RchiOBHm_Chr6g0256991

DNA repair and recombination protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008727
Physical Location & Seq
Reverse (-)
12239346 .. 12248735
9390 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2877 bp
ATGGAAGACGAAGAAGAAGTCATCTCACTCTCCGATTCCTCCTCCGATTCCAGTTCCAGCGACGACTACACTGCCGACCCACACGACTTGGATCTCGGAGAGGAAGAAGAAGAAGAAGATCAAGAGCTCGAAAACGAACCAGAGGTTCAAAACGACGACGTACGCGAGAATCGTCGGAGACCCAAGGCCCGCCCTCCGCTTCCGCCGCCGTCCGGAAAAGATCGGAAATCGAAGAATGTCGATGCTCTCCTAAGCGGCAACCTTGTGGTGAAAAGACAGCCTCTTCTTCCACGAGTTCTGTCGGTGACGGAAGGAGCAACAGTTTGTAGGAAACCGTTTAAACCACCATGCTCCAAAGGCTATGATGATGGAAATGACCAGCTCGCTCGGCGTCTCTCAGCACGCAGACGGTTTGTTCCCTGGGGCGGTTCATCAAGTGCACCGTTTTTTCCAGTTATTGAGAGGTTTCCTAGTTTGCCAAATGATGCTGAGAAAGATGTAGTGGAAGAGAGTGTGACCCTGCCACCTGGAATTGATCCTTTGGTCTTGTGGCAACCTGAAGAATTCGAGGATGGGGATGCTAATATGGTGCAGATAGTAGTGGACCCTCTGCTTGTTCGTTTCCTTCGACCACATCAAAGAGAAGGGGTTCAATTCATGTTTGATTGTGCTGCGGGCATAAATAGTGCTGCAAATATACATGGATGTATTCTTGCAGATGATATGGGTTTGGGAAAGACATTGCAGTCAATCACATTACTTTATACCCTTCTTTACCAAGGGTTTGATGGGAAATCAATGGTTAAAAAGGCCATTATAGTCACTCCCACCAGTCTTGTGAGCAATTGGGAGGCTGAGATAAAGAAGTGGGTCGGAGACAGAGTTTGCCTCATTGCTCTGTGTGAAAGTACCAGAGATGATGTTGTTTCTGGAATTGATCAGTTCACAAGTGCTCGCAGCCGTTTGCAGGTTCTAATTGTTTCTTACGAAACATTCCGAATGCATTGTACAAAGTTTAGCCACAGTGAATCGTGTGACCTTCTTATATGTGATGAGGCTCACAGGCTAAAGAATGACCAAACGATGACGAATAGGGCATTGGCTGCTCTTTCATGCAAGCGGAGGATTTTGTTGTCAGGAACTCCAATGCAGAATGACCTAGAAGAGTTCTTTGCCATGGTCAACTTCACTAATCCAGGAATCTTAGGTGATGCTGCACATTTTCGTCGCTACTATGAGGCACCTATCATTTGTGGAAGAGAACCTAATGCCTGTGAAGAAGAGAGGAAACTAGGTCTTGAGCGCTCTTCAGAACTCAGTGCAAAAGTTAATCAGTTTATACTGCGGAGGACTAATGCACTACTTTCAAATCACCTGCCACCAAAGATAATTGAAGTTGTCTGTTGCAAGTTGACTCCTCTCCAATTGGACCTTTATAACCATTTTATACATTCCAAAAATGTTAAACGAGCAATCTCAGAAGACACAAAGCAAACAAAAATATTAGCTTATATAACTGCTTTAAAGAAGCTATGCAATCATCCAAAGCTCATCTATGATACTATAAAAAGTGGAAGTCCAGGAACTTCAGGTTTTGAGGACTGCATTCGCTTTTTCCCTCCACAGATGTTCTCTGGAAGATCTGGATCATGGACTGGCGGAGATGGGGCTTGGGTTGAACTGTCAGGAAAGATGCATGTTTTAGCTAGGTTACTTGCCCAATTACGAAAGAAGACTGATGACCGTATTGTCCTTGTCTCAAACTATACGCAGACACTGGACCTTTTTGCCCAATTATGCCGAGAAAGAAGATACCCATATTTGAGGCTTGACGGAACAACTTCTATCAGTAAAAGACAGAAATTAGTAAACCAATTCAATGACCCCTCAAAGGTTGAATTTGCATTTCTCTTAAGCAGTAAGGCTGGTGGCTGTGGTCTCAATTTGATAGGCGGAAATCGACTGGTGTTGTTTGATCCTGATTGGAATCCAGCGAATGATAAACAAGCTGCTGCTAGAGTTTGGAGGGATGGGCAAAAGAAGAGAGTATACATTTATAGATTTTTGAGTACTGGAACAATCGAAGAAAAGGTCTACCAACGTCAGATGTCAAAAGAAGGGCTTCAAAAAGTTATTCAGAAGGAACAAGCCGATAGCCCGATGGCACAGGGGAATCTTTCAATTGAGGACCTACGCGATTTGTTCACATTTCATGAGAATGTGAGGTCTGATGTGCATGAGAAGATGAACTGCAACCGTTGTCAAACTTATCATGATACACCTCAGAGTACAGCAGAGGAAGATATAAACCAATCAACTTATAAAAGCAGCGAGTCTGCACTAGAAATCTCTGATATAGGTGGATTTGCAGAAATTACTGGATGCTTACAGAAGTTAAAGAGCTCAGAAAAGCAGATCGGGACACCTCTAGAGGAAGATTTAAGTAACTGGGGGCATCATTTCTTCTCTACTTCAGTACCCGATGCTATTCTCCAAGCTTCAGCTGGTGATGAGGTCACATTTGTTTTTACAAACCAAGTGGACGGGAAGCTTGTGCCTATAGAATCAAAAGCAAGTCCAAAGATGCAGGGAGAAGAAGGAAAAGAGAATATTTTCAAATCAAAGCAAAACCTGAATCAGAAATCCATGCTAATGTCTTGGCAAAGAAAACCACTTGAATCTCTTTCTTCAAGTGTAAATACTGCCAGAAGCACCTTATCAGCCCCTTTCAGGCCCTCACAAAACACCACTGTGCAATCAGGGATAACCTCTATAAAGGGTTCAGTAGCATTGAAGCCTAAACTCTCTCTTGGAAATCGGTTGCCCCAGAAAAGATCTTCTCCTGATACTGTTGAACATGATGATGATTTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

958

Amino Acids

107.41

Weight (kDa)

6.01

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 210 - 382 8.7e-09 Type III restriction enzyme, res subunit
SNF2-rel_dom PF00176 212 - 517 5.4e-71 SNF2-related domain
DEAD PF00270 231 - 389 1.4e-08 DEAD/DEAH box helicase
Helicase_C PF00271 564 - 678 5.5e-20 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1437, 2322
AarI CACCTGC 1 cut(s) 1383
AasI GACNNNNNNGTC 2 cut(s) 745, 1748
Acc36I ACCTGC 2 cut(s) 958, 1383
AccB1I GGYRCC 1 cut(s) 1240
AccI GTMKAC 2 cut(s) 2049, 2094
AccII CGCG 2 cut(s) 165, 2196
AccIII TCCGGA 1 cut(s) 212
AclWI GGATC 4 cut(s) 99, 530, 1654, 1970
AcsI RAATTY 2 cut(s) 563, 1898
AcuI CTGAAG 5 cut(s) 579, 1293, 1572, 2457, 2484
AcyI GRCGYC 1 cut(s) 391
AfaI GTAC 6 cut(s) 162, 910, 1009, 2071, 2290, 2478
AfeI AGCGCT 1 cut(s) 1304
AfiI CCNNNNNNNGG 5 cut(s) 212, 425, 967, 1891, 2730
AflII CTTAAG 1 cut(s) 1912
AjnI CCWGG 4 cut(s) 419, 526, 1195, 1579
AjuI GAANNNNNNNTTGG 2 cut(s) 1082, 1114
AleI CACNNNNGTG 1 cut(s) 2750
Alw21I GWGCWC 4 cut(s) 129, 442, 955, 2405
Alw26I GTCTC 5 cut(s) 172, 398, 870, 1762, 1943
Alw44I GTGCAC 1 cut(s) 438
AlwI GGATC 4 cut(s) 99, 530, 1654, 1970
AlwNI CAGNNNCTG 1 cut(s) 1777
Aor13HI TCCGGA 1 cut(s) 212
Aor51HI AGCGCT 1 cut(s) 1304
AoxI GGCC 3 cut(s) 186, 810, 2732
ApaLI GTGCAC 1 cut(s) 438
ApeKI GCWGC 8 cut(s) 671, 689, 957, 1103, 1214, 2009, 2012, 2328
ApoI RAATTY 2 cut(s) 563, 1898
ArsI GACNNNNNNTTYG 3 cut(s) 35, 2076, 2108
Asp700I GAANNNNTTC 4 cut(s) 648, 1840, 2121, 2612
AspLEI GCGC 1 cut(s) 1305
