Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000461

Orthogroup ID

OG0014087

Physical Location & Seq

Genomic Coordinates Reverse (-)

40820 .. 41992

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTGTGTGCCCCCCGTTGTTGAAGTCTCTTGCGGGTATTGTTTGATCTCTGGCTGTGACTCCTTCTTTCTCCCACGCTTTCCGTTGGTCAACAACCAACCACAACTCACTATAATTCTTCAAAAATCCTACAGGCTTGACGGAGTTAAGCTGTCTGGAGGGAATTTTTTTGTATCAATCTATATCTATATGTTTAGACGAATCCTTTCGTTTGATGAACCCTATCTTCAATCAAGTTCCAGCGACAATATCGCTTTTCTTGAGTCCCTTTTGAATGATTTGACCATAAGCGGAGTACAAGGTGAAGCCTATACAGAGGCTCTGGAGCTAGCGGGGCTGGTCCCCAGCCCACTTGAGCAATTTGCCATTCTCCCATTGATTCCTATGAATATAGGAAACTTGTATTTCTCATTCACAAATCCTTCTTTGTTTATGCTGCTAACTCTCAGTTTGGTCCTACTTCTGGTTCATTTTGTTACTAAAAACGGAGGAGGAAACTCAGTACCAAATGCTTGGCAATCCTCGGTAGAGCTTATTTATGATTTCGTGCTGAACCTGGTAAACGAACAAATAGGTGGTCTTTCCGGAAATGTTAAACAAAAGTTTTTCCCTCGCATCTCGGTCACTTTTACTTTTTTGTTATTTCGTAATCCCCAGGGTATGATACCTTATAGCTTCACAGTTACAAGTCATTTTCTCATTACTTTGGGTCTCTCATTTTCTATTTTTATTGGCATTACTATAGTGGCATTTCAAAGAAATGGGCTTCATTTTTTAAGCTTCTCCTTACCCGCAGGAGTCCCACTGCCGTTAGCACCCTTTTTAGTACTCCTTGAGCTAATTCCTCATTGTTTTCGCGCATTAAGCTCAGGAATACGTTTATTTGCTAATATGATGGCCGGTCATAGTTCAGTAAAGATTTTAAGTGGGTTCGCTTGGACTATGCTATGTATGAATGATCTTTTATTTTTTATAGGAGATCCTGGTCCTTTATTTATAGTTCTTGCATTAACCGGTCCGGAATTAGGTGTAGCTATATCACAAGCTCATGTTTCTACGATCTCAATCTGTATTTACTTGAATGATGCTACAAATCTCCATCAAAGCGGTTATTTATTTATAATTGAACAAAAGCGAGGTTCTGAAAGAAAGAAGGTCCATTTTTCCACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_A

Protein Analysis

391

Amino Acids

43.07

Weight (kDa)

