Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014087

Physical Location & Seq

Genomic Coordinates Forward (+)

1096753 .. 1099130

Gene Structure 2378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000472

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCCGGTCATAGTTCAGTAAAGATTTTAAGTGGGTTCGCTTGGACTATGCTATGTATGAATGATCTTTTATTTTTTATAGGAGATCCTGGTCCTTTATTTATAGTTCTTGCATTAACCGGTCCGGAATTAGGTGTAGCTATATCACAAGCTCATAATACCGTCTCTCCAAACTCGCATAGAAGCCCTCTTCGCACCCTGATCCAGACCCAGCTACTAGAGCATGCTCGGACACCTACACCGGGCCATTCCATTGCGTTGCGAGCTCGAGAAAGAATAGACGGAATTCAATTCATCCTTCTAACCGCCACGCCAGAGAAAGAGCTTAGTAAATGGGGAGATCTCGAAAGGTTCCTTCGTACTGGGTGTTACCTTAAGTGGACTTCTAGCCAGCCTAAAGAGAATGGCCAGAGTGAAGTGAAGAAGAGCCCGGAGGAAGGGGCGGGTTTAGTTGAACTGGAAGTACGCTTCGCCACCTCGACCTCGAAACAGGCGTTGATCGGCTGCAGTCTTCGGGGCGAAAAGGCTTGCCCGCTCCCTTTGGGCTCCACCACCTTTAATTTCAGAACCTGGGGCTATTTGGCCTCTCCCGTGGGTCCCACCTCACTATGTTCAGTGCCTCTGATCGGATCGATAGATCAGTTACCGCAGGCAGTCTCATTGGTAGTATTTCTTGGAGAAAAGGTAGCTGCGTCATCTCCAGGTCAAGGGTTTGAGAGAGGCTACGAAGTAGGCACTGAAAGTGTGCTGAACAACAACGCAGGCTCCAATCAATGCCCAGGTCAGTTGCCCAGGAACTGCCATTCTAGGGGACACCCCATCGGCTTCTTATTCAGGAACTATGCTATAAGGGCACTTGGCCCGTCTTTACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_A

Protein Analysis

292

Amino Acids

31.4

Weight (kDa)