AspS9I GGNCC 6 cut(s) 187, 604, 1429, 1780, 2188, 2733
AsuHPI GGTGA 5 cut(s) 280, 316, 1220, 1364, 2519
AvaII GGWCC 4 cut(s) 604, 1429, 1780, 2188
BaeGI GKGCMC 1 cut(s) 442
BaeI ACNNNNGTAYC 2 cut(s) 2460, 2493
BanI GGYRCC 1 cut(s) 1240
BanII GRGCYC 2 cut(s) 129, 2405
BarI GAAGNNNNNNTAC 2 cut(s) 2033, 2065
BauI CACGAG 1 cut(s) 291
BbsI GAAGAC 3 cut(s) 12, 1488, 1739
Bbv12I GWGCWC 4 cut(s) 129, 442, 955, 2405
BbvI GCAGC 8 cut(s) 658, 676, 969, 1090, 1201, 1996, 1999, 2340
BccI CCATC 6 cut(s) 362, 566, 782, 1658, 2024, 2155
BceAI ACGGC 2 cut(s) 193, 945
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 4 cut(s) 421, 528, 1197, 1581
BclI TGATCA 1 cut(s) 937
BcoDI GTCTC 5 cut(s) 172, 398, 870, 1762, 1943
BfaI CTAG 7 cut(s) 471, 1160, 1292, 1707, 2016, 2342, 2429
BfmI CTRYAG 1 cut(s) 2559
BfoI RGCGCY 1 cut(s) 1306
BfrI CTTAAG 1 cut(s) 1912
BfuAI ACCTGC 2 cut(s) 958, 1383
BglII AGATCT 2 cut(s) 1640, 2834
BmcAI AGTACT 1 cut(s) 2071
Bme1390I CCNGG 4 cut(s) 421, 528, 1197, 1581
Bme18I GGWCC 4 cut(s) 604, 1429, 1780, 2188
BmgT120I GGNCC 6 cut(s) 187, 604, 1429, 1780, 2188, 2733
BmiI GGNNCC 2 cut(s) 606, 1242
BmrFI CCNGG 4 cut(s) 421, 528, 1197, 1581
BmrI ACTGGG 1 cut(s) 2458
BmsI GCATC 9 cut(s) 232, 475, 568, 1201, 1683, 2372, 2464, 2473, 2574
BmuI ACTGGG 1 cut(s) 2458
BpiI GAAGAC 3 cut(s) 12, 1488, 1739
BplI GAGNNNNNCTC 2 cut(s) 873, 905
Bpu10I CCTNAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 1319
BsaBI GATNNNNATC 2 cut(s) 1645, 1986
BsaHI GRCGYC 1 cut(s) 391
BsaI GGTCTC 2 cut(s) 172, 1943
BsaJI CCNNGG 5 cut(s) 183, 419, 420, 778, 1176
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 4 cut(s) 306, 336, 867, 897
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 425, 967, 1891, 2730
Bse1I ACTGG 9 cut(s) 51, 452, 831, 1660, 1782, 1968, 2077, 2383, 2453
Bse3DI GCAATG 2 cut(s) 740, 891
Bse8I GATNNNNATC 2 cut(s) 1645, 1986
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 4 cut(s) 421, 528, 1197, 1581
BseDI CCNNGG 5 cut(s) 183, 419, 420, 778, 1176
BseGI GGATG 6 cut(s) 577, 583, 710, 1540, 2035, 2387
BseJI GATNNNNATC 2 cut(s) 1645, 1986
BseLI CCNNNNNNNGG 5 cut(s) 212, 425, 967, 1891, 2730
BseMI GCAATG 2 cut(s) 740, 891
BseMII CTCAG 7 cut(s) 411, 480, 846, 1330, 1491, 2297, 2418
BseNI ACTGG 9 cut(s) 51, 452, 831, 1660, 1782, 1968, 2077, 2383, 2453
BseRI GAGGAG 2 cut(s) 31, 1407