6.44

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_A	PF00119	143 - 361	8.9e-42	ATP synthase A chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07741 ATMG00410 ATMG01170
malus_domestica	MD15G1429600.v1.1
pyrus_communis	pycom461g00070
rosa_chinensis	RchiOBHm_Chr6g0256721 RchiOBHm_Chr7g0231141 RchiOBHm_MTg0498771
rosa_laevigata	RLG00000000437 RLG00000000472 RLG00000000497 RLG00000018733
rosa_roxburghii	Rroxscaffold_2G00119300
rosa_samantha	Rh2BG168400 Rh2DG167300 Rh6AG048600
rosa_wichuraiana	Rw7G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
AccII	CGCG	1 cut(s)	858
AccIII	TCCGGA	2 cut(s)	584, 1018
AciI	CCGC	5 cut(s)	33, 291, 332, 792, 1107
AclWI	GGATC	1 cut(s)	974
AcoI	YGGCCR	1 cut(s)	897
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	3 cut(s)	297, 504, 828
AfiI	CCNNNNNNNGG	2 cut(s)	463, 1025
AgeI	ACCGGT	1 cut(s)	1013
AgsI	TTSAA	7 cut(s)	23, 122, 230, 274, 755, 1081, 1127
AjnI	CCWGG	3 cut(s)	555, 654, 982
AluBI	AGCT	9 cut(s)	151, 328, 532, 675, 780, 838, 867, 1034, 1046
AluI	AGCT	9 cut(s)	151, 328, 532, 675, 780, 838, 867, 1034, 1046
Alw26I	GTCTC	2 cut(s)	31, 716
AlwI	GGATC	1 cut(s)	974
Aor13HI	TCCGGA	2 cut(s)	584, 1018
AoxI	GGCC	1 cut(s)	897
ApeKI	GCWGC	1 cut(s)	436
ApoI	RAATTY	1 cut(s)	163
ArsI	GACNNNNNNTTYG	2 cut(s)	562, 594
AsiGI	ACCGGT	1 cut(s)	1013
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	860
AspS9I	GGNCC	5 cut(s)	340, 454, 986, 1016, 1156
AsuHPI	GGTGA	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	328
AvaII	GGWCC	5 cut(s)	340, 454, 986, 1016, 1156
BaeGI	GKGCMC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	2 cut(s)	889, 1107
BceAI	ACGGC	1 cut(s)	793
BciT130I	CCWGG	3 cut(s)	557, 656, 984
BcoDI	GTCTC	2 cut(s)	31, 716
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	2 cut(s)	130, 741
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
BmcAI	AGTACT	1 cut(s)	828
Bme1390I	CCNGG	3 cut(s)	557, 656, 984
Bme18I	GGWCC	5 cut(s)	340, 454, 986, 1016, 1156
BmgT120I	GGNCC	5 cut(s)	340, 454, 986, 1016, 1156
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	3 cut(s)	557, 656, 984
BmsI	GCATC	2 cut(s)	624, 1075
BmtI	GCTAGC	1 cut(s)	332
BpmI	CTGGAG	2 cut(s)	177, 344
Bpu10I	CCTNAGC	1 cut(s)	868
BpuEI	CTTGAG	3 cut(s)	281, 374, 854
BsaAI	YACGTR	1 cut(s)	1170
BsaBI	GATNNNNATC	1 cut(s)	1064
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	3 cut(s)	522, 654, 655
BsaWI	WCCGGW	3 cut(s)	584, 1013, 1018
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 1025
Bse118I	RCCGGY	2 cut(s)	899, 1013
Bse8I	GATNNNNATC	1 cut(s)	1064
BseAI	TCCGGA	2 cut(s)	584, 1018
BseBI	CCWGG	3 cut(s)	557, 656, 984
BseDI	CCNNGG	3 cut(s)	522, 654, 655
BseJI	GATNNNNATC	1 cut(s)	1064
BseLI	CCNNNNNNNGG	2 cut(s)	463, 1025
BseMII	CTCAG	3 cut(s)	460, 513, 882
BseRI	GAGGAG	1 cut(s)	504
BseSI	GKGCMC	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	858
BshFI	GGCC	1 cut(s)	899
BshTI	ACCGGT	1 cut(s)	1013
BsiSI	CCGG	4 cut(s)	585, 900, 1014, 1019
BslFI	GGGAC	3 cut(s)	250, 326, 785
BslI	CCNNNNNNNGG	2 cut(s)	463, 1025
BsmAI	GTCTC	2 cut(s)	31, 716
