RchiOBHm_Chr6g0260611

repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017823
Physical Location & Seq
Reverse (-)
15603503 .. 15604583
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1005 bp
ATGAAGAGGGCTTATGACGCTTTTGAGTGCTTTAGCTTGATAATCTTTAATGCTATGAAAGGTAGAGGAGTTCAGCCGGATTCTTACACGTATGGATTGCTTATTAGTGGGATGTGTAAGGAGAGAAGGCTTGATGAAGCGTCTGGTCTTTTTGATAAAATGCTGGAAATTGGGCTGCTTCCAAGTGCTGTTACTTACAACACCCTGATTGATGGTTATTGCAATAAGGGTGTTCTGGACAGGGCTTTCGGTTATAGAGATGAGATGGTGATGAAGGGTATAATGCCGACAGTGTCAACTTACAATTTGTTGATTCATGAATTGTTTATGGAAGGTAGGGTGAGTGAAGATGATTGTATGGTTAGAGAAATGGAAGAAAAGGGAATGGTTCCTGATGCCATTACGTATAATATCTTGATTAATGGCTATTGCAGGTCTGGGAATGCAAAGAAAGCGTTTATCCTTTGCGATGAAATGTTGAGTGAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGAGAAGATACTGCGTAAGGGTGTTCTACCAGATGTTATGGATAAAATGAAGGTTCATCCAGATGAGGTGACTTACAATACCCTAATGCAAGGGCGCTGCAGGGAAGGGAAAGTTGAGGAAGCTCGGGAACTTCTGGATGAGATCAAGAGACAGGGAATTAAGCCTGATTTCATTAGTGGACATAGTAAACGGGGTGATATGAATGATGCATTCAAAGTTCGAGACGAGATGTTGAGTATAGGTTTCAATCCTACACATCTAACGTACAATGCTCTTATAAAAGGTCTATGCAAAAACCAAGAAGGTGATCTTGCTCAAGAGCTCCTTAAAGAAATGGTGAGCAGAGGGATTACTCCCAATGACAGCACATATTACTCTCTGATTGAGGGAATTGAGAATGTTGAGGAATTTCTCAGAAAGGGTGATTCATGA

Protein Analysis

334

Amino Acids

38.04

Weight (kDa)