8.7

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07741 ATMG00410 ATMG01170
malus_domestica	MD15G1429600.v1.1
pyrus_communis	pycom461g00070
rosa_chinensis	RchiOBHm_Chr6g0256721 RchiOBHm_Chr7g0231141 RchiOBHm_MTg0498771
rosa_laevigata	RLG00000000437 RLG00000000472 RLG00000000497 RLG00000018733
rosa_roxburghii	Rroxscaffold_2G00119300
rosa_samantha	Rh2BG168400 Rh2DG167300 Rh6AG048600
rosa_wichuraiana	Rw7G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	535
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	4 cut(s)	306, 443, 533, 647
AclWI	GGATC	3 cut(s)	80, 196, 637
AcoI	YGGCCR	2 cut(s)	3, 406
AcsI	RAATTY	1 cut(s)	285
AfaI	GTAC	2 cut(s)	361, 465
AfiI	CCNNNNNNNGG	6 cut(s)	131, 242, 437, 626, 707, 808
AflII	CTTAAG	1 cut(s)	374
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	290, 455
AjnI	CCWGG	5 cut(s)	88, 569, 700, 778, 791
AluBI	AGCT	6 cut(s)	140, 152, 214, 266, 325, 689
AluI	AGCT	6 cut(s)	140, 152, 214, 266, 325, 689
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	169, 661
AlwI	GGATC	3 cut(s)	80, 196, 637
AlwNI	CAGNNNCTG	2 cut(s)	570, 798
Ama87I	CYCGRG	1 cut(s)	267
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	5 cut(s)	3, 244, 406, 582, 859
ApeKI	GCWGC	2 cut(s)	504, 689
ApoI	RAATTY	1 cut(s)	285
AsiGI	ACCGGT	1 cut(s)	119
AspS9I	GGNCC	5 cut(s)	92, 122, 244, 596, 860
AsuC2I	CCSGG	2 cut(s)	243, 431
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	3 cut(s)	92, 122, 596
BaeGI	GKGCMC	1 cut(s)	856
BalI	TGGCCA	1 cut(s)	408
BanII	GRGCYC	3 cut(s)	268, 431, 548
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	491, 676
BccI	CCATC	1 cut(s)	827
BciT130I	CCWGG	5 cut(s)	90, 571, 702, 780, 793
BcnI	CCSGG	2 cut(s)	243, 431
BcoDI	GTCTC	2 cut(s)	169, 661
BfaI	CTAG	3 cut(s)	218, 387, 807
BfmI	CTRYAG	1 cut(s)	505
BfrI	CTTAAG	1 cut(s)	374
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	2 cut(s)	505, 690
BlsI	GCNGC	2 cut(s)	506, 691
Bme1390I	CCNGG	7 cut(s)	90, 243, 431, 571, 702, 780, 793
Bme18I	GGWCC	3 cut(s)	92, 122, 596
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	5 cut(s)	92, 122, 244, 596, 860
BmiI	GGNNCC	5 cut(s)	353, 547, 597, 598, 766
BmrFI	CCNGG	7 cut(s)	90, 243, 431, 571, 702, 780, 793
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	684
BpuMI	CCSGG	2 cut(s)	243, 431
Bsa29I	ATCGAT	1 cut(s)	632
BsaJI	CCNNGG	4 cut(s)	570, 591, 778, 791
BsaWI	WCCGGW	2 cut(s)	119, 124
BsaXI	ACNNNNNCTCC	6 cut(s)	151, 181, 669, 699, 749, 779
Bsc4I	CCNNNNNNNGG	6 cut(s)	131, 242, 437, 626, 707, 808
Bse118I	RCCGGY	2 cut(s)	5, 119
Bse1I	ACTGG	2 cut(s)	367, 462
Bse3DI	GCAATG	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	5 cut(s)	90, 571, 702, 780, 793
BseCI	ATCGAT	1 cut(s)	632
BseDI	CCNNGG	4 cut(s)	570, 591, 778, 791
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	6 cut(s)	131, 242, 437, 626, 707, 808
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	367, 462
BseSI	GKGCMC	1 cut(s)	856
BseXI	GCAGC	2 cut(s)	491, 676
BseYI	CCCAGC	1 cut(s)	210
BshFI	GGCC	5 cut(s)	5, 246, 408, 584, 861
BshTI	ACCGGT	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	5 cut(s)	6, 120, 125, 242, 431
BslFI	GGGAC	2 cut(s)	582, 825
BslI	CCNNNNNNNGG	6 cut(s)	131, 242, 437, 626, 707, 808
BsmAI	GTCTC	2 cut(s)	169, 661
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	582, 825
BsnI	GGCC	5 cut(s)	5, 246, 408, 584, 861
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	4 cut(s)	268, 431, 548, 856