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 8 cut(s) 658, 676, 969, 1090, 1201, 1996, 1999, 2340
BsgI GTGCAG 3 cut(s) 611, 1200, 2322
Bsh1236I CGCG 2 cut(s) 165, 2196
BshFI GGCC 3 cut(s) 188, 812, 2734
BshNI GGYRCC 1 cut(s) 1240
BsiHKAI GWGCWC 4 cut(s) 129, 442, 955, 2405
BsiSI CCGG 1 cut(s) 213
BsiWI CGTACG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 2434
BslI CCNNNNNNNGG 5 cut(s) 212, 425, 967, 1891, 2730
BsmAI GTCTC 5 cut(s) 172, 398, 870, 1762, 1943
BsmBI CGTCTC 1 cut(s) 398
BsmFI GGGAC 1 cut(s) 2434
BsmI GAATGC 2 cut(s) 1005, 1605
BsnI GGCC 3 cut(s) 188, 812, 2734
Bso31I GGTCTC 2 cut(s) 172, 1943
Bsp1286I GDGCHC 4 cut(s) 129, 442, 955, 2405
Bsp13I TCCGGA 1 cut(s) 212
Bsp1407I TGTACA 1 cut(s) 1007
Bsp19I CCATGG 1 cut(s) 1176
BspANI GGCC 3 cut(s) 188, 812, 2734
BspCNI CTCAG 7 cut(s) 410, 481, 847, 1329, 1490, 2296, 2417
BspEI TCCGGA 1 cut(s) 212
BspFNI CGCG 2 cut(s) 165, 2196
BspHI TCATGA 2 cut(s) 2212, 2272
BspLI GGNNCC 2 cut(s) 606, 1242
BspMI ACCTGC 2 cut(s) 958, 1383
BspPI GGATC 4 cut(s) 99, 530, 1654, 1970
BspQI GCTCTTC 1 cut(s) 1312
BspT107I GGYRCC 1 cut(s) 1240
BspTI CTTAAG 1 cut(s) 1912
BspTNI GGTCTC 2 cut(s) 172, 1943
BsrDI GCAATG 2 cut(s) 740, 891
BsrGI TGTACA 1 cut(s) 1007
BsrI ACTGG 9 cut(s) 51, 452, 831, 1660, 1782, 1968, 2077, 2383, 2453
BssECI CCNNGG 5 cut(s) 183, 419, 420, 778, 1176
BssNAI GTATAC 1 cut(s) 2050
BssNI GRCGYC 1 cut(s) 391
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 3 cut(s) 183, 778, 1176
Bst1107I GTATAC 1 cut(s) 2050
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 4 cut(s) 421, 528, 1197, 1581
Bst6I CTCTTC 7 cut(s) 288, 501, 1158, 1252, 1275, 1312, 2036
BstACI GRCGYC 1 cut(s) 391
BstAFI CTTAAG 1 cut(s) 1912
BstAPI GCANNNNNTGC 1 cut(s) 1103
BstAUI TGTACA 1 cut(s) 1007
BstC8I GCNNGC 6 cut(s) 190, 384, 403, 676, 955, 1118
BstDEI CTNAG 9 cut(s) 251, 397, 489, 855, 1204, 1316, 1477, 2283, 2404
BstDSI CCRYGG 1 cut(s) 1176
BstF5I GGATG 6 cut(s) 577, 583, 710, 1540, 2035, 2387
BstFNI CGCG 2 cut(s) 165, 2196
BstH2I RGCGCY 1 cut(s) 1306
BstHHI GCGC 1 cut(s) 1305
BstMAI GTCTC 5 cut(s) 172, 398, 870, 1762, 1943
BstMWI GCNNNNNNNGC 4 cut(s) 205, 357, 388, 1103
BstNI CCWGG 4 cut(s) 421, 528, 1197, 1581
BstNSI RCATGY 1 cut(s) 1700
BstSCI CCNGG 4 cut(s) 419, 526, 1195, 1579
BstSFI CTRYAG 1 cut(s) 2559
BstSLI GKGCMC 1 cut(s) 442
BstUI CGCG 2 cut(s) 165, 2196
BstV1I GCAGC 8 cut(s) 658, 676, 969, 1090, 1201, 1996, 1999, 2340
