Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017823

Physical Location & Seq

Genomic Coordinates Reverse (-)

39325009 .. 39332311

Gene Structure 7303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG309200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTTCCTGATGCCATTTCGTATAATATCCTGATTAATGGCTCAGCTCAGGTGCTAAGTAGTTTAGCTTATTGTGATTTGGACTCGGAAATCAATCATCTATGGTACACTCATTTCGTGGCAAGAACCGGTTCATTTGAAAGTGCAATGAATGTTGTACAAGATCACCTGCCTTCATCTGTTGAGGAACATATTTTAGAGCCCCAGAAGCAGACCTATGCTTCAAAGTTATGCGTTGCTAAAGGACAACCTGCATTATCTGCAGCTCCTCAGCATTCAGTTGACAGGAGTGCACCACTGGCTTCAGATTGGAATGATCGTCCGATGCAGTTGAAAGGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

114

Amino Acids

12.52

Weight (kDa)

5.33

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017823)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0260611 RchiOBHm_Chr6g0271701
rosa_laevigata	RLG00000031539
rosa_multiflora	Rmu_sc0009952.1_g000009
rosa_roxburghii	Rroxscaffold_1G00018650 Rroxscaffold_2G00119930 Rroxscaffold_3G00248110
rosa_samantha	Rh2AG309200 Rh5AG281100 Rh5DG421500 Rh6CG076600 Rh6CG101100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	177
Acc36I	ACCTGC	2 cut(s)	177, 259
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	107, 159
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	140, 225, 334
AluBI	AGCT	3 cut(s)	47, 68, 266
AluI	AGCT	3 cut(s)	47, 68, 266
Alw21I	GWGCWC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	291
AoxI	GGCC	1 cut(s)	337
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	263
AseI	ATTAAT	1 cut(s)	36
AsiGI	ACCGGT	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	295
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	275
BfmI	CTRYAG	2 cut(s)	261, 341
BfuAI	ACCTGC	2 cut(s)	177, 259
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	315
Bpu10I	CCTNAGC	2 cut(s)	48, 270
Bpu1102I	GCTNAGC	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	57, 62, 284
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	339
BshTI	ACCGGT	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	204, 295
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	163, 316
Bsp1720I	GCTNAGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	3 cut(s)	56, 61, 283
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	265
BspMI	ACCTGC	2 cut(s)	177, 259
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	128
BssMI	GATC	2 cut(s)	163, 316
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	157
BstDEI	CTNAG	4 cut(s)	43, 48, 56, 270
BstKTI	GATC	2 cut(s)	166, 319
BstMBI	GATC	2 cut(s)	163, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 260, 299
BstSFI	CTRYAG	2 cut(s)	261, 341
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	296
BveI	ACCTGC	2 cut(s)	177, 259
Cfr10I	RCCGGY	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	106, 158
CspAI	ACCGGT	1 cut(s)	128
CviJI	RGCY	7 cut(s)	42, 47, 68, 202, 266, 302, 339
CviKI_1	RGCY	7 cut(s)	42, 47, 68, 202, 266, 302, 339
CviQI	GTAC	2 cut(s)	106, 158
DdeI	CTNAG	4 cut(s)	43, 48, 56, 270
DpnI	GATC	2 cut(s)	165, 318
DpnII	GATC	2 cut(s)	163, 316
Eco147I	AGGCCT	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	204
FaiI	YATR	5 cut(s)	24, 103, 192, 219, 232
Fnu4HI	GCNGC	1 cut(s)	264
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	3 cut(s)	108, 283, 293
Hpy188I	TCNGA	3 cut(s)	88, 307, 324
Hpy188III	TCNNGA	2 cut(s)	8, 31
Hpy8I	GTNNAC	3 cut(s)	108, 283, 293
HpyAV	CCTTC	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	146, 254, 263, 293, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 260, 299
HpyF3I	CTNAG	4 cut(s)	43, 48, 56, 270
Kzo9I	GATC	2 cut(s)	163, 316
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	9 cut(s)	21, 35, 44, 142, 182, 218, 264, 271, 284
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	315
MalI	GATC	2 cut(s)	165, 318
MboI	GATC	2 cut(s)	163, 316
MhlI	GDGCHC	2 cut(s)	204, 295
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	178, 279
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	1 cut(s)	36
MspI	CCGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	274
MwoI	GCNNNNNNNGC	3 cut(s)	208, 260, 299
NdeII	GATC	2 cut(s)	163, 316
NlaIV	GGNNCC	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	339
PctI	GAATGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	130
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PshBI	ATTAAT	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	265
RsaI	GTAC	2 cut(s)	107, 159
RsaNI	GTAC	2 cut(s)	106, 158
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	163, 316
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	204, 295
SetI	ASST	7 cut(s)	49, 54, 70, 171, 218, 253, 268
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	2 cut(s)	261, 341
SseBI	AGGCCT	1 cut(s)	339
StuI	AGGCCT	1 cut(s)	339
TatI	WGTACW	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	123, 164, 165
TspRI	CASTG	1 cut(s)	303
VneI	GTGCAC	1 cut(s)	291
VspI	ATTAAT	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.