RLG00000018733

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014087
Physical Location & Seq
Forward (+)
34744998 .. 34745901
904 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018733

Sequence Viewer

Length: 327 bp
ATGAAGAAATGCCACACTTTTAAAATAGAACTCATGGGTTCTGCTAAATCCTATTCTACTAATTCTCTTCTTGTTGTACCATGTCCAAGCTTGACGATAGCAGTGGAACAAAAGTCACCATCGGATTCAAAGAATGAACCTTCCTTCCAAGATACGGCATTAACCAGATGCCCTTGGCTCAGGATGGACCTTGCTGGTTTAAGTCTTCGGGGTGAAAAGGCTTGCCCGCTCCCTTTGGGCTCCACCACCACGGGCCTCCGCCTCATGGGCTGCCCAATGTCCCGAGCGAGCGGAATACTACTTAGTCAAGTAGAAGGGCCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.57

Weight (kDa)

8.95

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 229, 291
AciI CCGC 3 cut(s) 227, 259, 291
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 154, 265
AgsI TTSAA 1 cut(s) 129
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 2 cut(s) 253, 317
ApeKI GCWGC 1 cut(s) 270
AspS9I GGNCC 3 cut(s) 187, 253, 317
AsuHPI GGTGA 2 cut(s) 108, 224
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 257
BccI CCATC 2 cut(s) 127, 178
BceAI ACGGC 1 cut(s) 171
BglI GCCNNNNNGGC 1 cut(s) 267
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 3 cut(s) 187, 253, 317
BmiI GGNNCC 1 cut(s) 241
BmsI GCATC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 173, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 265
BseDI CCNNGG 2 cut(s) 173, 249
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 154, 265
BseMII CTCAG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 257
BshFI GGCC 2 cut(s) 255, 319
BsiHKCI CYCGRG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 154, 265
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 2 cut(s) 255, 319
BsoBI CYCGRG 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 242
BspACI CCGC 3 cut(s) 227, 259, 291
BspANI GGCC 2 cut(s) 255, 319
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 241
BsrBI CCGCTC 2 cut(s) 229, 291
BssECI CCNNGG 2 cut(s) 173, 249
BssT1I CCWWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 3 cut(s) 223, 227, 289
BstDEI CTNAG 2 cut(s) 179, 302
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 2 cut(s) 255, 319
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 223, 227, 289
Cfr13I GGNCC 3 cut(s) 187, 253, 317
Csp6I GTAC 1 cut(s) 77
CviAII CATG 3 cut(s) 34, 81, 265
CviJI RGCY 7 cut(s) 90, 178, 221, 240, 255, 270, 319
CviKI_1 RGCY 7 cut(s) 90, 178, 221, 240, 255, 270, 319
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 179, 302
DraI TTTAAA 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 3 cut(s) 37, 84, 268
FaiI YATR 3 cut(s) 35, 82, 266
FaqI GGGAC 1 cut(s) 265
FatI CATG 3 cut(s) 33, 80, 264
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 1 cut(s) 196
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 271
GluI GCNGC 1 cut(s) 271
HaeIII GGCC 2 cut(s) 255, 319
Hin1II CATG 3 cut(s) 37, 84, 268
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 1 cut(s) 125
HphI GGTGA 2 cut(s) 108, 224
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 181, 282
HpyAV CCTTC 3 cut(s) 150, 154, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 2 cut(s) 179, 302
Hsp92II CATG 3 cut(s) 37, 84, 268
LmnI GCTCC 2 cut(s) 234, 245
LpnPI CCDG 3 cut(s) 166, 178, 180
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 114
MbiI CCGCTC 2 cut(s) 229, 291
MboII GAAGA 3 cut(s) 16, 59, 197
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 1 cut(s) 61
MnlI CCTC 2 cut(s) 266, 272
MseI TTAA 3 cut(s) 21, 161, 200
MwoI GCNNNNNNNGC 1 cut(s) 267
NlaIII CATG 3 cut(s) 37, 84, 268
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 3 cut(s) 187, 253, 317
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 21, 161, 200
SatI GCNGC 1 cut(s) 271
Sau96I GGNCC 3 cut(s) 187, 253, 317
SduI GDGCHC 1 cut(s) 242
SetI ASST 4 cut(s) 92, 142, 192, 326
SfaNI GCATC 1 cut(s) 158
SinI GGWCC 1 cut(s) 187
Sse9I AATT 1 cut(s) 61
SsiI CCGC 3 cut(s) 227, 259, 291
StyI CCWWGG 1 cut(s) 173
TasI AATT 1 cut(s) 61
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 21, 161, 200
Tru9I TTAA 3 cut(s) 21, 161, 200
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 17, 150
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.