BsmFI	GGGAC	3 cut(s)	250, 326, 785
BsnI	GGCC	1 cut(s)	899
Bso31I	GGTCTC	1 cut(s)	716
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp13I	TCCGGA	2 cut(s)	584, 1018
Bsp143I	GATC	4 cut(s)	45, 958, 979, 1059
BspACI	CCGC	5 cut(s)	33, 291, 332, 792, 1107
BspANI	GGCC	1 cut(s)	899
BspCNI	CTCAG	3 cut(s)	459, 512, 881
BspEI	TCCGGA	2 cut(s)	584, 1018
BspFNI	CGCG	1 cut(s)	858
BspLI	GGNNCC	1 cut(s)	342
BspOI	GCTAGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	974
BspTNI	GGTCTC	1 cut(s)	716
BsrFI	RCCGGY	2 cut(s)	899, 1013
BssAI	RCCGGY	2 cut(s)	899, 1013
BssECI	CCNNGG	3 cut(s)	522, 654, 655
BssMI	GATC	4 cut(s)	45, 958, 979, 1059
Bst2UI	CCWGG	3 cut(s)	557, 656, 984
Bst4CI	ACNGT	1 cut(s)	682
BstBAI	YACGTR	1 cut(s)	1170
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	446, 499, 868
BstFNI	CGCG	1 cut(s)	858
BstHHI	GCGC	1 cut(s)	860
BstKTI	GATC	4 cut(s)	48, 961, 982, 1062
BstMAI	GTCTC	2 cut(s)	31, 716
BstMBI	GATC	4 cut(s)	45, 958, 979, 1059
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 864
BstNI	CCWGG	3 cut(s)	557, 656, 984
BstSCI	CCNGG	3 cut(s)	555, 654, 982
BstSFI	CTRYAG	2 cut(s)	130, 741
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	979
BstXI	CCANNNNNNTGG	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	979
BsuRI	GGCC	1 cut(s)	899
BtsI	GCAGTG	1 cut(s)	803
BtsIMutI	CAGTG	1 cut(s)	803
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	1 cut(s)	860
Cfr10I	RCCGGY	2 cut(s)	899, 1013
Cfr13I	GGNCC	5 cut(s)	340, 454, 986, 1016, 1156
CpoI	CGGWCCG	1 cut(s)	1016
CsiI	ACCWGGT	1 cut(s)	555
Csp6I	GTAC	3 cut(s)	296, 503, 827
CspAI	ACCGGT	1 cut(s)	1013
CspI	CGGWCCG	1 cut(s)	1016
CviAII	CATG	1 cut(s)	1049
CviQI	GTAC	3 cut(s)	296, 503, 827
DdeI	CTNAG	3 cut(s)	446, 499, 868
DpnI	GATC	4 cut(s)	47, 960, 981, 1061
DpnII	GATC	4 cut(s)	45, 958, 979, 1059
EaeI	YGGCCR	1 cut(s)	897
Eco31I	GGTCTC	1 cut(s)	716
Eco47I	GGWCC	5 cut(s)	340, 454, 986, 1016, 1156
EcoRII	CCWGG	3 cut(s)	555, 654, 982
FaeI	CATG	1 cut(s)	1052
FaqI	GGGAC	3 cut(s)	250, 326, 785
FatI	CATG	1 cut(s)	1048
FauI	CCCGC	3 cut(s)	26, 325, 799
Fnu4HI	GCNGC	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	859
GluI	GCNGC	1 cut(s)	437
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	2 cut(s)	177, 344
HaeIII	GGCC	1 cut(s)	899
HapII	CCGG	4 cut(s)	585, 900, 1014, 1019
HhaI	GCGC	1 cut(s)	860
Hin1II	CATG	1 cut(s)	1052
Hin6I	GCGC	1 cut(s)	858
HinP1I	GCGC	1 cut(s)	858
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	5 cut(s)	59, 201, 263, 379, 798
HpaII	CCGG	4 cut(s)	585, 900, 1014, 1019
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	91, 562
Hpy188I	TCNGA	1 cut(s)	1144
Hpy188III	TCNNGA	6 cut(s)	156, 260, 323, 585, 870, 1019
Hpy8I	GTNNAC	2 cut(s)	91, 562
HpyAV	CCTTC	3 cut(s)	73, 432, 1147
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	2 cut(s)	877, 1169
HpyCH4V	TGCA	1 cut(s)	1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 864
HpyF3I	CTNAG	3 cut(s)	446, 499, 868
HpySE526I	ACGT	2 cut(s)	877, 1169
Hsp92II	CATG	1 cut(s)	1052
HspAI	GCGC	1 cut(s)	858
Kpn2I	TCCGGA	2 cut(s)	584, 1018
