RchiOBHm_Chr7g0195831

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013990
Physical Location & Seq
Reverse (-)
13685232 .. 13686431
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 888 bp
ATGAGCTGGTTTTTCATCTCGGTTTTCTTCGTCTTTCTTTTCTGCTCATGTAGCAACTCTAGCACTACTGACCCTTTAGATGTGTTTACTAGAGATGTGGCCCTGAAAACTCTTGCGCAGCACCGGCCTCACACCGGTGCTGTATACAGGGTTCTCCTCCCTGCTAACCTATCCAGCATGGAAGTGTTTGTTGAAGGGATTCGAAGCAGGAGGCTGTGGAACAGAGGTGCTGAAAAGCTCGGCTGTTTTCATATCCCATCAAGAACCAAGCCAATGCCTCATGTGAAGAGACTGGCTTTGGTGTATCAAGACTTGGGGAATCTGTCATCTCAGTTCTACCGTCTTCCAGGTTACTCATTTCTCACCTCTGTTGTTGGTTTTCTCGTTTATGATGCAACACATACAAGTTTGAAAAGTGCTCAAATTGTTGGTCTAAACACAATGGGGAAGTCGATATTGATTCAGTTCCCAAATCTGACATCGGAAGAACGGTTGAACTCCAATGCAAAATGCGCGTCATTTGCTGCCAGTGGGACGGTTTACCTCAGTGACATGATATATCCTGGTATATGTAACACCACGGGTCATGGTCATTTTTCAATTGTTGTTCCAGTGAAGAAAAAACCACTAATCCTGCGGTATTCATGGGTAGTTGCGATTGTCCTTGGAGTTCTTGCAGCTATTTTGGGGTGTTATCTTGGGATGGTGTGTATGAGACATCGGAAGAGGAAGAAGTTTCAAGATATGGAAGAACAGGCTGACGACGATTCAGTTCTTGAAAATAGGTGGGTTCGTGGTAGCAAAATGCCTTCTGGTGGAGTTACAAGAACTCAGCCAGTTTCTGAGAATGGTTTCCAACACCTAGCTTCACCTGATCACTTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

295

Amino Acids

32.99

Weight (kDa)

