Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003514

Physical Location & Seq

Genomic Coordinates Reverse (-)

45538472 .. 45541140

Gene Structure 2669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTTTTCTGCAGTTTTCTTCTGTGGGAGCCATTTTGTTGTCACAGATTACAAAGAGGGATTTCATTATTCACAGAAGTTTTTATCATGGGGATTGGTTGATGCTATGCACAATGCAATATCTAAAAATTGCGAGGCTCAATGCAGACCTGAGGGAATTGAGGCATTACCTAAAGGAATTGTTTCCAAGACATCTGACTTTGTAATGCAACCACTATGGGGACCCCGAACTCAAAAGAAACCAAAGTCATCAACAAACTTATTGGCCATTGCAGTTGGAATCAAGCAAAAAGACTGTGTAAACAAAATTGTAAAGAAGTTTCTATCCAGCGATTTCGTCGTGATGCTATTTCATTATGATGGTAATGTAAATGACTGGAGGGATTTGGAATGGAGTGGTCGGGCCATACATGTATCTGCCATGAATCAAACCAAGTGGTGGTATGCAAAGCGATTCTTACACCCAGATATTGTTTCTGAGTATGCATTCATCTTCCTTTGGGATGAAGACCTTGGAATCGAAAACTTTAATGTTGGAAGATATCTATCAATTATTAGAAAAGAGGGGCTTGAAATTTCACAGCCAGGACTTGATCCTGACAACTCGGAGGTGCATCATGATTTTACAGCAAGAGACAAGAGATCAGAAATACATAGGTTTGTTGAAATGATGGCTCCTGTTTTTTCAAGAGCATCCTGGCGCTGTGTGTGGCATATGATTCAGAATGACTTGGTTCATGCATGGGGCTTGGATTTTCAGCTTGGTTATTGTGCAAAGGGTGATCGAACCCAAAATATCGGAATTGTTGATTCTGAGTACATTGTTCATTACGGTCTTCCTACACTAGGGGGTTCTGCAGCAAACAAAACAAATGCTGAAGAACAAGATCAAGCTGCTAAAAATATGTCTACTTCAAAACAACTGGCACCATCGAAGTCATCTCCATCTGACCCTAGAACTGAGGTGAGGAAGCTATCATTTGTTGAACTCGAAATTTTCAAAAGCAGATGGAAAAAGGCAATTAGAGAAGATAATTGTTGGGTTGATCCATACCAGAAGCCACCACAGCAGAGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

359

Amino Acids

41.21

Weight (kDa)

