Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009952.1

Orthogroup ID

OG0017823

Physical Location & Seq

Genomic Coordinates Reverse (-)

26431 .. 26906

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009952.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgttgatggaaatggtccagttgacaactatggctatgcagggcaacagttgcagcaggttgttgaatctgagaatatcatggaggatcctgctgcagagctgtcttaacggttcatttcaaagtagtgcagtgaatgttgtacaagtacacctgccttcatttgttgaggaacctattggagagacccagaagccgacctatgcttctatattacgcgttgctaaaggacaacctgcatcatctgtggctcctcagcattcagtttacgagactgcactactggcttcagattggaatgaattttcacagtccattgcattgtccaatgcagttgaaaggcctgtagcaaagacagcaggaagtttccgccgtagaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

127

Amino Acids

14.02

Weight (kDa)

9.58

Isoelectric Point (pI)

68.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017823)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0260611 RchiOBHm_Chr6g0271701
rosa_laevigata	RLG00000031539
rosa_multiflora	Rmu_sc0009952.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018650 Rroxscaffold_2G00119930 Rroxscaffold_3G00248110
rosa_samantha	Rh2AG309200 Rh5AG281100 Rh5DG421500 Rh6CG076600 Rh6CG101100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	162
Acc36I	ACCTGC	3 cut(s)	48, 162, 244
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	2 cut(s)	82, 95
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	144, 150
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	67, 122, 338
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	179, 266
AlwI	GGATC	2 cut(s)	82, 95
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	54, 94
ApoI	RAATTY	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	66, 81
BceAI	ACGGC	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	179, 266
BfmI	CTRYAG	2 cut(s)	95, 345
BfuAI	ACCTGC	3 cut(s)	48, 162, 244
BisI	GCNGC	2 cut(s)	55, 95
BlsI	GCNGC	2 cut(s)	56, 96
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	3 cut(s)	89, 174, 252
BmsI	GCATC	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	19, 288
Bse3DI	GCAATG	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	62, 269
BseNI	ACTGG	2 cut(s)	19, 288
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	66, 81
BsgI	GTGCAG	2 cut(s)	150, 261
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	179, 266
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	2 cut(s)	63, 268
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	89, 174, 252
BspMAI	CTGCAG	1 cut(s)	99
BspMI	ACCTGC	3 cut(s)	48, 162, 244
BspPI	GGATC	2 cut(s)	82, 95
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	19, 288
BssMI	GATC	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	50, 113, 312
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	71, 255
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	2 cut(s)	179, 266
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 284, 356
BstSFI	CTRYAG	2 cut(s)	95, 345
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	66, 81
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
BveI	ACCTGC	3 cut(s)	48, 162, 244
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	143, 149
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	6 cut(s)	35, 102, 196, 251, 287, 343
CviKI_1	RGCY	6 cut(s)	35, 102, 196, 251, 287, 343
CviQI	GTAC	2 cut(s)	143, 149
DdeI	CTNAG	2 cut(s)	71, 255
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	359
Eco147I	AGGCCT	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	273
FaeI	CATG	1 cut(s)	84
FaiI	YATR	5 cut(s)	32, 38, 82, 204, 212
FatI	CATG	1 cut(s)	80
Fnu4HI	GCNGC	2 cut(s)	55, 95
Fsp4HI	GCNGC	2 cut(s)	55, 95
GluI	GCNGC	2 cut(s)	55, 95
HaeIII	GGCC	1 cut(s)	343
Hin1II	CATG	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	24, 151, 268
Hpy188I	TCNGA	2 cut(s)	72, 292
Hpy8I	GTNNAC	3 cut(s)	24, 151, 268
HpyAV	CCTTC	2 cut(s)	168, 372
HpyCH4III	ACNGT	3 cut(s)	50, 113, 312
HpyCH4V	TGCA	8 cut(s)	40, 54, 97, 131, 239, 278, 320, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 284, 356
HpyF3I	CTNAG	2 cut(s)	71, 255
Hsp92II	CATG	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	2 cut(s)	66, 81
LweI	GCATC	1 cut(s)	248
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	302
MluI	ACGCGT	1 cut(s)	217
MnlI	CCTC	3 cut(s)	78, 163, 264
MseI	TTAA	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	259
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	51, 284, 356
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	84
NlaIV	GGNNCC	3 cut(s)	89, 174, 252
PaqCI	CACCTGC	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	343
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	56, 96
PspN4I	GGNNCC	3 cut(s)	89, 174, 252
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	2 cut(s)	144, 150
RsaNI	GTAC	2 cut(s)	143, 149
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	55, 95
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	16
SetI	ASST	7 cut(s)	62, 104, 156, 178, 203, 238, 383
SfaNI	GCATC	1 cut(s)	248
SfcI	CTRYAG	2 cut(s)	95, 345
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	302
SseBI	AGGCCT	1 cut(s)	343
SsiI	CCGC	1 cut(s)	370
StuI	AGGCCT	1 cut(s)	343
TaaI	ACNGT	3 cut(s)	50, 113, 312
TasI	AATT	1 cut(s)	302
TatI	WGTACW	2 cut(s)	142, 148
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	138
TseI	GCWGC	2 cut(s)	54, 94
TspDTI	ATGAA	3 cut(s)	105, 150, 315
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.