5.18

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 14 - 106 4.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 15 - 40 3e-07 PPR repeat family
PPR_3 PF13812 15 - 74 8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 22 - 54 9.7e-12 PPR repeat
PPR PF01535 29 - 59 3.7e-07 PPR repeat
PPR_2 PF13041 34 - 75 1.6e-12 PPR repeat family
PPR_3 PF13812 50 - 105 1.8e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 58 - 90 1.7e-11 PPR repeat
PPR_2 PF13041 61 - 108 1.2e-14 PPR repeat family
PPR PF01535 64 - 94 1e-07 PPR repeat
PPR_2 PF13041 96 - 145 9.4e-14 PPR repeat family
PPR_long PF17177 120 - 183 4e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 121 - 180 3.7e-10 Pentatricopeptide repeat domain
TPR_24 PF23276 124 - 186 1.6e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 127 - 159 1.9e-13 PPR repeat
PPR_2 PF13041 131 - 179 5.9e-16 PPR repeat family
PPR PF01535 134 - 164 3.8e-09 PPR repeat
PPR_2 PF13041 170 - 203 1e-05 PPR repeat family
PPR_1 PF12854 209 - 239 2.1e-11 PPR repeat
PPR_2 PF13041 211 - 247 3.5e-12 PPR repeat family
PPR PF01535 214 - 244 2.5e-07 PPR repeat
PPR_2 PF13041 249 - 289 2.3e-11 PPR repeat family
PPR_3 PF13812 264 - 320 2.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 272 - 304 9.2e-09 PPR repeat
PPR PF01535 279 - 308 1.4e-07 PPR repeat
PPR_2 PF13041 279 - 321 4e-13 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 851
Acc36I ACCTGC 1 cut(s) 423
AcsI RAATTY 1 cut(s) 980
AfaI GTAC 1 cut(s) 839
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 2 cut(s) 787, 820
AluBI AGCT 3 cut(s) 36, 695, 895
AluI AGCT 3 cut(s) 36, 695, 895
Alw21I GWGCWC 1 cut(s) 897
Alw26I GTCTC 2 cut(s) 715, 789
Ama87I CYCGRG 1 cut(s) 696
ApeKI GCWGC 2 cut(s) 175, 669
ApoI RAATTY 1 cut(s) 980
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AseI ATTAAT 1 cut(s) 420
AspLEI GCGC 1 cut(s) 669
AsuHPI GGTGA 6 cut(s) 280, 352, 652, 779, 890, 922
AvaI CYCGRG 1 cut(s) 696
BanII GRGCYC 2 cut(s) 498, 897
Bbv12I GWGCWC 1 cut(s) 897
BbvI GCAGC 2 cut(s) 162, 656
BccI CCATC 2 cut(s) 206, 259
BcoDI GTCTC 2 cut(s) 715, 789
BfmI CTRYAG 1 cut(s) 670
BfoI RGCGCY 1 cut(s) 670
BfuAI ACCTGC 1 cut(s) 423
BisI GCNGC 2 cut(s) 176, 670
BlsI GCNGC 2 cut(s) 177, 671
BmeT110I CYCGRG 1 cut(s) 696
BmiI GGNNCC 1 cut(s) 390
BmsI GCATC 2 cut(s) 385, 769
BpuEI CTTGAG 1 cut(s) 873
BsaAI YACGTR 2 cut(s) 90, 405
BseGI GGATG 3 cut(s) 117, 628, 715
BseMII CTCAG 1 cut(s) 1000
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 162, 656
BsiHKAI GWGCWC 1 cut(s) 897
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 715, 789
BsmBI CGTCTC 1 cut(s) 789
BsmI GAATGC 2 cut(s) 448, 782
BsoBI CYCGRG 1 cut(s) 696
Bsp1286I GDGCHC 2 cut(s) 498, 897
Bsp143I GATC 2 cut(s) 714, 880
BspCNI CTCAG 1 cut(s) 999
BspHI TCATGA 2 cut(s) 316, 1001
BspLI GGNNCC 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 674
BspMI ACCTGC 1 cut(s) 423
BssMI GATC 2 cut(s) 714, 880
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 539
BstBAI YACGTR 2 cut(s) 90, 405
BstDEI CTNAG 2 cut(s) 501, 986
BstF5I GGATG 3 cut(s) 117, 628, 715
BstH2I RGCGCY 1 cut(s) 670
BstHHI GCGC 1 cut(s) 669
BstKTI GATC 2 cut(s) 717, 883
BstMAI GTCTC 2 cut(s) 715, 789
BstMBI GATC 2 cut(s) 714, 880
BstMWI GCNNNNNNNGC 2 cut(s) 17, 452
BstSFI CTRYAG 1 cut(s) 670
BstSNI TACGTA 1 cut(s) 405
BstV1I GCAGC 2 cut(s) 162, 656
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 3 cut(s) 117, 628, 715
BtsIMutI CAGTG 1 cut(s) 297
BveI ACCTGC 1 cut(s) 423
CciI TCATGA 2 cut(s) 316, 1001
CfoI GCGC 1 cut(s) 669
CseI GACGC 2 cut(s) 26, 129
Csp6I GTAC 1 cut(s) 838
CviAII CATG 2 cut(s) 317, 1002
CviQI GTAC 1 cut(s) 838