BstV2I GAAGAC 3 cut(s) 12, 1488, 1739
BstX2I RGATCY 3 cut(s) 91, 1640, 2834
BstYI RGATCY 3 cut(s) 91, 1640, 2834
BstZ17I GTATAC 1 cut(s) 2050
BsuRI GGCC 3 cut(s) 188, 812, 2734
BtgI CCRYGG 1 cut(s) 1176
BtsCI GGATG 6 cut(s) 577, 583, 710, 1540, 2035, 2387
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 5 cut(s) 69, 1030, 1324, 1775, 2748
BveI ACCTGC 2 cut(s) 958, 1383
Cac8I GCNNGC 6 cut(s) 190, 384, 403, 676, 955, 1118
CaiI CAGNNNCTG 1 cut(s) 1777
CciI TCATGA 2 cut(s) 2212, 2272
CfoI GCGC 1 cut(s) 1305
Cfr13I GGNCC 6 cut(s) 187, 604, 1429, 1780, 2188, 2733
CseI GACGC 1 cut(s) 380
Csp6I GTAC 6 cut(s) 161, 909, 1008, 2070, 2289, 2477
CspCI CAANNNNNGTGG 6 cut(s) 69, 104, 817, 852, 2520, 2555
CviQI GTAC 6 cut(s) 161, 909, 1008, 2070, 2289, 2477
DdeI CTNAG 9 cut(s) 251, 397, 489, 855, 1204, 1316, 1477, 2283, 2404
DraI TTTAAA 2 cut(s) 340, 1524
DrdI GACNNNNNNGTC 2 cut(s) 745, 1748
DseDI GACNNNNNNGTC 2 cut(s) 745, 1748
Eam1104I CTCTTC 7 cut(s) 288, 501, 1158, 1252, 1275, 1312, 2036
EarI CTCTTC 7 cut(s) 288, 501, 1158, 1252, 1275, 1312, 2036
EciI GGCGGA 3 cut(s) 192, 1674, 1968
Ecl136II GAGCTC 2 cut(s) 127, 2403
Eco130I CCWWGG 3 cut(s) 183, 778, 1176
Eco24I GRGCYC 2 cut(s) 129, 2405
Eco31I GGTCTC 2 cut(s) 172, 1943
Eco47I GGWCC 4 cut(s) 604, 1429, 1780, 2188
Eco47III AGCGCT 1 cut(s) 1304
Eco53kI GAGCTC 2 cut(s) 127, 2403
Eco57I CTGAAG 5 cut(s) 579, 1293, 1572, 2457, 2484
EcoICRI GAGCTC 2 cut(s) 127, 2403
EcoO109I RGGNCCY 2 cut(s) 2188, 2733
EcoRI GAATTC 1 cut(s) 563
EcoRII CCWGG 4 cut(s) 419, 526, 1195, 1579
EcoT14I CCWWGG 3 cut(s) 183, 778, 1176
EcoT22I ATGCAT 2 cut(s) 1005, 1698
EcoT38I GRGCYC 2 cut(s) 129, 2405
ErhI CCWWGG 3 cut(s) 183, 778, 1176
Esp3I CGTCTC 1 cut(s) 398
FalI AAGNNNNNCTT 2 cut(s) 2106, 2138
FaqI GGGAC 1 cut(s) 2434
FauI CCCGC 2 cut(s) 197, 667
FbaI TGATCA 1 cut(s) 937
FblI GTMKAC 2 cut(s) 2049, 2094
FokI GGATG 6 cut(s) 584, 590, 717, 1527, 2042, 2394
FriOI GRGCYC 2 cut(s) 129, 2405
FspBI CTAG 7 cut(s) 471, 1160, 1292, 1707, 2016, 2342, 2429
GlaI GCGC 1 cut(s) 1304
HaeII RGCGCY 1 cut(s) 1306
HaeIII GGCC 3 cut(s) 188, 812, 2734
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 380
HhaI GCGC 1 cut(s) 1305
Hin1I GRCGYC 1 cut(s) 391
Hin6I GCGC 1 cut(s) 1303
HinP1I GCGC 1 cut(s) 1303
HincII GTYRAC 2 cut(s) 1183, 1413
HindII GTYRAC 2 cut(s) 1183, 1413
HindIII AAGCTT 2 cut(s) 2496, 2549
