RchiOBHm_Chr6g0256721

ATP synthase A chain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
11992704 .. 11994752
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23031

Sequence Viewer

Length: 1764 bp
ATGGCATTATACAACAATTTACTTTTTAGTATCGAACGTGAGTATTGCAGTAGACCACATCCTGGGTTGATAATAGCAGGATTAATCTTCAAAGAGCCATACTTAAGATGTAATCAGTGTGATCTGATAGTTTTAGCTGTATTGTACTTACTAATCAAGTGCGCTTACACAACTGAATCTACTCACGGTAAGTTTACTATCGGTTATGTTCTGGATGTTCCATCAATAGGTGAAATATCTTTTACTCTTAGTGAATCTATCACTTTTCGATATAAAGGTGAAGATTTACCAGTCTATGCTTTGATTGATAAACTAACCCGTGAGAAAGCAGATGAATACGATGATGCTAAAATAAAACAACTTTATATTCGAATATATCTAACTGAAACGAAAACTAGTGAGCTTCCTAAATTTCATTTCACTTTTGATGAGATGGTTAACAAGCTCCATGAAATGATAAACTATAAGCGTGATGTGGATCCTATAGAAGTGAGAACACCCGTCGTACATAGTAATAGAAAGAGTCGATATCCTAAGTCTCTTACATCACTCAAACCTAGTAGTAAGGAACTGTTGCCATTCATTGTTGCTGATACGGAGACTGTTCTAGTAAATGATGTTCATGTACCTTACGCTGTGGGATTCATGGAAGTGAAACCCTGCGATGCTCTTTCATCAAAGATGGTTGAAACATATTACAGTACTGATTACCCCGACTATATCTACAAAACCATTGAAGAAAGGTGTGATAAGATGTTGTTCGACTTTTTAGAACGTTTAGCTGTTGTTGTTAGAAAAAATCCTTCAATGAAAACAGTCTACTTCCACAACTTATCACGATTCGATGGTATTCTATTACTTAAATATTTTGTCAATAATAGTGAGAAGTACACGGTCAAACCACTTATAAGGAATAATTTGATATACGAGATTACAGTCTATCGGGGAAAGAAGCTGCTATACCATCTAAAGGATTCTCTTAGAATGCTCCCTAATAGTCTTGATAGCTTAGCCAGGCATCTATGTCCTCAATTAGGTTCTAAAGGGATCATACAGCATAATGAAATCCGAGTCTCTAATCTACTTCATAATAGGGATAAAATCTTGGACTATATGAAGCAGGACATCGTTCTATTAGGTGGGGTGATGCTAAAGGCTCAAGATATATATTGGAGGGCATTCAAAGTGGATATTGACGCACTATTACAATCAAAAGAACTGGAATATCCATGCCCAAAGACTTTTACTTTTTCGTTATTTCGTAATCCCCAGGGTATGATACCTTATAGCTTCACAGTTACAAGTCATTTTCTCATTACTTTGGGTCTCTCATTTTCTATTTTTATTGGCATTACTATAGTGGGATTTCAAAGAAATGGGCTTCATTTTTTAAGCATCTCATTACCCGCAGGAGTCCCACTGCCGTTAGCACCTTTTTTAGTACTCCTTGAGCTAATTCCTCATTGTTTTCGCGCATTAAGCTCAGGAATACGTTTATTTGCTAATATGATGGCCGGTCATAGTTCAGTAAAGATTTTAAGTGGGTTCGCTTGGACTATGCTATGTATGAATGATCTTTTATTTTTTATAGGAGATCTTGGTCCTTTATTTATAGTTCTTGCATTAACCGGTCCGGAATTAGGTGTAGCTATATCACAAGCTCATGTTTCTACGATCTCAATCTGTATTTACTTGAATGATGCTACAAATCTCCATCAAAGTGGTTATTTATTTATAATTGAACAAAAGGGAGTACGAAAGTAG

Protein Analysis

587

Amino Acids

67.15

Weight (kDa)

