Rroxscaffold_3G00248110

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
41411021 .. 41412014
994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248110.1

Sequence Viewer

Length: 249 bp
ATGGTTACCATCTTTTTGCTCTATTCATCGGAACTCGATCAAATGCAGAAATGCAAACACAGTTCTGGTCTTGAGCGCGTATGGGATCGTGGAGAGCAGTATTGTAACATCACTCATAGAGATTTGGTGCTTGATAGAATTGGATGGCATGGGAAAGACCGGTGGGCGGCCATAGCTGATCTCAATAGAGAAGACTTGACAAGAGTTGTCGGGGGGCGTTCAAAGAGACATCCCAGCTCTCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.58

Weight (kDa)

8.74

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 78
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 166
AgeI ACCGGT 1 cut(s) 159
AgsI TTSAA 1 cut(s) 222
AluBI AGCT 2 cut(s) 176, 237
AluI AGCT 2 cut(s) 176, 237
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 1 cut(s) 93
AoxI GGCC 1 cut(s) 168
AsiGI ACCGGT 1 cut(s) 159
AspLEI GCGC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 198
BccI CCATC 2 cut(s) 17, 138
BcoDI GTCTC 1 cut(s) 220
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 159
BseGI GGATG 2 cut(s) 149, 229
BseLI CCNNNNNNNGG 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 170
BshTI ACCGGT 1 cut(s) 159
BsiSI CCGG 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 220
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 37, 85, 178
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 170
BspFNI CGCG 1 cut(s) 78
BspPI GGATC 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 159
BssMI GATC 3 cut(s) 37, 85, 178
Bst4CI ACNGT 1 cut(s) 62
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 149, 229
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 3 cut(s) 40, 88, 181
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 3 cut(s) 37, 85, 178
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstPI GGTNACC 1 cut(s) 4
BstUI CGCG 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 149, 229
CfoI GCGC 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 159
CspAI ACCGGT 1 cut(s) 159
CviAII CATG 1 cut(s) 149
CviJI RGCY 3 cut(s) 170, 176, 237
CviKI_1 RGCY 3 cut(s) 170, 176, 237
DpnI GATC 3 cut(s) 39, 87, 180
DpnII GATC 3 cut(s) 37, 85, 178
EaeI YGGCCR 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
FaeI CATG 1 cut(s) 152
FaiI YATR 4 cut(s) 82, 117, 150, 173
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 2 cut(s) 156, 216
Fsp4HI GCNGC 1 cut(s) 168
GlaI GCGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 237
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 160
HhaI GCGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HpaII CCGG 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 46, 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 3 cut(s) 37, 85, 178
LpnPI CCDG 2 cut(s) 51, 173
MaeIII GTNAC 2 cut(s) 4, 104
MalI GATC 3 cut(s) 39, 87, 180
MboI GATC 3 cut(s) 37, 85, 178
MboII GAAGA 1 cut(s) 203
MluCI AATT 1 cut(s) 138
MspI CCGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 3 cut(s) 37, 85, 178
NlaIII CATG 1 cut(s) 152
PinAI ACCGGT 1 cut(s) 159
PkrI GCNGC 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 233
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 3 cut(s) 37, 85, 178
SetI ASST 2 cut(s) 178, 239
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 167
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 138
TauI GCSGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.