Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012663

Physical Location & Seq

Genomic Coordinates Reverse (-)

14682878 .. 14684455

Gene Structure 1578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGATCAAAGAAAGCAGCACTTGATCACAGCAACCATTCCATTTCTGATCATTCTTCTCTGTTTGGCAAACAAGACCTTAGCATCATCACTGCCCGATAAGAAGCACTTTGTGCTAGTTCATGGGTCATGCCATGGAGCTTGGTCCTGGTACAAGATCGTAACCCTAATTAGGTCATCTGGTCACAACGTCACTGCTCTAGACCTAGCTGCTTCTGGAGTTGACCCACAGCAAGCTAATGATCTGCAATCAATTTCGGACTACTTCAAGCCCTTGAGGGATTTCATGGAAGCTCTTCCACAACATGAAAGGGCCATCCTTGTTGGTCATAGCCTTGGCGGGTTGGCCATTTCTCAAGCCATGGAGAGGTTTCCGAGTAAGATTTCTGTAGCTGTTTTTGTTGCTGCTTTGATGCCTGGTCCGAACCTCAACATTTCCACTCTTCAACAAGAGCAGCGTTTCTCTTTTGTCTTTCGTTTGAGTACTTGTTGCCCCTCCACAAGTGCTTTCCTCTTCCTCTTTGCCATTGCGATTAATCTATATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

182

Amino Acids

20.09

Weight (kDa)

8.77

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	34 - 142	2.2e-10	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	36 - 157	6.5e-17	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	37 - 150	7.1e-15	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012663)