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	8 cut(s)	64, 85, 201, 340, 498, 624, 629, 637
BspACI	CCGC	4 cut(s)	306, 443, 533, 647
BspANI	GGCC	5 cut(s)	5, 246, 408, 584, 861
BspDI	ATCGAT	1 cut(s)	632
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	5 cut(s)	353, 547, 597, 598, 766
BspMAI	CTGCAG	1 cut(s)	509
BspPI	GGATC	3 cut(s)	80, 196, 637
BspQI	GCTCTTC	1 cut(s)	419
BspTI	CTTAAG	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	2 cut(s)	5, 119
BsrI	ACTGG	2 cut(s)	367, 462
BssAI	RCCGGY	2 cut(s)	5, 119
BssECI	CCNNGG	4 cut(s)	570, 591, 778, 791
BssMI	GATC	8 cut(s)	64, 85, 201, 340, 498, 624, 629, 637
Bst2UI	CCWGG	5 cut(s)	90, 571, 702, 780, 793
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	195, 419
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	7 cut(s)	225, 264, 392, 529, 533, 651, 763
BstDEI	CTNAG	1 cut(s)	326
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	8 cut(s)	67, 88, 204, 343, 501, 627, 632, 640
BstMAI	GTCTC	2 cut(s)	169, 661
BstMBI	GATC	8 cut(s)	64, 85, 201, 340, 498, 624, 629, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	192, 220, 263, 851
BstNI	CCWGG	5 cut(s)	90, 571, 702, 780, 793
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	7 cut(s)	88, 241, 429, 569, 700, 778, 791
BstSFI	CTRYAG	1 cut(s)	505
BstSLI	GKGCMC	1 cut(s)	856
BstV1I	GCAGC	2 cut(s)	491, 676
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	2 cut(s)	85, 340
BstYI	RGATCY	2 cut(s)	85, 340
Bsu15I	ATCGAT	1 cut(s)	632
BsuRI	GGCC	5 cut(s)	5, 246, 408, 584, 861
BsuTUI	ATCGAT	1 cut(s)	632
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	3 cut(s)	621, 735, 871
Cac8I	GCNNGC	7 cut(s)	225, 264, 392, 529, 533, 651, 763
CaiI	CAGNNNCTG	2 cut(s)	570, 798
Cfr10I	RCCGGY	2 cut(s)	5, 119
Cfr13I	GGNCC	5 cut(s)	92, 122, 244, 596, 860
ClaI	ATCGAT	1 cut(s)	632
CpoI	CGGWCCG	1 cut(s)	122
CseI	GACGC	1 cut(s)	681
Csp6I	GTAC	2 cut(s)	360, 464
CspAI	ACCGGT	1 cut(s)	119
CspI	CGGWCCG	1 cut(s)	122
CviAII	CATG	1 cut(s)	224
CviQI	GTAC	2 cut(s)	360, 464
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	8 cut(s)	66, 87, 203, 342, 500, 626, 631, 639
DpnII	GATC	8 cut(s)	64, 85, 201, 340, 498, 624, 629, 637
EaeI	YGGCCR	2 cut(s)	3, 406
Eam1104I	CTCTTC	2 cut(s)	195, 419
EarI	CTCTTC	2 cut(s)	195, 419
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	3 cut(s)	268, 431, 548
Eco47I	GGWCC	3 cut(s)	92, 122, 596
Eco53kI	GAGCTC	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	5 cut(s)	88, 569, 700, 778, 791
EcoT38I	GRGCYC	3 cut(s)	268, 431, 548
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	1 cut(s)	227
FaqI	GGGAC	2 cut(s)	582, 825
FatI	CATG	1 cut(s)	223
FauI	CCCGC	2 cut(s)	436, 540
Fnu4HI	GCNGC	2 cut(s)	505, 690
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	3 cut(s)	268, 431, 548
Fsp4HI	GCNGC	2 cut(s)	505, 690
FspBI	CTAG	3 cut(s)	218, 387, 807
GluI	GCNGC	2 cut(s)	505, 690
GsaI	CCCAGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	5 cut(s)	5, 246, 408, 584, 861
HapII	CCGG	5 cut(s)	6, 120, 125, 242, 431
HgaI	GACGC	1 cut(s)	681
Hin1II	CATG	1 cut(s)	227
HpaII	CCGG	5 cut(s)	6, 120, 125, 242, 431
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	4 cut(s)	231, 566, 624, 629
Hpy188III	TCNNGA	5 cut(s)	125, 205, 269, 344, 835
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	3 cut(s)	308, 365, 431
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	113, 507
HpyF10VI	GCNNNNNNNGC	4 cut(s)	192, 220, 263, 851
