Rroxscaffold_1G00018650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017823
Physical Location & Seq
Reverse (-)
22776642 .. 22777244
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018650.1

Sequence Viewer

Length: 297 bp
ATGCACGGCCTGTCCTCCACCTCGGTCGCGACCTTGTGGAGAATATCCGGAACGTTGGAATATGCTGGGCATGACTGGGGTTGTGGAGGGCGCCCTGCTCGCCGCCAGAGACTCCAATGCCGAGATAGAGCAGCCCTTGCCGGAGGCCTCTCCGATTCGGCGCTCAGTGTTCTCTTACCAGTAGTTGGCGCCCAAGTTAACAAGACTGCACCACTGGCTTCAGATTGGAATGACTTTTCACAGTCCATTGCATTGTCCAATGTAGTTGAATATGACTGTAGGAAGTTTCTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.55

Weight (kDa)

8.61

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 90, 188
AccB7I CCANNNNNTGG 1 cut(s) 185
AccII CGCG 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 1 cut(s) 103
AclI AACGTT 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 204
AcyI GRCGYC 2 cut(s) 91, 189
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 103
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 2 cut(s) 7, 145
ApeKI GCWGC 1 cut(s) 131
AspLEI GCGC 3 cut(s) 93, 163, 191
BanI GGYRCC 2 cut(s) 90, 188
BbvI GCAGC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 295
BfmI CTRYAG 1 cut(s) 277
BfoI RGCGCY 3 cut(s) 94, 164, 192
BisI GCNGC 2 cut(s) 103, 132
BlsI GCNGC 2 cut(s) 104, 133
BmiI GGNNCC 2 cut(s) 92, 190
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BsaHI GRCGYC 2 cut(s) 91, 189
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 3 cut(s) 80, 179, 219
Bse3DI GCAATG 1 cut(s) 246
BseAI TCCGGA 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 178
BseNI ACTGG 3 cut(s) 80, 179, 219
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 9, 147
BshNI GGYRCC 2 cut(s) 90, 188
BsiEI CGRYCG 1 cut(s) 27
BsiSI CCGG 2 cut(s) 48, 141
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 103
BsnI GGCC 2 cut(s) 9, 147
Bsp13I TCCGGA 1 cut(s) 47
Bsp68I TCGCGA 1 cut(s) 29
BspACI CCGC 1 cut(s) 103
BspANI GGCC 2 cut(s) 9, 147
BspCNI CTCAG 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 47
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 92, 190
BspT107I GGYRCC 2 cut(s) 90, 188
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 3 cut(s) 80, 179, 219
BssECI CCNNGG 1 cut(s) 21
BssNI GRCGYC 2 cut(s) 91, 189
Bst4CI ACNGT 2 cut(s) 243, 278
BstACI GRCGYC 2 cut(s) 91, 189
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 164
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 3 cut(s) 94, 164, 192
BstHHI GCGC 3 cut(s) 93, 163, 191
BstMAI GTCTC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 3 cut(s) 99, 137, 215
BstSFI CTRYAG 1 cut(s) 277
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 2 cut(s) 9, 147
BtsIMutI CAGTG 2 cut(s) 172, 212
BtuMI TCGCGA 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 3 cut(s) 93, 163, 191
CviAII CATG 1 cut(s) 71
CviJI RGCY 4 cut(s) 9, 134, 147, 218
CviKI_1 RGCY 4 cut(s) 9, 134, 147, 218
DdeI CTNAG 1 cut(s) 164
DinI GGCGCC 2 cut(s) 92, 190
Eco147I AGGCCT 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 204
EgeI GGCGCC 2 cut(s) 92, 190
EheI GGCGCC 2 cut(s) 92, 190
FaeI CATG 1 cut(s) 74
FaiI YATR 3 cut(s) 63, 72, 273
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 103, 132
Fsp4HI GCNGC 2 cut(s) 103, 132
FspBI CTAG 1 cut(s) 295
GlaI GCGC 3 cut(s) 92, 162, 190
GluI GCNGC 2 cut(s) 103, 132
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 3 cut(s) 94, 164, 192
HaeIII GGCC 2 cut(s) 9, 147
HapII CCGG 2 cut(s) 48, 141
HhaI GCGC 3 cut(s) 93, 163, 191
Hin1I GRCGYC 2 cut(s) 91, 189
Hin1II CATG 1 cut(s) 74
Hin6I GCGC 3 cut(s) 91, 161, 189
HinP1I GCGC 3 cut(s) 91, 161, 189
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 2 cut(s) 111, 155
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 2 cut(s) 48, 141
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 154, 223
Hpy188III TCNNGA 2 cut(s) 28, 48
Hpy8I GTNNAC 1 cut(s) 199
HpyCH4III ACNGT 2 cut(s) 243, 278
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 4, 209, 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 137, 215
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 2 cut(s) 91, 189
Hsp92II CATG 1 cut(s) 74
HspAI GCGC 3 cut(s) 91, 161, 189
KasI GGCGCC 2 cut(s) 90, 188
Kpn2I TCCGGA 1 cut(s) 47
KspAI GTTAAC 1 cut(s) 199
LpnPI CCDG 9 cut(s) 23, 51, 61, 61, 108, 119, 154, 192, 200
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 1 cut(s) 295
MaeII ACGT 1 cut(s) 53
MboII GAAGA 1 cut(s) 281
Mly113I GGCGCC 2 cut(s) 91, 189
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 5 cut(s) 25, 31, 80, 137, 158
MroI TCCGGA 1 cut(s) 47
MseI TTAA 1 cut(s) 198
MspI CCGG 2 cut(s) 48, 141
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 99, 137, 215
NarI GGCGCC 2 cut(s) 91, 189
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 2 cut(s) 92, 190
NmeAIII GCCGAG 1 cut(s) 146
NruI TCGCGA 1 cut(s) 29
PceI AGGCCT 1 cut(s) 147
PfeI GAWTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 185
PkrI GCNGC 2 cut(s) 104, 133
PleI GAGTC 1 cut(s) 105
PluTI GGCGCC 2 cut(s) 94, 192
PpsI GAGTC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 53
PspFI CCCAGC 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 92, 190
RruI TCGCGA 1 cut(s) 29
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 2 cut(s) 103, 132
SchI GAGTC 1 cut(s) 105
SetI ASST 3 cut(s) 23, 35, 56
SfcI CTRYAG 1 cut(s) 277
SfoI GGCGCC 2 cut(s) 92, 190
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 1 cut(s) 103
SspDI GGCGCC 2 cut(s) 90, 188
SspMI CTAG 1 cut(s) 295
StuI AGGCCT 1 cut(s) 147
TaaI ACNGT 2 cut(s) 243, 278
TaiI ACGT 1 cut(s) 56
TaqII GACCGA 1 cut(s) 13
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 2 cut(s) 172, 219
TseI GCWGC 1 cut(s) 131
TspRI CASTG 2 cut(s) 172, 219
Van91I CCANNNNNTGG 1 cut(s) 185
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.