8.53

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_B_2 PF03175 267 - 364 2.7e-13 DNA polymerase type B, organellar and viral
ATP-synt_A PF00119 414 - 566 3e-28 ATP synthase A chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 908, 1736
AccB7I CCANNNNNTGG 1 cut(s) 62
AccI GTMKAC 2 cut(s) 52, 819
AccII CGCG 1 cut(s) 1473
AccIII TCCGGA 1 cut(s) 1633
AciI CCGC 1 cut(s) 1407
AclI AACGTT 1 cut(s) 775
AclWI GGATC 3 cut(s) 473, 486, 1055
AcoI YGGCCR 1 cut(s) 1512
AcsI RAATTY 1 cut(s) 410
AfaI GTAC 7 cut(s) 146, 507, 627, 703, 890, 1443, 1755
AfiI CCNNNNNNNGG 5 cut(s) 62, 227, 970, 1034, 1640
AflII CTTAAG 1 cut(s) 103
AgeI ACCGGT 1 cut(s) 1628
AgsI TTSAA 8 cut(s) 91, 689, 737, 807, 1183, 1370, 1696, 1742
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 3 cut(s) 61, 1013, 1269
Alw26I GTCTC 4 cut(s) 543, 593, 1078, 1331
AlwI GGATC 3 cut(s) 473, 486, 1055
Aor13HI TCCGGA 1 cut(s) 1633
AoxI GGCC 1 cut(s) 1512
ApeKI GCWGC 1 cut(s) 955
ApoI RAATTY 1 cut(s) 410
AseI ATTAAT 1 cut(s) 83
AsiGI ACCGGT 1 cut(s) 1628
AspLEI GCGC 2 cut(s) 164, 1475
AspS9I GGNCC 2 cut(s) 1601, 1631
AsuHPI GGTGA 3 cut(s) 242, 290, 1156
AsuII TTCGAA 1 cut(s) 370
AvaII GGWCC 2 cut(s) 1601, 1631
BamHI GGATCC 1 cut(s) 478
BarI GAAGNNNNNNTAC 2 cut(s) 944, 976
BbvI GCAGC 1 cut(s) 942
BccI CCATC 7 cut(s) 229, 427, 676, 839, 972, 1504, 1722
BceAI ACGGC 1 cut(s) 1408
BciT130I CCWGG 3 cut(s) 63, 1015, 1271
BcoDI GTCTC 4 cut(s) 543, 593, 1078, 1331
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 3 cut(s) 396, 558, 608
BfmI CTRYAG 2 cut(s) 483, 1356
BfrI CTTAAG 1 cut(s) 103
BglII AGATCT 1 cut(s) 1594
BisI GCNGC 1 cut(s) 956
BlpI GCTNAGC 1 cut(s) 1009
BlsI GCNGC 1 cut(s) 957
BmcAI AGTACT 2 cut(s) 703, 1443
Bme1390I CCNGG 3 cut(s) 63, 1015, 1271
Bme18I GGWCC 2 cut(s) 1601, 1631
BmgT120I GGNCC 2 cut(s) 1601, 1631
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 3 cut(s) 63, 1015, 1271
BmsI GCATC 6 cut(s) 334, 655, 1027, 1137, 1404, 1690
Bpu10I CCTNAGC 1 cut(s) 1483
Bpu1102I GCTNAGC 1 cut(s) 1009
Bpu14I TTCGAA 1 cut(s) 370
BpuEI CTTGAG 2 cut(s) 1143, 1469
BsaBI GATNNNNATC 2 cut(s) 477, 1679
BsaI GGTCTC 1 cut(s) 1331
BsaJI CCNNGG 3 cut(s) 62, 1269, 1270
BsaWI WCCGGW 2 cut(s) 1628, 1633
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 227, 970, 1034, 1640
Bse118I RCCGGY 2 cut(s) 1514, 1628
Bse1I ACTGG 2 cut(s) 290, 1224
Bse8I GATNNNNATC 2 cut(s) 477, 1679
BseAI TCCGGA 1 cut(s) 1633
BseBI CCWGG 3 cut(s) 63, 1015, 1271
BseDI CCNNGG 3 cut(s) 62, 1269, 1270
BseGI GGATG 2 cut(s) 58, 220
BseJI GATNNNNATC 2 cut(s) 477, 1679