HpyF3I	CTNAG	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	227
KflI	GGGWCCC	1 cut(s)	596
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	8 cut(s)	64, 85, 201, 340, 498, 624, 629, 637
LguI	GCTCTTC	1 cut(s)	419
LmnI	GCTCC	3 cut(s)	540, 551, 770
Lsp1109I	GCAGC	2 cut(s)	491, 676
MaeI	CTAG	3 cut(s)	218, 387, 807
MaeIII	GTNAC	2 cut(s)	368, 642
MalI	GATC	8 cut(s)	66, 87, 203, 342, 500, 626, 631, 639
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	8 cut(s)	64, 85, 201, 340, 498, 624, 629, 637
MboII	GAAGA	4 cut(s)	182, 433, 436, 503
MflI	RGATCY	2 cut(s)	85, 340
MhlI	GDGCHC	4 cut(s)	268, 431, 548, 856
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	4 cut(s)	128, 285, 290, 559
MluNI	TGGCCA	1 cut(s)	408
MnlI	CCTC	8 cut(s)	198, 427, 487, 493, 595, 613, 630, 713
Mox20I	TGGCCA	1 cut(s)	408
MroI	TCCGGA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	4 cut(s)	29, 116, 375, 558
Msp20I	TGGCCA	1 cut(s)	408
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	5 cut(s)	6, 120, 125, 242, 431
MspR9I	CCNGG	7 cut(s)	90, 243, 431, 571, 702, 780, 793
MvaI	CCWGG	5 cut(s)	90, 571, 702, 780, 793
MwoI	GCNNNNNNNGC	4 cut(s)	192, 220, 263, 851
NciI	CCSGG	2 cut(s)	243, 431
NdeII	GATC	8 cut(s)	64, 85, 201, 340, 498, 624, 629, 637
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	5 cut(s)	353, 547, 597, 598, 766
NspI	RCATGY	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	227
PaeR7I	CTCGAG	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	506, 691
PpuMI	RGGWCCY	1 cut(s)	596
Psp124BI	GAGCTC	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	5 cut(s)	88, 569, 700, 778, 791
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	5 cut(s)	88, 569, 700, 778, 791
PspN4I	GGNNCC	5 cut(s)	353, 547, 597, 598, 766
PspPI	GGNCC	5 cut(s)	92, 122, 244, 596, 860
PspPPI	RGGWCCY	1 cut(s)	596
PsrI	GAACNNNNNNTAC	2 cut(s)	447, 479
PstI	CTGCAG	1 cut(s)	509
PstNI	CAGNNNCTG	2 cut(s)	570, 798
PsuI	RGATCY	2 cut(s)	85, 340
RsaI	GTAC	2 cut(s)	361, 465
RsaNI	GTAC	2 cut(s)	360, 464
Rsr2I	CGGWCCG	1 cut(s)	122
RsrII	CGGWCCG	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	419
SaqAI	TTAA	4 cut(s)	29, 116, 375, 558
SatI	GCNGC	2 cut(s)	505, 690
Sau3AI	GATC	8 cut(s)	64, 85, 201, 340, 498, 624, 629, 637
Sau96I	GGNCC	5 cut(s)	92, 122, 244, 596, 860
ScrFI	CCNGG	7 cut(s)	90, 243, 431, 571, 702, 780, 793
SduI	GDGCHC	4 cut(s)	268, 431, 548, 856
SfcI	CTRYAG	1 cut(s)	505
Sfr274I	CTCGAG	1 cut(s)	267
SinI	GGWCC	3 cut(s)	92, 122, 596
SlaI	CTCGAG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	267, 374
SmoI	CTYRAG	2 cut(s)	267, 374
SphI	GCATGC	1 cut(s)	227
Sse9I	AATT	4 cut(s)	128, 285, 290, 559
SsiI	CCGC	4 cut(s)	306, 443, 533, 647
SspMI	CTAG	3 cut(s)	218, 387, 807
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	7 cut(s)	88, 241, 429, 569, 700, 778, 791
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	5 cut(s)	268, 345, 479, 485, 632
TasI	AATT	4 cut(s)	128, 285, 290, 559
Tru1I	TTAA	4 cut(s)	29, 116, 375, 558
Tru9I	TTAA	4 cut(s)	29, 116, 375, 558
TscAI	CASTG	2 cut(s)	621, 742
TseI	GCWGC	2 cut(s)	504, 689
TspDTI	ATGAA	2 cut(s)	74, 283
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	621, 742
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	3 cut(s)	92, 122, 596
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	227
XhoI	CTCGAG	1 cut(s)	267
XspI	CTAG	3 cut(s)	218, 387, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.