pycom420g00070

PsbP domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
OG0015994
Physical Location & Seq
Reverse (-)
58830 .. 60637
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 762 bp
ATGGCCTTGCACATTTGCGATTGCTCTCCCCTCTCAAACCACCACCACCCAATTCCTCCATTCATCTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTCCCAAACCCTCCTCCAAAAAACCAATGCCCAGAGCAGCTTGTTTGCTTCTTCAAAGACGCGCTGAATCTCATCCTCCTCCAAATTACTTGAGCAGGAGAAGCCTCGGCCTCTCTGTTGTTGCCATTTTCTTAAATGGGTGTTTGCCCAACCTCCAAAACGCCATTCCTGCTCAGCAATTGGAGCTTCAGAGGTATACTGATTCCGACCAGGGTTTCACCCTCCTCCGCCCATCCTCTTGGTTAAAGGTTGATAAAGCGGGGGCAACTGTTCTGTTTGAAGAGCCAAACAATGGGAGCAATAATGTTGGCGTTGTCGTCAATCCGGTTCGCCTTACCAATCTTGGAGAGTTCGGCAGTCCTCAATTTGTTGCTGATAAGCTTATACAGGCCGAAAGGCGCAAGGAAAGTACAAAAGATGTTGTGGTTATTGGATATGCAGAGAGACCAGGCCAGGGTGGCCTTCAAGTATACGAGTTTGAGTATGAAGTCGATAGTACAAGAGGAGGGATGAAGAGGATATTTTCAGCTGCATTTGTGGCCTCAAAGAAGCTCTACCTCGTAAATATTACTTACTCAGACAAACCAGAGAGTCCTCTCGACTCCCATACAAGAACAATGCTAGAACAAGTTCTTCATTCCTTTGATGTAGCACCTTTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0009579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

254

Amino Acids

27.8

Weight (kDa)

