Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017823

Physical Location & Seq

Genomic Coordinates Reverse (-)

8082257 .. 8082565

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG076600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAAGAGAAGGGGAATTAAGCCTGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAACGAGGTGATATGAATGATGCCTTCAAAGTTCGAGACGAGATGTTGGGTATAGGTTTCAATCCTACACTTCTAACGTACAATGCTCTTATAAAAGGTCTATGCAAAAACCAAGAAGGTGATCTTGCTCAAGAGCTCCTTAAAGAAATGGTGAGCAGAGGGATTATTCCCGATGACAGCACATATTACTCTCTGATTGAGGGAATTGAGAATGTTGAGGAATTTCTCAGAAAGGGCGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

102

Amino Acids

11.55

Weight (kDa)

5.38

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	1 - 54	1.9e-12	Pentatricopeptide repeat domain
PPR_long	PF17177	1 - 88	1e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	4 - 36	4.3e-11	PPR repeat
PPR_2	PF13041	8 - 57	9.3e-17	PPR repeat family
PPR	PF01535	11 - 41	5.7e-08	PPR repeat
PPR_1	PF12854	40 - 72	1.8e-09	PPR repeat
PPR_2	PF13041	43 - 89	6.1e-14	PPR repeat family
PPR	PF01535	47 - 76	2.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017823)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0260611 RchiOBHm_Chr6g0271701
rosa_laevigata	RLG00000031539
rosa_multiflora	Rmu_sc0009952.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018650 Rroxscaffold_2G00119930 Rroxscaffold_3G00248110
rosa_samantha	Rh2AG309200 Rh5AG281100 Rh5DG421500 Rh6CG076600 Rh6CG101100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	155
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	91, 124
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	284
AsuHPI	GGTGA	3 cut(s)	83, 194, 226
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	93
BmsI	GCATC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	93
BsmBI	CGTCTC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	305
BssMI	GATC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	290
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	184
CciI	TCATGA	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	1 cut(s)	306
CviJI	RGCY	2 cut(s)	22, 199
CviKI_1	RGCY	2 cut(s)	22, 199
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	1 cut(s)	309
FaiI	YATR	7 cut(s)	60, 77, 116, 155, 166, 247, 307
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 186, 218
FatI	CATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	309
HinfI	GANTC	1 cut(s)	302
HphI	GGTGA	3 cut(s)	83, 194, 226
Hpy166II	GTNNAC	2 cut(s)	56, 65
Hpy188I	TCNGA	2 cut(s)	258, 293
Hpy188III	TCNNGA	4 cut(s)	98, 194, 233, 306
Hpy8I	GTNNAC	2 cut(s)	56, 65
HpyAV	CCTTC	3 cut(s)	3, 97, 173
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	1 cut(s)	36
LweI	GCATC	1 cut(s)	73
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	3 cut(s)	15, 267, 284
MnlI	CCTC	5 cut(s)	56, 62, 215, 256, 274
MseI	TTAA	2 cut(s)	18, 204
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	309
PagI	TCATGA	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	201
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	18, 204
Sau3AI	GATC	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	6 cut(s)	73, 121, 143, 163, 184, 201
SfaNI	GCATC	1 cut(s)	73
SgeI	CNNG	8 cut(s)	35, 80, 110, 115, 188, 200, 206, 245
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	3 cut(s)	15, 267, 284
SstI	GAGCTC	1 cut(s)	201
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	97
TasI	AATT	3 cut(s)	15, 267, 284
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	18, 204
Tru9I	TTAA	2 cut(s)	18, 204
TspDTI	ATGAA	3 cut(s)	17, 92, 294
XapI	RAATTY	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.