HpaII CCGG 1 cut(s) 213
HphI GGTGA 5 cut(s) 280, 316, 1220, 1364, 2519
Hpy99I CGWCG 5 cut(s) 65, 158, 161, 177, 1230
HpyAV CCTTC 8 cut(s) 305, 635, 638, 779, 1049, 2111, 2134, 2591
HpyCH4IV ACGT 2 cut(s) 159, 2101
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 357, 388, 1103
HpyF3I CTNAG 9 cut(s) 251, 397, 489, 855, 1204, 1316, 1477, 2283, 2404
HpySE526I ACGT 2 cut(s) 159, 2101
Hsp92I GRCGYC 1 cut(s) 391
HspAI GCGC 1 cut(s) 1303
Kpn2I TCCGGA 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 937
LguI GCTCTTC 1 cut(s) 1312
LmnI GCTCC 2 cut(s) 314, 356
Lsp1109I GCAGC 8 cut(s) 658, 676, 969, 1090, 1201, 1996, 1999, 2340
LweI GCATC 9 cut(s) 232, 475, 568, 1201, 1683, 2372, 2464, 2473, 2574
MaeI CTAG 7 cut(s) 471, 1160, 1292, 1707, 2016, 2342, 2429
MaeII ACGT 2 cut(s) 159, 2101
MaeIII GTNAC 7 cut(s) 304, 514, 820, 1034, 1710, 2444, 2515
MfeI CAATTG 3 cut(s) 844, 1424, 2181
MflI RGATCY 3 cut(s) 91, 1640, 2834
MhlI GDGCHC 4 cut(s) 129, 442, 955, 2405
MlyI GAGTC 2 cut(s) 1408, 2342
MmeI TCCRAC 2 cut(s) 155, 853
Mph1103I ATGCAT 2 cut(s) 1005, 1698
MroI TCCGGA 1 cut(s) 212
MroXI GAANNNNTTC 4 cut(s) 648, 1840, 2121, 2612
MseI TTAA 8 cut(s) 339, 804, 1329, 1464, 1523, 1913, 2396, 2441
MslI CAYNNNNRTG 4 cut(s) 2217, 2651, 2750, 2862
MspA1I CMGCKG 1 cut(s) 2504
MspCI CTTAAG 1 cut(s) 1912
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 4 cut(s) 421, 528, 1197, 1581
MssI GTTTAAAC 1 cut(s) 340
MunI CAATTG 3 cut(s) 844, 1424, 2181
Mva1269I GAATGC 2 cut(s) 1005, 1605
MvaI CCWGG 4 cut(s) 421, 528, 1197, 1581
MvnI CGCG 2 cut(s) 165, 2196
MwoI GCNNNNNNNGC 4 cut(s) 205, 357, 388, 1103
NcoI CCATGG 1 cut(s) 1176
NlaIV GGNNCC 2 cut(s) 606, 1242
NmeAIII GCCGAG 2 cut(s) 367, 1826
NmuCI GTSAC 5 cut(s) 304, 514, 820, 1034, 2515
NsiI ATGCAT 2 cut(s) 1005, 1698
NspI RCATGY 1 cut(s) 1700
OliI CACNNNNGTG 1 cut(s) 2750
PagI TCATGA 2 cut(s) 2212, 2272
PaqCI CACCTGC 1 cut(s) 1383
PasI CCCWGGG 1 cut(s) 420
PciSI GCTCTTC 1 cut(s) 1312
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 169, 625
PctI GAATGC 2 cut(s) 1005, 1605
PdmI GAANNNNTTC 4 cut(s) 648, 1840, 2121, 2612
Pfl23II CGTACG 1 cut(s) 160
PfoI TCCNGGA 2 cut(s) 1195, 1579
PleI GAGTC 2 cut(s) 1408, 2341
PmeI GTTTAAAC 1 cut(s) 340
PpsI GAGTC 2 cut(s) 1408, 2341
PpuMI RGGWCCY 1 cut(s) 2188
PsiI TTATAA 2 cut(s) 1437, 2322
Psp124BI GAGCTC 2 cut(s) 129, 2405
Psp5II RGGWCCY 1 cut(s) 2188