9.51

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 23 - 204 2.7e-57 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23720
fragaria_vesca FvH4_5g03780
malus_domestica MD06G1098600.v1.1 MD14G1117800.v1.1
prunus_persica Prupe.5G112200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195831
rosa_laevigata RLG00000004084 RLG00000004085
rosa_multiflora Rmu_co8456501.1_g000001 Rmu_sc0002445.1_g000012
rosa_roxburghii Rroxscaffold_3G00260060
rosa_rugosa Rorug07G0026500
rosa_samantha Rh7AG154500 Rh7BG156300 Rh7CG160000 Rh7DG155400
rosa_wichuraiana Rw7G013200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 117
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 515
AciI CCGC 1 cut(s) 637
AfiI CCNNNNNNNGG 2 cut(s) 134, 815
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 6 cut(s) 194, 412, 496, 600, 740, 779
AjnI CCWGG 2 cut(s) 346, 562
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 4 cut(s) 6, 238, 680, 866
AluI AGCT 4 cut(s) 6, 238, 680, 866
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 2 cut(s) 283, 709
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 2 cut(s) 99, 125
ApeKI GCWGC 3 cut(s) 118, 524, 677
ArsI GACNNNNNNTTYG 4 cut(s) 415, 447, 500, 532
AsiGI ACCGGT 1 cut(s) 134
Asp700I GAANNNNTTC 2 cut(s) 198, 851
AspLEI GCGC 2 cut(s) 118, 515
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 355, 861
AsuII TTCGAA 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 130, 511, 689
BccI CCATC 2 cut(s) 265, 697
BciT130I CCWGG 2 cut(s) 348, 564
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 2 cut(s) 283, 709
BfaI CTAG 3 cut(s) 60, 90, 863
BisI GCNGC 3 cut(s) 119, 525, 678
BlsI GCNGC 3 cut(s) 120, 526, 679
Bme1390I CCNGG 2 cut(s) 348, 564
BmgT120I GGNCC 1 cut(s) 100
BmrFI CCNGG 2 cut(s) 348, 564
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 335
Bpu14I TTCGAA 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 579, 664
BsaWI WCCGGW 1 cut(s) 134
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 815
Bse118I RCCGGY 2 cut(s) 123, 134
Bse1I ACTGG 4 cut(s) 297, 528, 611, 836
BseBI CCWGG 2 cut(s) 348, 564
BseDI CCNNGG 2 cut(s) 579, 664
BseGI GGATG 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 134, 815
BseMII CTCAG 4 cut(s) 344, 559, 834, 845
BseNI ACTGG 4 cut(s) 297, 528, 611, 836
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 3 cut(s) 130, 511, 689
Bsh1236I CGCG 1 cut(s) 515
BshFI GGCC 2 cut(s) 101, 127
BshTI ACCGGT 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 2 cut(s) 124, 135
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 2 cut(s) 134, 815
BsmAI GTCTC 2 cut(s) 283, 709
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 2 cut(s) 101, 127
Bsp119I TTCGAA 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 1 cut(s) 874
BspACI CCGC 1 cut(s) 637
BspANI GGCC 2 cut(s) 101, 127
BspCNI CTCAG 4 cut(s) 343, 558, 835, 844
BspFNI CGCG 1 cut(s) 515
BspT104I TTCGAA 1 cut(s) 202
BsrFI RCCGGY 2 cut(s) 123, 134
BsrI ACTGG 4 cut(s) 297, 528, 611, 836
BssAI RCCGGY 2 cut(s) 123, 134
BssECI CCNNGG 2 cut(s) 579, 664
BssMI GATC 1 cut(s) 874
BssNAI GTATAC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 664
Bst1107I GTATAC 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 348, 564
Bst4CI ACNGT 3 cut(s) 341, 492, 538
Bst6I CTCTTC 2 cut(s) 281, 719
BstBI TTCGAA 1 cut(s) 202
BstDEI CTNAG 4 cut(s) 330, 545, 831, 843
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 708
BstFNI CGCG 1 cut(s) 515
BstHHI GCGC 2 cut(s) 118, 515
BstKTI GATC 1 cut(s) 877
BstMAI GTCTC 2 cut(s) 283, 709
BstMBI GATC 1 cut(s) 874
BstMWI GCNNNNNNNGC 5 cut(s) 51, 60, 124, 512, 521
BstNI CCWGG 2 cut(s) 348, 564
BstSCI CCNGG 2 cut(s) 346, 562
BstUI CGCG 1 cut(s) 515
BstV1I GCAGC 3 cut(s) 130, 511, 689
BstV2I GAAGAC 1 cut(s) 335
BstZ17I GTATAC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 101, 127
BtgI CCRYGG 1 cut(s) 579
BtsCI GGATG 1 cut(s) 708
BtsIMutI CAGTG 3 cut(s) 535, 553, 618
