MspR9I CCNGG 4 cut(s) 41, 110, 249, 870
MvaI CCWGG 3 cut(s) 41, 110, 249
MwoI GCNNNNNNNGC 2 cut(s) 275, 881
NciI CCSGG 1 cut(s) 870
NcoI CCATGG 1 cut(s) 776
NdeII GATC 2 cut(s) 790, 999
NlaIII CATG 4 cut(s) 274, 564, 780, 1026
NlaIV GGNNCC 2 cut(s) 856, 938
PdmI GAANNNNTTC 2 cut(s) 618, 992
PfeI GAWTC 3 cut(s) 173, 758, 861
PfoI TCCNGGA 2 cut(s) 39, 108
PleI GAGTC 2 cut(s) 58, 618
PpsI GAGTC 2 cut(s) 58, 618
PshBI ATTAAT 1 cut(s) 183
Psp6I CCWGG 3 cut(s) 39, 108, 247
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 3 cut(s) 39, 108, 247
PspN4I GGNNCC 2 cut(s) 856, 938
PspPI GGNCC 1 cut(s) 936
PstNI CAGNNNCTG 1 cut(s) 864
PsuI RGATCY 2 cut(s) 790, 999
RsaI GTAC 3 cut(s) 600, 677, 752
RsaNI GTAC 3 cut(s) 599, 676, 751
RseI CAYNNNNRTG 5 cut(s) 53, 269, 738, 781, 931
SalI GTCGAC 1 cut(s) 1018
SaqAI TTAA 6 cut(s) 21, 33, 147, 183, 647, 1007
Sau3AI GATC 2 cut(s) 790, 999
Sau96I GGNCC 1 cut(s) 936
SchI GAGTC 2 cut(s) 58, 618
ScrFI CCNGG 4 cut(s) 41, 110, 249, 870
SetI ASST 9 cut(s) 129, 337, 383, 397, 420, 541, 606, 672, 979
SfaNI GCATC 1 cut(s) 692
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 936
SmiMI CAYNNNNRTG 5 cut(s) 53, 269, 738, 781, 931
Sse9I AATT 7 cut(s) 34, 79, 503, 633, 639, 814, 894
SsiI CCGC 1 cut(s) 728
SspMI CTAG 3 cut(s) 8, 825, 1011
StyD4I CCNGG 4 cut(s) 39, 108, 247, 868
StyI CCWWGG 2 cut(s) 355, 776
TaaI ACNGT 4 cut(s) 201, 366, 956, 1017
TaiI ACGT 1 cut(s) 672
TaqI TCGA 4 cut(s) 98, 167, 622, 1019
TasI AATT 7 cut(s) 34, 79, 503, 633, 639, 814, 894
TatI WGTACW 2 cut(s) 598, 750
TfiI GAWTC 3 cut(s) 173, 758, 861
Tru1I TTAA 6 cut(s) 21, 33, 147, 183, 647, 1007
Tru9I TTAA 6 cut(s) 21, 33, 147, 183, 647, 1007
TscAI CASTG 2 cut(s) 271, 488
TspDTI ATGAA 9 cut(s) 287, 397, 405, 450, 512, 528, 627, 722, 756
TspRI CASTG 2 cut(s) 271, 488
VpaK11BI GGWCC 1 cut(s) 936
VspI ATTAAT 1 cut(s) 183
XmiI GTMKAC 1 cut(s) 1019
XmnI GAANNNNTTC 2 cut(s) 618, 992
XspI CTAG 3 cut(s) 8, 825, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.