DdeI CTNAG 2 cut(s) 501, 986
DpnI GATC 2 cut(s) 716, 882
DpnII GATC 2 cut(s) 714, 880
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Ecl136II GAGCTC 1 cut(s) 895
Eco105I TACGTA 1 cut(s) 405
Eco24I GRGCYC 2 cut(s) 498, 897
Eco53kI GAGCTC 1 cut(s) 895
Eco88I CYCGRG 1 cut(s) 696
EcoICRI GAGCTC 1 cut(s) 895
EcoT22I ATGCAT 1 cut(s) 784
EcoT38I GRGCYC 2 cut(s) 498, 897
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 2 cut(s) 320, 1005
FalI AAGNNNNNCTT 4 cut(s) 867, 899, 882, 914
FatI CATG 2 cut(s) 316, 1001
Fnu4HI GCNGC 2 cut(s) 176, 670
FokI GGATG 3 cut(s) 124, 615, 722
FriOI GRGCYC 2 cut(s) 498, 897
Fsp4HI GCNGC 2 cut(s) 176, 670
GlaI GCGC 1 cut(s) 668
GluI GCNGC 2 cut(s) 176, 670
HaeII RGCGCY 1 cut(s) 670
HapII CCGG 1 cut(s) 77
HgaI GACGC 2 cut(s) 26, 129
HhaI GCGC 1 cut(s) 669
Hin1II CATG 2 cut(s) 320, 1005
Hin6I GCGC 1 cut(s) 667
HinP1I GCGC 1 cut(s) 667
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 3 cut(s) 80, 313, 998
HpaII CCGG 1 cut(s) 77
HphI GGTGA 6 cut(s) 280, 352, 652, 779, 890, 922
Hpy166II GTNNAC 3 cut(s) 297, 752, 761
Hpy188I TCNGA 2 cut(s) 954, 989
Hpy8I GTNNAC 3 cut(s) 297, 752, 761
HpyAV CCTTC 7 cut(s) 120, 268, 326, 479, 616, 671, 869
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 3 cut(s) 89, 404, 836
HpyCH4V TGCA 7 cut(s) 222, 432, 446, 661, 672, 782, 864
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 452
HpyF3I CTNAG 2 cut(s) 501, 986
HpySE526I ACGT 3 cut(s) 89, 404, 836
Hsp92II CATG 2 cut(s) 320, 1005
HspAI GCGC 1 cut(s) 667
Kzo9I GATC 2 cut(s) 714, 880
LmnI GCTCC 1 cut(s) 900
Lsp1109I GCAGC 2 cut(s) 162, 656
LweI GCATC 2 cut(s) 385, 769
MaeII ACGT 3 cut(s) 89, 404, 836
MaeIII GTNAC 2 cut(s) 190, 640
MalI GATC 2 cut(s) 716, 882
MboI GATC 2 cut(s) 714, 880
MboII GAAGA 5 cut(s) 16, 359, 386, 556, 589
MhlI GDGCHC 2 cut(s) 498, 897
MluCI AATT 6 cut(s) 168, 304, 320, 729, 963, 980
MnlI CCTC 7 cut(s) 59, 550, 631, 682, 911, 952, 970
Mph1103I ATGCAT 1 cut(s) 784
MseI TTAA 4 cut(s) 48, 420, 732, 900
MslI CAYNNNNRTG 1 cut(s) 633
MspI CCGG 1 cut(s) 77
Mva1269I GAATGC 2 cut(s) 448, 782
MwoI GCNNNNNNNGC 2 cut(s) 17, 452
NdeII GATC 2 cut(s) 714, 880
NlaIII CATG 2 cut(s) 320, 1005
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 640
NsiI ATGCAT 1 cut(s) 784
PagI TCATGA 2 cut(s) 316, 1001
PctI GAATGC 2 cut(s) 448, 782
PfeI GAWTC 3 cut(s) 80, 313, 998
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 2 cut(s) 177, 671
Ppu21I YACGTR 2 cut(s) 90, 405
PshBI ATTAAT 1 cut(s) 420
PsiI TTATAA 1 cut(s) 851
Psp124BI GAGCTC 1 cut(s) 897
PspN4I GGNNCC 1 cut(s) 390
PstI CTGCAG 1 cut(s) 674
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 1 cut(s) 839
RsaNI GTAC 1 cut(s) 838
RseI CAYNNNNRTG 1 cut(s) 633
SacI GAGCTC 1 cut(s) 897
SaqAI TTAA 4 cut(s) 48, 420, 732, 900
SatI GCNGC 2 cut(s) 176, 670
Sau3AI GATC 2 cut(s) 714, 880
SduI GDGCHC 2 cut(s) 498, 897
SfaNI GCATC 2 cut(s) 385, 769
SfcI CTRYAG 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 888
SmoI CTYRAG 1 cut(s) 888
SnaBI TACGTA 1 cut(s) 405
Sse9I AATT 6 cut(s) 168, 304, 320, 729, 963, 980
SstI GAGCTC 1 cut(s) 897
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 3 cut(s) 92, 407, 839
TaqI TCGA 1 cut(s) 793
TasI AATT 6 cut(s) 168, 304, 320, 729, 963, 980
TfiI GAWTC 3 cut(s) 80, 313, 998
Tru1I TTAA 4 cut(s) 48, 420, 732, 900
Tru9I TTAA 4 cut(s) 48, 420, 732, 900
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 640
TseI GCWGC 2 cut(s) 175, 669
Tsp45I GTSAC 1 cut(s) 640
TspRI CASTG 1 cut(s) 297
Tth111I GACNNNGTC 1 cut(s) 292
VspI ATTAAT 1 cut(s) 420
XapI RAATTY 1 cut(s) 980
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.