BseLI CCNNNNNNNGG 5 cut(s) 62, 227, 970, 1034, 1640
BseMII CTCAG 1 cut(s) 1497
BseNI ACTGG 2 cut(s) 290, 1224
BseXI GCAGC 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 1473
BshFI GGCC 1 cut(s) 1514
BshTI ACCGGT 1 cut(s) 1628
BsiSI CCGG 3 cut(s) 1515, 1629, 1634
BslFI GGGAC 1 cut(s) 1400
BslI CCNNNNNNNGG 5 cut(s) 62, 227, 970, 1034, 1640
BsmAI GTCTC 4 cut(s) 543, 593, 1078, 1331
BsmFI GGGAC 1 cut(s) 1400
BsmI GAATGC 2 cut(s) 990, 1178
BsnI GGCC 1 cut(s) 1514
Bso31I GGTCTC 1 cut(s) 1331
Bsp119I TTCGAA 1 cut(s) 370
Bsp13I TCCGGA 1 cut(s) 1633
Bsp143I GATC 6 cut(s) 121, 478, 1047, 1573, 1594, 1674
Bsp1720I GCTNAGC 1 cut(s) 1009
BspACI CCGC 1 cut(s) 1407
BspANI GGCC 1 cut(s) 1514
BspCNI CTCAG 1 cut(s) 1496
BspEI TCCGGA 1 cut(s) 1633
BspFNI CGCG 1 cut(s) 1473
BspLI GGNNCC 1 cut(s) 480
BspPI GGATC 3 cut(s) 473, 486, 1055
BspT104I TTCGAA 1 cut(s) 370
BspTI CTTAAG 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 1331
BsrFI RCCGGY 2 cut(s) 1514, 1628
BsrI ACTGG 2 cut(s) 290, 1224
BssAI RCCGGY 2 cut(s) 1514, 1628
BssECI CCNNGG 3 cut(s) 62, 1269, 1270
BssMI GATC 6 cut(s) 121, 478, 1047, 1573, 1594, 1674
Bst2UI CCWGG 3 cut(s) 63, 1015, 1271
Bst4CI ACNGT 8 cut(s) 188, 573, 604, 701, 817, 895, 937, 1297
BstAFI CTTAAG 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 370
BstDEI CTNAG 5 cut(s) 248, 534, 980, 1009, 1483
BstENI CCTNNNNNAGG 1 cut(s) 1032
BstF5I GGATG 2 cut(s) 58, 220
BstFNI CGCG 1 cut(s) 1473
BstHHI GCGC 2 cut(s) 164, 1475
BstKTI GATC 6 cut(s) 124, 481, 1050, 1576, 1597, 1677
BstMAI GTCTC 4 cut(s) 543, 593, 1078, 1331
BstMBI GATC 6 cut(s) 121, 478, 1047, 1573, 1594, 1674
BstMWI GCNNNNNNNGC 1 cut(s) 1479
BstNI CCWGG 3 cut(s) 63, 1015, 1271
BstSCI CCNGG 3 cut(s) 61, 1013, 1269
BstSFI CTRYAG 2 cut(s) 483, 1356
BstUI CGCG 1 cut(s) 1473
BstV1I GCAGC 1 cut(s) 942
BstX2I RGATCY 2 cut(s) 478, 1594
BstXI CCANNNNNNTGG 1 cut(s) 1721
BstYI RGATCY 2 cut(s) 478, 1594
BsuRI GGCC 1 cut(s) 1514
BtgZI GCGATG 1 cut(s) 678
BtsCI GGATG 2 cut(s) 58, 220
BtsI GCAGTG 1 cut(s) 1418
BtsIMutI CAGTG 2 cut(s) 122, 1418
CfoI GCGC 2 cut(s) 164, 1475
Cfr10I RCCGGY 2 cut(s) 1514, 1628
Cfr13I GGNCC 2 cut(s) 1601, 1631
CpoI CGGWCCG 1 cut(s) 1631
CseI GACGC 1 cut(s) 1205
Csp6I GTAC 7 cut(s) 145, 506, 626, 702, 889, 1442, 1754
CspAI ACCGGT 1 cut(s) 1628
CspI CGGWCCG 1 cut(s) 1631
CviAII CATG 5 cut(s) 449, 623, 646, 1230, 1664
CviQI GTAC 7 cut(s) 145, 506, 626, 702, 889, 1442, 1754
DdeI CTNAG 5 cut(s) 248, 534, 980, 1009, 1483
DpnI GATC 6 cut(s) 123, 480, 1049, 1575, 1596, 1676
DpnII GATC 6 cut(s) 121, 478, 1047, 1573, 1594, 1674