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 2 cut(s) 118, 515
Cfr10I RCCGGY 2 cut(s) 123, 134
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 1 cut(s) 504
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 6 cut(s) 48, 178, 281, 553, 587, 645
DdeI CTNAG 4 cut(s) 330, 545, 831, 843
DpnI GATC 1 cut(s) 876
DpnII GATC 1 cut(s) 874
Eam1104I CTCTTC 2 cut(s) 281, 719
EarI CTCTTC 2 cut(s) 281, 719
Eco130I CCWWGG 1 cut(s) 664
EcoRII CCWGG 2 cut(s) 346, 562
EcoT14I CCWWGG 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 6 cut(s) 51, 181, 284, 556, 590, 648
FaqI GGGAC 1 cut(s) 547
FatI CATG 6 cut(s) 47, 177, 280, 552, 586, 644
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 119, 525, 678
FokI GGATG 1 cut(s) 715
Fsp4HI GCNGC 3 cut(s) 119, 525, 678
FspBI CTAG 3 cut(s) 60, 90, 863
FspI TGCGCA 1 cut(s) 117
GlaI GCGC 2 cut(s) 117, 514
GluI GCNGC 3 cut(s) 119, 525, 678
HaeIII GGCC 2 cut(s) 101, 127
HapII CCGG 2 cut(s) 124, 135
HgaI GACGC 1 cut(s) 504
HhaI GCGC 2 cut(s) 118, 515
Hin1II CATG 6 cut(s) 51, 181, 284, 556, 590, 648
Hin6I GCGC 2 cut(s) 116, 513
HinP1I GCGC 2 cut(s) 116, 513
HinfI GANTC 4 cut(s) 199, 319, 460, 767
HpaII CCGG 2 cut(s) 124, 135
HphI GGTGA 2 cut(s) 355, 861
Hpy166II GTNNAC 3 cut(s) 87, 145, 541
Hpy188I TCNGA 5 cut(s) 477, 484, 723, 844, 887
Hpy188III TCNNGA 4 cut(s) 261, 308, 740, 776
Hpy8I GTNNAC 3 cut(s) 87, 145, 541
Hpy99I CGWCG 1 cut(s) 767
HpyAV CCTTC 2 cut(s) 188, 819
HpyCH4III ACNGT 3 cut(s) 341, 492, 538
HpyCH4V TGCA 3 cut(s) 395, 506, 677
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 60, 124, 512, 521
HpyF3I CTNAG 4 cut(s) 330, 545, 831, 843
Hsp92II CATG 6 cut(s) 51, 181, 284, 556, 590, 648
HspAI GCGC 2 cut(s) 116, 513
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 1 cut(s) 874
Lsp1109I GCAGC 3 cut(s) 130, 511, 689
LweI GCATC 1 cut(s) 382
MaeI CTAG 3 cut(s) 60, 90, 863
MaeIII GTNAC 4 cut(s) 350, 548, 572, 820
MalI GATC 1 cut(s) 876
MboI GATC 1 cut(s) 874
MboII GAAGA 8 cut(s) 19, 298, 335, 497, 628, 736, 742, 761
MfeI CAATTG 1 cut(s) 600
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 2 cut(s) 423, 600
MmeI TCCRAC 1 cut(s) 880
MnlI CCTC 8 cut(s) 138, 167, 204, 218, 288, 376, 554, 720
MroXI GAANNNNTTC 2 cut(s) 198, 851
MslI CAYNNNNRTG 2 cut(s) 135, 182
MspI CCGG 2 cut(s) 124, 135
MspR9I CCNGG 2 cut(s) 348, 564
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 2 cut(s) 348, 564
MvnI CGCG 1 cut(s) 515
MwoI GCNNNNNNNGC 5 cut(s) 51, 60, 124, 512, 521
NdeII GATC 1 cut(s) 874
NlaIII CATG 6 cut(s) 51, 181, 284, 556, 590, 648
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 548
NsbI TGCGCA 1 cut(s) 117
NspV TTCGAA 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 135
PdmI GAANNNNTTC 2 cut(s) 198, 851
PfeI GAWTC 4 cut(s) 199, 319, 460, 767
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 3 cut(s) 120, 526, 679
Psp6I CCWGG 2 cut(s) 346, 562
PspGI CCWGG 2 cut(s) 346, 562
PspPI GGNCC 1 cut(s) 100
PsrI GAACNNNNNNTAC 2 cut(s) 135, 167
PstNI CAGNNNCTG 1 cut(s) 842
RseI CAYNNNNRTG 2 cut(s) 135, 182
SatI GCNGC 3 cut(s) 119, 525, 678
Sau3AI GATC 1 cut(s) 874
Sau96I GGNCC 1 cut(s) 100
ScrFI CCNGG 2 cut(s) 348, 564
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 202
SgrAI CRCCGGYG 1 cut(s) 134
SmiMI CAYNNNNRTG 2 cut(s) 135, 182
Sse9I AATT 2 cut(s) 423, 600
SsiI CCGC 1 cut(s) 637
SspMI CTAG 3 cut(s) 60, 90, 863
StyD4I CCNGG 2 cut(s) 346, 562
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 3 cut(s) 341, 492, 538
TaqI TCGA 2 cut(s) 202, 452
TasI AATT 2 cut(s) 423, 600
TfiI GAWTC 4 cut(s) 199, 319, 460, 767
TscAI CASTG 3 cut(s) 535, 553, 618
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 3 cut(s) 118, 524, 677
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 4 cut(s) 4, 239, 633, 871
TspRI CASTG 3 cut(s) 535, 553, 618
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 2 cut(s) 198, 851
XspI CTAG 3 cut(s) 60, 90, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.