Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0017823

Physical Location & Seq

Genomic Coordinates Reverse (-)

67242065 .. 67245601

Gene Structure 3537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG421500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCAGAAGATACATTGTGAAATTTGGCGCGTAGATGCTGGAATTCTAGCTGCAGTTAATCAACAGGGCAACAGTTGCAGCAGGTTGTTGAATCTGAGAATATCATGGAGGATCCTGCTGCAGAGCTGTCTTAACGGTTCATTTCAAAGTAGTGCAGTGAATGTTGTACAAGTACACCTGCCTTCATTTGTTGAGGAACCTATTGGAGAGACCCAGAAGCCGACCTATGCTTCTATATTACGCGTTGCTAAAGGACAACCTGCATCATCTGTGGCTCCTCAGCATTCAGTTTACGAGACTGCACTACTGGCTTCAGATTGGAATGAATTTTCACAGTCCATTGCATTGTCCAATGCAGTTGAAAGGCCTGTAGCAAAGACAGCAGGAAGTTTCCGCCGTAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

135

Amino Acids

14.89

Weight (kDa)

9.56

Isoelectric Point (pI)

66.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017823)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0260611 RchiOBHm_Chr6g0271701
rosa_laevigata	RLG00000031539
rosa_multiflora	Rmu_sc0009952.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018650 Rroxscaffold_2G00119930 Rroxscaffold_3G00248110
rosa_samantha	Rh2AG309200 Rh5AG281100 Rh5DG421500 Rh6CG076600 Rh6CG101100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	186
Acc36I	ACCTGC	3 cut(s)	72, 186, 268
AccII	CGCG	2 cut(s)	30, 243
AciI	CCGC	1 cut(s)	394
AclWI	GGATC	2 cut(s)	106, 119
AcsI	RAATTY	3 cut(s)	21, 42, 326
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	2 cut(s)	168, 174
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	91, 146, 362
AluBI	AGCT	2 cut(s)	50, 126
AluI	AGCT	2 cut(s)	50, 126
Alw26I	GTCTC	2 cut(s)	203, 290
AlwI	GGATC	2 cut(s)	106, 119
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	3 cut(s)	50, 78, 118
ApoI	RAATTY	3 cut(s)	21, 42, 326
AspLEI	GCGC	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	37, 90, 105
BceAI	ACGGC	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	203, 290
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	3 cut(s)	51, 119, 369
BfuAI	ACCTGC	3 cut(s)	72, 186, 268
BisI	GCNGC	3 cut(s)	51, 79, 119
BlsI	GCNGC	3 cut(s)	52, 80, 120
BmiI	GGNNCC	3 cut(s)	113, 198, 276
BmsI	GCATC	2 cut(s)	25, 272
Bpu10I	CCTNAGC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	339
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	86, 293
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	37, 90, 105
BsgI	GTGCAG	2 cut(s)	174, 285
Bsh1236I	CGCG	2 cut(s)	30, 243
BshFI	GGCC	1 cut(s)	367
BsmAI	GTCTC	2 cut(s)	203, 290
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	367
Bso31I	GGTCTC	1 cut(s)	203
Bsp1407I	TGTACA	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	394
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	2 cut(s)	87, 292
BspFNI	CGCG	2 cut(s)	30, 243
BspLI	GGNNCC	3 cut(s)	113, 198, 276
BspMAI	CTGCAG	2 cut(s)	55, 123
BspMI	ACCTGC	3 cut(s)	72, 186, 268
BspPI	GGATC	2 cut(s)	106, 119
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	339
BsrGI	TGTACA	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	111
Bst4CI	ACNGT	3 cut(s)	74, 137, 336
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	95, 279
BstFNI	CGCG	2 cut(s)	30, 243
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	203, 290
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 308, 380
BstSFI	CTRYAG	3 cut(s)	51, 119, 369
BstUI	CGCG	2 cut(s)	30, 243
BstV1I	GCAGC	3 cut(s)	37, 90, 105
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BveI	ACCTGC	3 cut(s)	72, 186, 268
CfoI	GCGC	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	167, 173
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	6 cut(s)	50, 126, 220, 275, 311, 367
CviKI_1	RGCY	6 cut(s)	50, 126, 220, 275, 311, 367
CviQI	GTAC	2 cut(s)	167, 173
DdeI	CTNAG	2 cut(s)	95, 279
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	383
Eco147I	AGGCCT	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	108
FaiI	YATR	3 cut(s)	106, 228, 236
FatI	CATG	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	51, 79, 119
Fsp4HI	GCNGC	3 cut(s)	51, 79, 119
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	3 cut(s)	51, 79, 119
HaeIII	GGCC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	175, 292
Hpy188I	TCNGA	2 cut(s)	96, 316
Hpy8I	GTNNAC	2 cut(s)	175, 292
HpyAV	CCTTC	2 cut(s)	192, 396
HpyCH4III	ACNGT	3 cut(s)	74, 137, 336
HpyCH4V	TGCA	9 cut(s)	4, 53, 78, 121, 155, 263, 302, 344, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 308, 380
HpyF3I	CTNAG	2 cut(s)	95, 279
Hsp92II	CATG	1 cut(s)	108
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	3 cut(s)	37, 90, 105
LweI	GCATC	2 cut(s)	25, 272
MaeI	CTAG	1 cut(s)	47
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	1 cut(s)	111
MluCI	AATT	3 cut(s)	21, 42, 326
MluI	ACGCGT	1 cut(s)	241
MnlI	CCTC	3 cut(s)	102, 187, 288
MseI	TTAA	2 cut(s)	57, 132
Mva1269I	GAATGC	1 cut(s)	283
MvnI	CGCG	2 cut(s)	30, 243
MwoI	GCNNNNNNNGC	3 cut(s)	75, 308, 380
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	3 cut(s)	113, 198, 276
PaqCI	CACCTGC	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	367
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	52, 80, 120
PspN4I	GGNNCC	3 cut(s)	113, 198, 276
PstI	CTGCAG	2 cut(s)	55, 123
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	2 cut(s)	168, 174
RsaNI	GTAC	2 cut(s)	167, 173
SaqAI	TTAA	2 cut(s)	57, 132
SatI	GCNGC	3 cut(s)	51, 79, 119
Sau3AI	GATC	1 cut(s)	111
SetI	ASST	8 cut(s)	52, 86, 128, 180, 202, 227, 262, 407
SfaNI	GCATC	2 cut(s)	25, 272
SfcI	CTRYAG	3 cut(s)	51, 119, 369
Sse9I	AATT	3 cut(s)	21, 42, 326
SseBI	AGGCCT	1 cut(s)	367
SsiI	CCGC	1 cut(s)	394
SspMI	CTAG	1 cut(s)	47
StuI	AGGCCT	1 cut(s)	367
TaaI	ACNGT	3 cut(s)	74, 137, 336
TasI	AATT	3 cut(s)	21, 42, 326
TatI	WGTACW	2 cut(s)	166, 172
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	57, 132
Tru9I	TTAA	2 cut(s)	57, 132
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	3 cut(s)	50, 78, 118
TspDTI	ATGAA	3 cut(s)	129, 174, 339
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	3 cut(s)	21, 42, 326
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.