Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014015

Physical Location & Seq

Genomic Coordinates Forward (+)

20069601 .. 20070224

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCGGGTTGCCAGCGAAATGGCTTTTTCCAATTCCGATCAAGAGGTTCTTGATGATCAAGTGACTTCCCTTGCTAATGATGGAGAAGAGAAATGGTGCGACTTTCAAAGGTCTGAACCTTTCTTTTTATATCAGCCGGTTGCAGCTAAAGGCTCTTCAACCTGTCGTAGACAGGGAAAATCTCTTTATAAGAATGACAAGTTTGACACCTTGATTTCTGTAGTGTCAGAGAAGAAGCAAACATCCAATGACATTAGCGAGAGCGTTGGACCAGAACTCTTTGATGACCTTTGCGCTGTGGAATTGACATTTGATGCTTGTCCCATGAAGCTTGAGTCGAAGGAATTGCGGGAATATAATATATTGAAGAGGCAATTCTTAGAATGGCAAAATAGGTTTGACTGGTATAAAGACTTTCCGCTCTCGGATTTAGATTATATGAGTCATTGTTTTTTTTTTTTTCCTTCCAGAATTATTTTGCCTTCTGATTTTCTTAGATTCATTATTCAAGATGAGCAGAAGAATTCCCCAAGTGGGGATGTTAACAATCCCGGAAGAGTTGAGGGTTCACTTGTACAGATAACAGGATACATCCAAAGGATGTTTGTTGCGTTTCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

24.06

Weight (kDa)

4.75

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18310
fragaria_vesca	FvH4_5g25850
malus_domestica	MD04G1026400.v1.1
prunus_persica	Prupe.2G050600_v2.0.a1
pyrus_communis	pycom04g02250
rosa_chinensis	RchiOBHm_Chr6g0264721 RchiOBHm_Chr6g0264731 RchiOBHm_Chr7g0216331
rosa_laevigata	RLG00000002581
rosa_multiflora	Rmu_sc0015060.1_g000019
rosa_roxburghii	Rroxscaffold_3G00243320
rosa_rugosa	Rorug07G0160000
rosa_samantha	Rh7AG297400 Rh7BG289700 Rh7CG317600 Rh7DG299800
rosa_wichuraiana	Rw7G025300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AccBSI	CCGCTC	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	169
AciI	CCGC	3 cut(s)	4, 349, 419
AcsI	RAATTY	1 cut(s)	523
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	2 cut(s)	534, 535
AgsI	TTSAA	5 cut(s)	107, 159, 367, 509, 617
AluBI	AGCT	2 cut(s)	146, 331
AluI	AGCT	2 cut(s)	146, 331
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	523
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciVI	GTATCC	1 cut(s)	581
BclI	TGATCA	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 535
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	407
BseGI	GGATG	4 cut(s)	242, 544, 591, 606
BseLI	CCNNNNNNNGG	2 cut(s)	534, 535
BseNI	ACTGG	1 cut(s)	407
BseXI	GCAGC	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	137, 552
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	534, 535
BsmFI	GGGAC	1 cut(s)	306
Bsp1407I	TGTACA	1 cut(s)	574
Bsp143I	GATC	2 cut(s)	37, 55
BspACI	CCGC	3 cut(s)	4, 349, 419
BspQI	GCTCTTC	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	136
BsrGI	TGTACA	1 cut(s)	574
BsrI	ACTGG	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	136
BssMI	GATC	2 cut(s)	37, 55
Bst6I	CTCTTC	4 cut(s)	81, 160, 362, 550
BstAUI	TGTACA	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	379, 494
BstF5I	GGATG	4 cut(s)	242, 544, 591, 606
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	40, 58
BstMBI	GATC	2 cut(s)	37, 55
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	19
BsuI	GTATCC	1 cut(s)	581
BtsCI	GGATG	4 cut(s)	242, 544, 591, 606
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	5 cut(s)	23, 136, 146, 153, 331
CviKI_1	RGCY	5 cut(s)	23, 136, 146, 153, 331
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	2 cut(s)	379, 494
DpnI	GATC	2 cut(s)	39, 57
DpnII	GATC	2 cut(s)	37, 55
Eam1104I	CTCTTC	4 cut(s)	81, 160, 362, 550
EarI	CTCTTC	4 cut(s)	81, 160, 362, 550
Eco47I	GGWCC	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	523
FaeI	CATG	1 cut(s)	328
FaiI	YATR	8 cut(s)	130, 189, 326, 357, 362, 408, 438, 440
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	1 cut(s)	324
FauI	CCCGC	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	4 cut(s)	229, 551, 578, 613
Fsp4HI	GCNGC	1 cut(s)	144
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	1 cut(s)	144
HapII	CCGG	2 cut(s)	137, 552
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	335, 442, 498
HpaI	GTTAAC	1 cut(s)	544
HpaII	CCGG	2 cut(s)	137, 552
Hpy166II	GTNNAC	3 cut(s)	170, 544, 569
Hpy188I	TCNGA	5 cut(s)	37, 115, 229, 427, 487
Hpy188III	TCNNGA	4 cut(s)	41, 50, 468, 509
Hpy8I	GTNNAC	3 cut(s)	170, 544, 569
HpyAV	CCTTC	3 cut(s)	334, 474, 492
HpyCH4V	TGCA	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	379, 494
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	1 cut(s)	294
Ksp22I	TGATCA	1 cut(s)	55
KspAI	GTTAAC	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	37, 55
LguI	GCTCTTC	1 cut(s)	160
LpnPI	CCDG	9 cut(s)	25, 150, 158, 175, 285, 388, 481, 565, 570
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	39, 57
MbiI	CCGCTC	1 cut(s)	421
MboI	GATC	2 cut(s)	37, 55
MboII	GAAGA	6 cut(s)	98, 147, 244, 379, 532, 567
MluCI	AATT	6 cut(s)	31, 302, 344, 374, 471, 523
MlyI	GAGTC	2 cut(s)	344, 451
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	3 cut(s)	37, 363, 556
MseI	TTAA	1 cut(s)	543
MspI	CCGG	2 cut(s)	137, 552
MspR9I	CCNGG	1 cut(s)	552
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	2 cut(s)	37, 55
NlaIII	CATG	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	498
PfoI	TCCNGGA	1 cut(s)	550
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	2 cut(s)	343, 450
PpsI	GAGTC	2 cut(s)	343, 450
PsiI	TTATAA	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	37, 55
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	2 cut(s)	344, 451
ScrFI	CCNGG	1 cut(s)	552
SetI	ASST	9 cut(s)	48, 113, 121, 148, 164, 212, 291, 333, 398
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	6 cut(s)	31, 302, 344, 374, 471, 523
SsiI	CCGC	3 cut(s)	4, 349, 419
StyD4I	CCNGG	1 cut(s)	550
TaqI	TCGA	1 cut(s)	338
TasI	AATT	6 cut(s)	31, 302, 344, 374, 471, 523
TatI	WGTACW	1 cut(s)	574
TfiI	GAWTC	1 cut(s)	498
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	341, 490
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	523
XmiI	GTMKAC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.