EaeI YGGCCR 1 cut(s) 1512
Eco31I GGTCTC 1 cut(s) 1331
Eco32I GATATC 1 cut(s) 530
Eco47I GGWCC 2 cut(s) 1601, 1631
EcoNI CCTNNNNNAGG 1 cut(s) 1032
EcoRII CCWGG 3 cut(s) 61, 1013, 1269
EcoRV GATATC 1 cut(s) 530
FaeI CATG 5 cut(s) 452, 626, 649, 1233, 1667
FaqI GGGAC 1 cut(s) 1400
FatI CATG 5 cut(s) 448, 622, 645, 1229, 1663
FauI CCCGC 1 cut(s) 1414
FblI GTMKAC 2 cut(s) 52, 819
Fnu4HI GCNGC 1 cut(s) 956
FokI GGATG 2 cut(s) 45, 227
Fsp4HI GCNGC 1 cut(s) 956
FspBI CTAG 3 cut(s) 396, 558, 608
GlaI GCGC 2 cut(s) 163, 1474
GluI GCNGC 1 cut(s) 956
HaeIII GGCC 1 cut(s) 1514
HapII CCGG 3 cut(s) 1515, 1629, 1634
HgaI GACGC 1 cut(s) 1205
HhaI GCGC 2 cut(s) 164, 1475
Hin1II CATG 5 cut(s) 452, 626, 649, 1233, 1667
Hin6I GCGC 2 cut(s) 162, 1473
HinP1I GCGC 2 cut(s) 162, 1473
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 8 cut(s) 176, 254, 523, 642, 840, 974, 1071, 1413
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 3 cut(s) 1515, 1629, 1634
HphI GGTGA 3 cut(s) 242, 290, 1156
Hpy166II GTNNAC 5 cut(s) 53, 195, 439, 820, 891
Hpy188I TCNGA 2 cut(s) 126, 1070
Hpy188III TCNNGA 6 cut(s) 212, 837, 1001, 1160, 1485, 1634
Hpy8I GTNNAC 5 cut(s) 53, 195, 439, 820, 891
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 1 cut(s) 813
HpyCH4III ACNGT 8 cut(s) 188, 573, 604, 701, 817, 895, 937, 1297
HpyCH4IV ACGT 3 cut(s) 37, 775, 1492
HpyCH4V TGCA 2 cut(s) 48, 1622
HpyF10VI GCNNNNNNNGC 1 cut(s) 1479
HpyF3I CTNAG 5 cut(s) 248, 534, 980, 1009, 1483
HpySE526I ACGT 3 cut(s) 37, 775, 1492
Hsp92II CATG 5 cut(s) 452, 626, 649, 1233, 1667
HspAI GCGC 2 cut(s) 162, 1473
Kpn2I TCCGGA 1 cut(s) 1633
KspAI GTTAAC 1 cut(s) 439
Kzo9I GATC 6 cut(s) 121, 478, 1047, 1573, 1594, 1674
LmnI GCTCC 2 cut(s) 450, 993
Lsp1109I GCAGC 1 cut(s) 942
LweI GCATC 6 cut(s) 334, 655, 1027, 1137, 1404, 1690
MaeI CTAG 3 cut(s) 396, 558, 608
MaeII ACGT 3 cut(s) 37, 775, 1492
MaeIII GTNAC 1 cut(s) 1297
MalI GATC 6 cut(s) 123, 480, 1049, 1575, 1596, 1676
MboI GATC 6 cut(s) 121, 478, 1047, 1573, 1594, 1674
MboII GAAGA 3 cut(s) 79, 293, 749
MflI RGATCY 2 cut(s) 478, 1594
MluCI AATT 7 cut(s) 16, 410, 916, 1031, 1455, 1637, 1737
MlyI GAGTC 3 cut(s) 532, 1080, 1422
MnlI CCTC 3 cut(s) 1038, 1167, 1470
MroI TCCGGA 1 cut(s) 1633
MseI TTAA 8 cut(s) 83, 104, 438, 861, 1391, 1478, 1538, 1625
MslI CAYNNNNRTG 2 cut(s) 650, 1719
MspCI CTTAAG 1 cut(s) 103
MspI CCGG 3 cut(s) 1515, 1629, 1634
MspR9I CCNGG 3 cut(s) 63, 1015, 1271
Mva1269I GAATGC 2 cut(s) 990, 1178
MvaI CCWGG 3 cut(s) 63, 1015, 1271
MvnI CGCG 1 cut(s) 1473
MwoI GCNNNNNNNGC 1 cut(s) 1479