8.65

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 94 - 249 1.5e-30 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28605
fragaria_vesca FvH4_1g24980
malus_domestica MD01G1000300.v1.1
prunus_persica Prupe.4G276300_v2.0.a1
pyrus_communis pycom420g00070
rosa_chinensis RchiOBHm_Chr2g0122611
rosa_laevigata RLG00000018695
rosa_multiflora Rmu_sc0003133.1_g000009
rosa_roxburghii Rroxscaffold_2G00121430
rosa_rugosa Rorug02G0240100
rosa_samantha Rh2AG298600 Rh2BG307400 Rh2CG285500 Rh2DG322200
rosa_wichuraiana Rw2G023740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 389
AccI GTMKAC 2 cut(s) 293, 567
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 325, 356
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 2 cut(s) 508, 595
AfiI CCNNNNNNNGG 2 cut(s) 389, 551
AgsI TTSAA 3 cut(s) 152, 377, 563
AjnI CCWGG 3 cut(s) 306, 544, 549
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 5 cut(s) 137, 283, 478, 626, 649
AluI AGCT 5 cut(s) 137, 283, 478, 626, 649
Alw26I GTCTC 1 cut(s) 535
AoxI GGCC 6 cut(s) 3, 205, 486, 547, 556, 636
ApeKI GCWGC 2 cut(s) 134, 626
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 2 cut(s) 161, 498
AsuHPI GGTGA 1 cut(s) 307
BbvI GCAGC 2 cut(s) 146, 613
BccI CCATC 1 cut(s) 337
BciT130I CCWGG 3 cut(s) 308, 546, 551
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 1 cut(s) 719
BglI GCCNNNNNGGC 1 cut(s) 555
BisI GCNGC 2 cut(s) 135, 627
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 2 cut(s) 136, 628
Bme1390I CCNGG 3 cut(s) 308, 546, 551
BmrFI CCNGG 3 cut(s) 308, 546, 551
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 3 cut(s) 202, 307, 550
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 551
BseBI CCWGG 3 cut(s) 308, 546, 551
BseDI CCNNGG 3 cut(s) 202, 307, 550
BseGI GGATG 3 cut(s) 169, 329, 612
BseLI CCNNNNNNNGG 2 cut(s) 389, 551
BseMII CTCAG 2 cut(s) 284, 687
BseRI GAGGAG 5 cut(s) 60, 100, 165, 311, 615
BseXI GCAGC 2 cut(s) 146, 613
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 6 cut(s) 5, 207, 488, 549, 558, 638
BsiSI CCGG 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 389, 551
BsmAI GTCTC 1 cut(s) 535
BsnI GGCC 6 cut(s) 5, 207, 488, 549, 558, 638
Bso31I GGTCTC 1 cut(s) 535
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 2 cut(s) 325, 356
BspANI GGCC 6 cut(s) 5, 207, 488, 549, 558, 638
BspCNI CTCAG 2 cut(s) 283, 686
BspFNI CGCG 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 535
BssECI CCNNGG 3 cut(s) 202, 307, 550
BssNAI GTATAC 2 cut(s) 294, 568
Bst1107I GTATAC 2 cut(s) 294, 568
Bst2UI CCWGG 3 cut(s) 308, 546, 551
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 372, 605
BstDEI CTNAG 2 cut(s) 270, 673
BstF5I GGATG 3 cut(s) 169, 329, 612
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 2 cut(s) 161, 498
BstMAI GTCTC 1 cut(s) 535
BstMWI GCNNNNNNNGC 5 cut(s) 198, 266, 280, 555, 635
BstNI CCWGG 3 cut(s) 308, 546, 551
BstSCI CCNGG 3 cut(s) 306, 544, 549
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 146, 613
BstXI CCANNNNNNTGG 1 cut(s) 336
BstZ17I GTATAC 2 cut(s) 294, 568
BsuRI GGCC 6 cut(s) 5, 207, 488, 549, 558, 638
BtsCI GGATG 3 cut(s) 169, 329, 612
CfoI GCGC 2 cut(s) 161, 498
CseI GACGC 1 cut(s) 165
Csp6I GTAC 2 cut(s) 507, 594
CviQI GTAC 2 cut(s) 507, 594
DdeI CTNAG 2 cut(s) 270, 673
Eam1104I CTCTTC 2 cut(s) 372, 605
EarI CTCTTC 2 cut(s) 372, 605
EciI GGCGGA 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 269
EcoRII CCWGG 3 cut(s) 306, 544, 549
FaiI YATR 7 cut(s) 294, 482, 534, 568, 582, 705, 760
FauI CCCGC 1 cut(s) 349
FblI GTMKAC 2 cut(s) 293, 567
Fnu4HI GCNGC 2 cut(s) 135, 627
FokI GGATG 3 cut(s) 156, 316, 619
Fsp4HI GCNGC 2 cut(s) 135, 627
FspBI CTAG 1 cut(s) 719
GlaI GCGC 2 cut(s) 160, 497
GluI GCNGC 2 cut(s) 135, 627
HaeIII GGCC 6 cut(s) 5, 207, 488, 549, 558, 638
HapII CCGG 1 cut(s) 422
HgaI GACGC 1 cut(s) 165
HhaI GCGC 2 cut(s) 161, 498
Hin6I GCGC 2 cut(s) 159, 496
HinP1I GCGC 2 cut(s) 159, 496
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 4 cut(s) 164, 299, 688, 698
HpaII CCGG 1 cut(s) 422
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 2 cut(s) 294, 568
Hpy188I TCNGA 3 cut(s) 288, 304, 676
Hpy188III TCNNGA 1 cut(s) 695
Hpy8I GTNNAC 2 cut(s) 294, 568
HpyAV CCTTC 2 cut(s) 84, 569
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 3 cut(s) 10, 536, 629
HpyF10VI GCNNNNNNNGC 5 cut(s) 198, 266, 280, 555, 635
HpyF3I CTNAG 2 cut(s) 270, 673
HspAI GCGC 2 cut(s) 159, 496
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 2 cut(s) 280, 393
Lsp1109I GCAGC 2 cut(s) 146, 613
MaeI CTAG 1 cut(s) 719
MfeI CAATTG 1 cut(s) 275
MluCI AATT 4 cut(s) 51, 181, 275, 461
MlyI GAGTC 2 cut(s) 692, 697
MmeI TCCRAC 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 2 cut(s) 230, 341
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 3 cut(s) 308, 546, 551
MunI CAATTG 1 cut(s) 275
MvaI CCWGG 3 cut(s) 308, 546, 551
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 5 cut(s) 198, 266, 280, 555, 635
NmeAIII GCCGAG 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 2 cut(s) 164, 299
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 2 cut(s) 136, 628
PleI GAGTC 2 cut(s) 692, 696
PpsI GAGTC 2 cut(s) 692, 696
Psp6I CCWGG 3 cut(s) 306, 544, 549
PspGI CCWGG 3 cut(s) 306, 544, 549
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 2 cut(s) 508, 595
RsaNI GTAC 2 cut(s) 507, 594
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 230, 341
SatI GCNGC 2 cut(s) 135, 627
SchI GAGTC 2 cut(s) 692, 697
ScrFI CCNGG 3 cut(s) 308, 546, 551
SfiI GGCCNNNNNGGCC 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 4 cut(s) 51, 181, 275, 461
SsiI CCGC 2 cut(s) 325, 356
SspI AATATT 1 cut(s) 664
SspMI CTAG 1 cut(s) 719
StyD4I CCNGG 3 cut(s) 306, 544, 549
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 588, 696
TasI AATT 4 cut(s) 51, 181, 275, 461
TatI WGTACW 2 cut(s) 506, 593
TfiI GAWTC 2 cut(s) 164, 299
Tru1I TTAA 2 cut(s) 230, 341
Tru9I TTAA 2 cut(s) 230, 341
TseI GCWGC 2 cut(s) 134, 626
TspDTI ATGAA 4 cut(s) 52, 597, 623, 722
Van91I CCANNNNNTGG 1 cut(s) 389
XmiI GTMKAC 2 cut(s) 293, 567
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.