Kzo9I	GATC	4 cut(s)	45, 958, 979, 1059
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	2 cut(s)	624, 1075
MabI	ACCWGGT	1 cut(s)	555
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	877, 1169
MaeIII	GTNAC	4 cut(s)	56, 475, 622, 682
MalI	GATC	4 cut(s)	47, 960, 981, 1061
MboI	GATC	4 cut(s)	45, 958, 979, 1059
MboII	GAAGA	2 cut(s)	110, 218
MflI	RGATCY	1 cut(s)	979
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	6 cut(s)	114, 163, 359, 840, 1022, 1122
MlyI	GAGTC	3 cut(s)	53, 272, 807
MnlI	CCTC	8 cut(s)	152, 310, 482, 485, 532, 621, 855, 1130
MroI	TCCGGA	2 cut(s)	584, 1018
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	6 cut(s)	147, 594, 776, 863, 923, 1010
MspI	CCGG	4 cut(s)	585, 900, 1014, 1019
MspR9I	CCNGG	3 cut(s)	557, 656, 984
MvaI	CCWGG	3 cut(s)	557, 656, 984
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	2 cut(s)	334, 864
NdeII	GATC	4 cut(s)	45, 958, 979, 1059
NheI	GCTAGC	1 cut(s)	328
NlaIII	CATG	1 cut(s)	1052
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	2 cut(s)	56, 622
PasI	CCCWGGG	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	201, 379
PinAI	ACCGGT	1 cut(s)	1013
PkrI	GCNGC	1 cut(s)	438
PleI	GAGTC	3 cut(s)	53, 271, 806
PpsI	GAGTC	3 cut(s)	53, 271, 806
Ppu21I	YACGTR	1 cut(s)	1170
PsiI	TTATAA	1 cut(s)	1121
Psp6I	CCWGG	3 cut(s)	555, 654, 982
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	3 cut(s)	555, 654, 982
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	5 cut(s)	340, 454, 986, 1016, 1156
PsuI	RGATCY	1 cut(s)	979
RsaI	GTAC	3 cut(s)	297, 504, 828
RsaNI	GTAC	3 cut(s)	296, 503, 827
Rsr2I	CGGWCCG	1 cut(s)	1016
RsrII	CGGWCCG	1 cut(s)	1016
SaqAI	TTAA	6 cut(s)	147, 594, 776, 863, 923, 1010
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	4 cut(s)	45, 958, 979, 1059
Sau96I	GGNCC	5 cut(s)	340, 454, 986, 1016, 1156
ScaI	AGTACT	1 cut(s)	828
SchI	GAGTC	3 cut(s)	53, 272, 807
ScrFI	CCNGG	3 cut(s)	557, 656, 984
SduI	GDGCHC	1 cut(s)	12
SexAI	ACCWGGT	1 cut(s)	555
SfaNI	GCATC	2 cut(s)	624, 1075
SfcI	CTRYAG	2 cut(s)	130, 741
SinI	GGWCC	5 cut(s)	340, 454, 986, 1016, 1156
SmlI	CTYRAG	3 cut(s)	260, 353, 833
SmoI	CTYRAG	3 cut(s)	260, 353, 833
Sse9I	AATT	6 cut(s)	114, 163, 359, 840, 1022, 1122
SsiI	CCGC	5 cut(s)	33, 291, 332, 792, 1107
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	3 cut(s)	555, 654, 982
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	2 cut(s)	880, 1172
TaqII	GACCGA	1 cut(s)	610
TasI	AATT	6 cut(s)	114, 163, 359, 840, 1022, 1122
TatI	WGTACW	2 cut(s)	295, 826
TfiI	GAWTC	2 cut(s)	201, 379
Tru1I	TTAA	6 cut(s)	147, 594, 776, 863, 923, 1010
Tru9I	TTAA	6 cut(s)	147, 594, 776, 863, 923, 1010
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	2 cut(s)	56, 622
TseI	GCWGC	1 cut(s)	436
Tsp45I	GTSAC	2 cut(s)	56, 622
TspDTI	ATGAA	5 cut(s)	231, 401, 458, 758, 968
TspGWI	ACGGA	3 cut(s)	72, 156, 501
TspRI	CASTG	1 cut(s)	810
VpaK11BI	GGWCC	5 cut(s)	340, 454, 986, 1016, 1156
XapI	RAATTY	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	329
ZrmI	AGTACT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.