NdeII GATC 6 cut(s) 121, 478, 1047, 1573, 1594, 1674
NlaIII CATG 5 cut(s) 452, 626, 649, 1233, 1667
NlaIV GGNNCC 1 cut(s) 480
NspV TTCGAA 1 cut(s) 370
PasI CCCWGGG 1 cut(s) 1270
PctI GAATGC 2 cut(s) 990, 1178
PfeI GAWTC 5 cut(s) 176, 254, 642, 840, 974
PflMI CCANNNNNTGG 1 cut(s) 62
PinAI ACCGGT 1 cut(s) 1628
PkrI GCNGC 1 cut(s) 957
PleI GAGTC 3 cut(s) 531, 1079, 1421
PpsI GAGTC 3 cut(s) 531, 1079, 1421
PshBI ATTAAT 1 cut(s) 83
PsiI TTATAA 2 cut(s) 908, 1736
Psp1406I AACGTT 1 cut(s) 775
Psp6I CCWGG 3 cut(s) 61, 1013, 1269
PspGI CCWGG 3 cut(s) 61, 1013, 1269
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 2 cut(s) 1601, 1631
PsrI GAACNNNNNNTAC 2 cut(s) 603, 635
PsuI RGATCY 2 cut(s) 478, 1594
RsaI GTAC 7 cut(s) 146, 507, 627, 703, 890, 1443, 1755
RsaNI GTAC 7 cut(s) 145, 506, 626, 702, 889, 1442, 1754
RseI CAYNNNNRTG 2 cut(s) 650, 1719
Rsr2I CGGWCCG 1 cut(s) 1631
RsrII CGGWCCG 1 cut(s) 1631
SaqAI TTAA 8 cut(s) 83, 104, 438, 861, 1391, 1478, 1538, 1625
SatI GCNGC 1 cut(s) 956
Sau3AI GATC 6 cut(s) 121, 478, 1047, 1573, 1594, 1674
Sau96I GGNCC 2 cut(s) 1601, 1631
ScaI AGTACT 2 cut(s) 703, 1443
SchI GAGTC 3 cut(s) 532, 1080, 1422
ScrFI CCNGG 3 cut(s) 63, 1015, 1271
SfaNI GCATC 6 cut(s) 334, 655, 1027, 1137, 1404, 1690
SfcI CTRYAG 2 cut(s) 483, 1356
SfuI TTCGAA 1 cut(s) 370
SinI GGWCC 2 cut(s) 1601, 1631
SmiMI CAYNNNNRTG 2 cut(s) 650, 1719
SmlI CTYRAG 3 cut(s) 103, 1158, 1448
SmoI CTYRAG 3 cut(s) 103, 1158, 1448
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 7 cut(s) 16, 410, 916, 1031, 1455, 1637, 1737
SsiI CCGC 1 cut(s) 1407
SspI AATATT 1 cut(s) 866
SspMI CTAG 3 cut(s) 396, 558, 608
StyD4I CCNGG 3 cut(s) 61, 1013, 1269
TaaI ACNGT 8 cut(s) 188, 573, 604, 701, 817, 895, 937, 1297
TaiI ACGT 3 cut(s) 40, 778, 1495
TaqI TCGA 6 cut(s) 33, 268, 370, 526, 762, 843
TasI AATT 7 cut(s) 16, 410, 916, 1031, 1455, 1637, 1737
TatI WGTACW 4 cut(s) 144, 701, 888, 1441
TfiI GAWTC 5 cut(s) 176, 254, 642, 840, 974
Tru1I TTAA 8 cut(s) 83, 104, 438, 861, 1391, 1478, 1538, 1625
Tru9I TTAA 8 cut(s) 83, 104, 438, 861, 1391, 1478, 1538, 1625
TscAI CASTG 2 cut(s) 122, 1425
TseI GCWGC 1 cut(s) 955
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 2 cut(s) 122, 1425
Van91I CCANNNNNTGG 1 cut(s) 62
Vha464I CTTAAG 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 1601, 1631
VspI ATTAAT 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 1032
XapI RAATTY 1 cut(s) 410
XmiI GTMKAC 2 cut(s) 52, 819
XspI CTAG 3 cut(s) 396, 558, 608
ZrmI AGTACT 2 cut(s) 703, 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.