RchiOBHm_Chr6g0271701

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
31584846 .. 31585968
1123 bp
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UTR
Exon/CDS
Intron
PRQ24370

Sequence Viewer

Length: 144 bp
ATGTTGTACACGAACACCTGCCTTCATTTGTTGAGGAACCTATCGGAGAGCCCCAGAAGTCGGCCTGCTTCCATATTACGGGCTGCACCATCTGTGGCTCCTCAACATTCAGTTGACGAGACTACACTACTAGCTTCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

47

Amino Acids

5.18

Weight (kDa)

8.0

Isoelectric Point (pI)

72.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 26
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 60, 78
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 113
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 38, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 78
BseLI CCNNNNNNNGG 2 cut(s) 60, 78
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 60, 78
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 53
Bsp1407I TGTACA 1 cut(s) 6
BspANI GGCC 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 38, 99
BspMI ACCTGC 1 cut(s) 26
BsrGI TGTACA 1 cut(s) 6
BstAUI TGTACA 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 64
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 5 cut(s) 51, 64, 83, 98, 134
CviKI_1 RGCY 5 cut(s) 51, 64, 83, 98, 134
CviQI GTAC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 53
FaiI YATR 2 cut(s) 74, 139
Fnu4HI GCNGC 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 64
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 9, 115
Hpy188I TCNGA 1 cut(s) 46
Hpy8I GTNNAC 2 cut(s) 9, 115
HpyAV CCTTC 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 86
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 3 cut(s) 31, 67, 78
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 53
MnlI CCTC 2 cut(s) 27, 111
NlaIV GGNNCC 2 cut(s) 38, 99
PaqCI CACCTGC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 38, 99
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SatI GCNGC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 53
SetI ASST 3 cut(s) 20, 42, 136
SgeI CNNG 6 cut(s) 22, 30, 66, 77, 92, 130
SspMI CTAG 1 cut(s) 131
TatI WGTACW 1 cut(s) 6
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 14, 126
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.