Species	Orthologous Gene IDs
malus_domestica	MD05G1074300.v1.1
prunus_persica	Prupe.8G114700_v2.0.a1 Prupe.8G115000_v2.0.a1 Prupe.8G115300_v2.0.a1
pyrus_communis	pycom05g06700
rosa_chinensis	RchiOBHm_Chr4g0407461 RchiOBHm_Chr6g0259411 RchiOBHm_Chr6g0259431
rosa_laevigata	RLG00000014534
rosa_multiflora	Rmu_sc0006836.1_g000015 Rmu_ssc0000050.1_g000045
rosa_roxburghii	Rroxscaffold_7G00206700
rosa_rugosa	Rorug05G0588800 Rorug06G0097000
rosa_samantha	Rh6AG104500 Rh6BG097700 Rh6CG093600 Rh6DG087500
rosa_wichuraiana	Rw6G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	2 cut(s)	152, 484
AfiI	CCNNNNNNNGG	2 cut(s)	171, 366
AgsI	TTSAA	2 cut(s)	268, 446
AjnI	CCWGG	2 cut(s)	146, 415
AluBI	AGCT	5 cut(s)	140, 209, 236, 293, 392
AluI	AGCT	5 cut(s)	140, 209, 236, 293, 392
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	312, 345
ApeKI	GCWGC	4 cut(s)	16, 209, 404, 454
AseI	ATTAAT	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	3 cut(s)	144, 312, 419
AvaII	GGWCC	2 cut(s)	144, 419
BalI	TGGCCA	1 cut(s)	347
BbvI	GCAGC	4 cut(s)	28, 196, 391, 466
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	2 cut(s)	148, 417
BclI	TGATCA	2 cut(s)	24, 48
BfaI	CTAG	3 cut(s)	116, 200, 206
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	4 cut(s)	17, 210, 405, 455
BlsI	GCNGC	4 cut(s)	18, 211, 406, 456
BmcAI	AGTACT	1 cut(s)	484
Bme1390I	CCNGG	2 cut(s)	148, 417
Bme18I	GGWCC	2 cut(s)	144, 419
BmgT120I	GGNCC	3 cut(s)	144, 312, 419
BmrFI	CCNGG	2 cut(s)	148, 417
BmsI	GCATC	2 cut(s)	92, 402
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	79
BpuEI	CTTGAG	2 cut(s)	295, 339
BsaJI	CCNNGG	3 cut(s)	133, 334, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 366
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	148, 417
BseDI	CCNNGG	3 cut(s)	133, 334, 360
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	171, 366
BseMI	GCAATG	1 cut(s)	525
BseXI	GCAGC	4 cut(s)	28, 196, 391, 466
BshFI	GGCC	2 cut(s)	314, 347
BslI	CCNNNNNNNGG	2 cut(s)	171, 366
BsnI	GGCC	2 cut(s)	314, 347
Bsp143I	GATC	5 cut(s)	4, 24, 48, 156, 241
Bsp19I	CCATGG	2 cut(s)	133, 360
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	2 cut(s)	314, 347
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	525
BssECI	CCNNGG	3 cut(s)	133, 334, 360
BssMI	GATC	5 cut(s)	4, 24, 48, 156, 241
BssT1I	CCWWGG	3 cut(s)	133, 334, 360
Bst2UI	CCWGG	2 cut(s)	148, 417
Bst6I	CTCTTC	3 cut(s)	300, 447, 518
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	79
BstDSI	CCRYGG	2 cut(s)	133, 360
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	5 cut(s)	7, 27, 51, 159, 244
BstMBI	GATC	5 cut(s)	4, 24, 48, 156, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	2 cut(s)	148, 417
BstSCI	CCNGG	2 cut(s)	146, 415
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	28, 196, 391, 466
BsuRI	GGCC	2 cut(s)	314, 347
BtgI	CCRYGG	2 cut(s)	133, 360
BtsCI	GGATG	1 cut(s)	315
BtsI	GCAGTG	2 cut(s)	89, 192
BtsIMutI	CAGTG	2 cut(s)	89, 192
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	3 cut(s)	144, 312, 419
Csp6I	GTAC	2 cut(s)	151, 483
CviAII	CATG	7 cut(s)	122, 129, 134, 286, 305, 361, 546
CviQI	GTAC	2 cut(s)	151, 483
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	5 cut(s)	6, 26, 50, 158, 243
DpnII	GATC	5 cut(s)	4, 24, 48, 156, 241
DraIII	CACNNNGTG	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	3 cut(s)	300, 447, 518
EarI	CTCTTC	3 cut(s)	300, 447, 518
Eco130I	CCWWGG	3 cut(s)	133, 334, 360
Eco47I	GGWCC	2 cut(s)	144, 419
EcoRII	CCWGG	2 cut(s)	146, 415
EcoT14I	CCWWGG	3 cut(s)	133, 334, 360
ErhI	CCWWGG	3 cut(s)	133, 334, 360
FaeI	CATG	7 cut(s)	125, 132, 137, 289, 308, 364, 549
FalI	AAGNNNNNCTT	3 cut(s)	37, 92, 124
FatI	CATG	7 cut(s)	121, 128, 133, 285, 304, 360, 545
FauI	CCCGC	1 cut(s)	332
FbaI	TGATCA	2 cut(s)	24, 48
Fnu4HI	GCNGC	4 cut(s)	17, 210, 405, 455
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	4 cut(s)	17, 210, 405, 455
FspBI	CTAG	3 cut(s)	116, 200, 206
GluI	GCNGC	4 cut(s)	17, 210, 405, 455
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	314, 347
Hin1II	CATG	7 cut(s)	125, 132, 137, 289, 308, 364, 549
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	48, 259, 375, 423
Hpy188III	TCNNGA	2 cut(s)	200, 216
Hpy8I	GTNNAC	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	7 cut(s)	125, 132, 137, 289, 308, 364, 549
Ksp22I	TGATCA	2 cut(s)	24, 48
Kzo9I	GATC	5 cut(s)	4, 24, 48, 156, 241
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	6 cut(s)	133, 160, 165, 201, 402, 429
Lsp1109I	GCAGC	4 cut(s)	28, 196, 391, 466
LweI	GCATC	2 cut(s)	92, 402
MaeI	CTAG	3 cut(s)	116, 200, 206
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	160, 182, 190
MalI	GATC	5 cut(s)	6, 26, 50, 158, 243
MboI	GATC	5 cut(s)	4, 24, 48, 156, 241
MboII	GAAGA	4 cut(s)	47, 287, 434, 505
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	2 cut(s)	168, 252
MluNI	TGGCCA	1 cut(s)	347
MnlI	CCTC	6 cut(s)	270, 360, 437, 505, 521, 527
Mox20I	TGGCCA	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	148, 417
MvaI	CCWGG	2 cut(s)	148, 417
MwoI	GCNNNNNNNGC	1 cut(s)	112
NcoI	CCATGG	2 cut(s)	133, 360
NdeII	GATC	5 cut(s)	4, 24, 48, 156, 241
NlaIII	CATG	7 cut(s)	125, 132, 137, 289, 308, 364, 549
NmuCI	GTSAC	2 cut(s)	182, 190
PciSI	GCTCTTC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	18, 211, 406, 456
PshBI	ATTAAT	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	146, 415
PspGI	CCWGG	2 cut(s)	146, 415
PspPI	GGNCC	3 cut(s)	144, 312, 419
RsaI	GTAC	2 cut(s)	152, 484
RsaNI	GTAC	2 cut(s)	151, 483
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	4 cut(s)	17, 210, 405, 455
Sau3AI	GATC	5 cut(s)	4, 24, 48, 156, 241
Sau96I	GGNCC	3 cut(s)	144, 312, 419
ScaI	AGTACT	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	148, 417
SfaNI	GCATC	2 cut(s)	92, 402
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	144, 419
SmlI	CTYRAG	2 cut(s)	274, 354
SmoI	CTYRAG	2 cut(s)	274, 354
Sse9I	AATT	2 cut(s)	168, 252
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	3 cut(s)	116, 200, 206
StyD4I	CCNGG	2 cut(s)	146, 415
StyI	CCWWGG	3 cut(s)	133, 334, 360
TaiI	ACGT	1 cut(s)	192
TasI	AATT	2 cut(s)	168, 252
TatI	WGTACW	1 cut(s)	482
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	2 cut(s)	96, 199
TseFI	GTSAC	2 cut(s)	182, 190
TseI	GCWGC	4 cut(s)	16, 209, 404, 454
Tsp45I	GTSAC	2 cut(s)	182, 190
TspDTI	ATGAA	3 cut(s)	110, 274, 321
TspRI	CASTG	2 cut(s)	96, 199
VpaK11BI	GGWCC	2 cut(s)	144, 419
VspI	ATTAAT	1 cut(s)	534
XbaI	TCTAGA	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	3 cut(s)	116, 200, 206
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.