Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014087

Physical Location & Seq

Genomic Coordinates Reverse (-)

14850645 .. 14851436

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG168400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTTAAACAAAAGAGATCTTGGTCCTTTATTTATAGTTCTTGCATTAACCGGTCCGGAATTAGGTGTAGCTATATCACAAGCTCATAATACCGTCTCTCCAAACTCGCATAGAAGCCCTCTTCGCACCCTGATCCAGACCCAGCTACTAGACTCGGACACCTACACCGGGCCATTCCATTGCGTTGCAAGCTCGCGAGTGGGCGGAGACCGCTTTTGTTGTGGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_A

Protein Analysis

76

Amino Acids

8.17

Weight (kDa)

7.79

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07741 ATMG00410 ATMG01170
malus_domestica	MD15G1429600.v1.1
pyrus_communis	pycom461g00070
rosa_chinensis	RchiOBHm_Chr6g0256721 RchiOBHm_Chr7g0231141 RchiOBHm_MTg0498771
rosa_laevigata	RLG00000000437 RLG00000000472 RLG00000000497 RLG00000018733
rosa_roxburghii	Rroxscaffold_2G00119300
rosa_samantha	Rh2BG168400 Rh2DG167300 Rh6AG048600
rosa_wichuraiana	Rw7G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	2 cut(s)	204, 211
AclWI	GGATC	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	62, 168
AgeI	ACCGGT	1 cut(s)	50
AluBI	AGCT	4 cut(s)	71, 83, 145, 192
AluI	AGCT	4 cut(s)	71, 83, 145, 192
Alw26I	GTCTC	2 cut(s)	100, 201
AlwI	GGATC	1 cut(s)	127
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	1 cut(s)	170
AsiGI	ACCGGT	1 cut(s)	50
AspS9I	GGNCC	3 cut(s)	23, 53, 170
AsuC2I	CCSGG	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	23, 53
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	100, 201
BfaI	CTAG	1 cut(s)	149
BglII	AGATCT	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	23, 53
BmgT120I	GGNCC	3 cut(s)	23, 53, 170
BmrFI	CCNGG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	201
BsaWI	WCCGGW	2 cut(s)	50, 55
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 168
Bse118I	RCCGGY	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	178
BseAI	TCCGGA	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	62, 168
BseMI	GCAATG	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	172
BshTI	ACCGGT	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	51, 56, 168
BslI	CCNNNNNNNGG	2 cut(s)	62, 168
BsmAI	GTCTC	2 cut(s)	100, 201
BsmBI	CGTCTC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	201
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	16, 132
Bsp68I	TCGCGA	1 cut(s)	196
BspACI	CCGC	2 cut(s)	204, 211
BspANI	GGCC	1 cut(s)	172
BspEI	TCCGGA	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	2 cut(s)	16, 132
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	190, 194
BstFNI	CGCG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	19, 135
BstMAI	GTCTC	2 cut(s)	100, 201
BstMBI	GATC	2 cut(s)	16, 132
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 189, 210
BstSCI	CCNGG	1 cut(s)	167
BstUI	CGCG	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	172
BtuMI	TCGCGA	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	190, 194
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	3 cut(s)	23, 53, 170
CpoI	CGGWCCG	1 cut(s)	53
CspAI	ACCGGT	1 cut(s)	50
CspI	CGGWCCG	1 cut(s)	53
CviJI	RGCY	6 cut(s)	71, 83, 117, 145, 172, 192
CviKI_1	RGCY	6 cut(s)	71, 83, 117, 145, 172, 192
DpnI	GATC	2 cut(s)	18, 134
DpnII	GATC	2 cut(s)	16, 132
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	23, 53
Esp3I	CGTCTC	1 cut(s)	100
FaiI	YATR	6 cut(s)	35, 74, 87, 111, 227, 229
FspBI	CTAG	1 cut(s)	149
GsaI	CCCAGC	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	3 cut(s)	51, 56, 168
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	3 cut(s)	51, 56, 168
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	3 cut(s)	56, 136, 195
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	44, 188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 189, 210
Kpn2I	TCCGGA	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	16, 132
LpnPI	CCDG	6 cut(s)	64, 69, 143, 149, 155, 181
MaeI	CTAG	1 cut(s)	149
MalI	GATC	2 cut(s)	18, 134
MboI	GATC	2 cut(s)	16, 132
MboII	GAAGA	1 cut(s)	113
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	1 cut(s)	129
MroI	TCCGGA	1 cut(s)	55
MseI	TTAA	2 cut(s)	5, 47
MspI	CCGG	3 cut(s)	51, 56, 168
MspR9I	CCNGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	3 cut(s)	123, 189, 210
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	2 cut(s)	16, 132
NruI	TCGCGA	1 cut(s)	196
PinAI	ACCGGT	1 cut(s)	50
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	141
PspPI	GGNCC	3 cut(s)	23, 53, 170
PsuI	RGATCY	1 cut(s)	16
RruI	TCGCGA	1 cut(s)	196
Rsr2I	CGGWCCG	1 cut(s)	53
RsrII	CGGWCCG	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	5, 47
Sau3AI	GATC	2 cut(s)	16, 132
Sau96I	GGNCC	3 cut(s)	23, 53, 170
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	6 cut(s)	67, 73, 85, 147, 164, 194
SinI	GGWCC	2 cut(s)	23, 53
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	204, 211
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	5, 47
Tru9I	TTAA	2 cut(s)	5, 47
VpaK11BI	GGWCC	2 cut(s)	23, 53
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.