Psp6I CCWGG 4 cut(s) 419, 526, 1195, 1579
PspGI CCWGG 4 cut(s) 419, 526, 1195, 1579
PspLI CGTACG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 606, 1242
PspPI GGNCC 6 cut(s) 187, 604, 1429, 1780, 2188, 2733
PspPPI RGGWCCY 1 cut(s) 2188
PstNI CAGNNNCTG 1 cut(s) 1777
PsuI RGATCY 3 cut(s) 91, 1640, 2834
PvuII CAGCTG 1 cut(s) 2504
RsaI GTAC 6 cut(s) 162, 910, 1009, 2071, 2290, 2478
RsaNI GTAC 6 cut(s) 161, 909, 1008, 2070, 2289, 2477
RseI CAYNNNNRTG 4 cut(s) 2217, 2651, 2750, 2862
SacI GAGCTC 2 cut(s) 129, 2405
SapI GCTCTTC 1 cut(s) 1312
SaqAI TTAA 8 cut(s) 339, 804, 1329, 1464, 1523, 1913, 2396, 2441
Sau96I GGNCC 6 cut(s) 187, 604, 1429, 1780, 2188, 2733
ScaI AGTACT 1 cut(s) 2071
SchI GAGTC 2 cut(s) 1408, 2342
ScrFI CCNGG 4 cut(s) 421, 528, 1197, 1581
SduI GDGCHC 4 cut(s) 129, 442, 955, 2405
SfaNI GCATC 9 cut(s) 232, 475, 568, 1201, 1683, 2372, 2464, 2473, 2574
SfcI CTRYAG 1 cut(s) 2559
SinI GGWCC 4 cut(s) 604, 1429, 1780, 2188
SmiMI CAYNNNNRTG 4 cut(s) 2217, 2651, 2750, 2862
SmlI CTYRAG 2 cut(s) 1298, 1912
SmoI CTYRAG 2 cut(s) 1298, 1912
SspI AATATT 2 cut(s) 1503, 2611
SspMI CTAG 7 cut(s) 471, 1160, 1292, 1707, 2016, 2342, 2429
SstI GAGCTC 2 cut(s) 129, 2405
StyD4I CCNGG 4 cut(s) 419, 526, 1195, 1579
StyI CCWWGG 3 cut(s) 183, 778, 1176
TaiI ACGT 2 cut(s) 162, 2104
TaqI TCGA 7 cut(s) 129, 230, 240, 567, 628, 1960, 2082
TatI WGTACW 3 cut(s) 1007, 2069, 2288
TauI GCSGC 2 cut(s) 208, 258
Tru1I TTAA 8 cut(s) 339, 804, 1329, 1464, 1523, 1913, 2396, 2441
Tru9I TTAA 8 cut(s) 339, 804, 1329, 1464, 1523, 1913, 2396, 2441
TscAI CASTG 5 cut(s) 76, 1030, 1324, 1782, 2755
TseFI GTSAC 5 cut(s) 304, 514, 820, 1034, 2515
TseI GCWGC 8 cut(s) 671, 689, 957, 1103, 1214, 2009, 2012, 2328
Tsp45I GTSAC 5 cut(s) 304, 514, 820, 1034, 2515
TspDTI ATGAA 5 cut(s) 420, 646, 1101, 2201, 2261
TspGWI ACGGA 2 cut(s) 323, 1848
TspRI CASTG 5 cut(s) 76, 1030, 1324, 1782, 2755
Vha464I CTTAAG 1 cut(s) 1912
VneI GTGCAC 1 cut(s) 438
VpaK11BI GGWCC 4 cut(s) 604, 1429, 1780, 2188
XapI RAATTY 2 cut(s) 563, 1898
XbaI TCTAGA 1 cut(s) 2428
XceI RCATGY 1 cut(s) 1700
XcmI CCANNNNNNNNNTGG 2 cut(s) 785, 2501
XmiI GTMKAC 2 cut(s) 2049, 2094
XmnI GAANNNNTTC 4 cut(s) 648, 1840, 2121, 2612
XspI CTAG 7 cut(s) 471, 1160, 1292, 1707, 2016, 2342, 2429
ZrmI AGTACT 1 cut(s) 2071
Zsp2I ATGCAT 2 cut(s) 1005, 1698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.