8.07

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	47 - 219	5e-84	Protein of unknown function (DUF707)
DUF707	PF05212	220 - 342	2.1e-43	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12840 AT4G12840 AT4G12840
fragaria_vesca	FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17510 FvH4_2g17530 FvH4_2g17530 FvH4_2g17530 FvH4_2g17530 FvH4_2g17530
malus_domestica	MD05G1154100.v1.1 MD10G1148400.v1.1
prunus_persica	Prupe.8G187400_v2.0.a1 Prupe.8G187400_v2.0.a1 Prupe.8G187400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0282241
rosa_laevigata	RLG00000012898
rosa_multiflora	Rmu_sc0014549.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186370
rosa_rugosa	Rorug02G0256100 Rorug03G0287100 Rorug03G0287200 Rorug06G0146600 Rorug07G0302200
rosa_samantha	Rh6AG259700 Rh6BG263000 Rh6CG261900 Rh6DG253900
rosa_wichuraiana	Rw6G022470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	925
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccI	GTMKAC	1 cut(s)	908
AclWI	GGATC	2 cut(s)	587, 1040
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	573, 993
AcuI	CTGAAG	1 cut(s)	897
AfaI	GTAC	1 cut(s)	818
AfiI	CCNNNNNNNGG	3 cut(s)	218, 438, 845
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	6 cut(s)	572, 665, 687, 915, 986, 1000
AjnI	CCWGG	2 cut(s)	583, 695
AluBI	AGCT	3 cut(s)	760, 893, 973
AluI	AGCT	3 cut(s)	760, 893, 973
Alw26I	GTCTC	1 cut(s)	627
AlwI	GGATC	2 cut(s)	587, 1040
AoxI	GGCC	2 cut(s)	264, 402
ApeKI	GCWGC	2 cut(s)	857, 893
ApoI	RAATTY	2 cut(s)	573, 993
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	702
AspS9I	GGNCC	2 cut(s)	221, 402
AsuHPI	GGTGA	2 cut(s)	791, 976
AvaII	GGWCC	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	925
BbsI	GAAGAC	2 cut(s)	513, 827
BbvI	GCAGC	2 cut(s)	869, 880
BccI	CCATC	5 cut(s)	353, 664, 937, 952, 1002
BciT130I	CCWGG	2 cut(s)	585, 697
BcoDI	GTCTC	1 cut(s)	627
BfaI	CTAG	2 cut(s)	845, 954
BfmI	CTRYAG	2 cut(s)	9, 855
BfoI	RGCGCY	1 cut(s)	703
BisI	GCNGC	2 cut(s)	858, 894
BlsI	GCNGC	2 cut(s)	859, 895
Bme1390I	CCNGG	2 cut(s)	585, 697
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	221, 402
BmiI	GGNNCC	5 cut(s)	29, 222, 223, 675, 927
BmrFI	CCNGG	2 cut(s)	585, 697
BmsI	GCATC	4 cut(s)	91, 333, 622, 701
BpiI	GAAGAC	2 cut(s)	513, 827
BpmI	CTGGAG	1 cut(s)	397
BsaBI	GATNNNNATC	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 438, 845
Bse1I	ACTGG	2 cut(s)	380, 927
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	544
BseBI	CCWGG	2 cut(s)	585, 697
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	2 cut(s)	508, 692
BseJI	GATNNNNATC	1 cut(s)	544
BseLI	CCNNNNNNNGG	3 cut(s)	218, 438, 845
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	4 cut(s)	141, 468, 804, 951
BseNI	ACTGG	2 cut(s)	380, 927
BseXI	GCAGC	2 cut(s)	869, 880
BshFI	GGCC	2 cut(s)	266, 404
BshNI	GGYRCC	1 cut(s)	925
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	3 cut(s)	218, 438, 845
BsmAI	GTCTC	1 cut(s)	627
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	266, 404
Bsp143I	GATC	5 cut(s)	592, 641, 781, 886, 1045
BspANI	GGCC	2 cut(s)	266, 404
BspCNI	CTCAG	4 cut(s)	142, 469, 805, 952
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	5 cut(s)	29, 222, 223, 675, 927
BspMAI	CTGCAG	2 cut(s)	13, 859
BspPI	GGATC	2 cut(s)	587, 1040
BspT107I	GGYRCC	1 cut(s)	925
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	380, 927
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	5 cut(s)	592, 641, 781, 886, 1045
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	2 cut(s)	585, 697
Bst4CI	ACNGT	2 cut(s)	296, 833
BstDEI	CTNAG	4 cut(s)	150, 477, 813, 960
BstENI	CCTNNNNNAGG	1 cut(s)	843
BstF5I	GGATG	2 cut(s)	508, 692
BstH2I	RGCGCY	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	702
BstKTI	GATC	5 cut(s)	595, 644, 784, 889, 1048
BstMAI	GTCTC	1 cut(s)	627
BstMBI	GATC	5 cut(s)	592, 641, 781, 886, 1045
BstMWI	GCNNNNNNNGC	1 cut(s)	1066
BstNI	CCWGG	2 cut(s)	585, 697
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	583, 695
BstSFI	CTRYAG	2 cut(s)	9, 855
BstV1I	GCAGC	2 cut(s)	869, 880
BstV2I	GAAGAC	2 cut(s)	513, 827
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	266, 404
BtsCI	GGATG	2 cut(s)	508, 692
CciI	TCATGA	1 cut(s)	616
CfoI	GCGC	1 cut(s)	702
Cfr13I	GGNCC	2 cut(s)	221, 402
Csp6I	GTAC	1 cut(s)	817
CspCI	CAANNNNNGTGG	2 cut(s)	416, 451
CviAII	CATG	6 cut(s)	87, 410, 421, 617, 737, 741
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	4 cut(s)	150, 477, 813, 960
DpnI	GATC	5 cut(s)	594, 643, 783, 888, 1047
DpnII	GATC	5 cut(s)	592, 641, 781, 886, 1045
EaeI	YGGCCR	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	897
Eco81I	CCTNAGG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	843
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	583, 695
EcoRV	GATATC	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	511
EcoT22I	ATGCAT	2 cut(s)	487, 742
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	6 cut(s)	90, 413, 424, 620, 740, 744
FalI	AAGNNNNNCTT	4 cut(s)	440, 472, 552, 584
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	6 cut(s)	86, 409, 420, 616, 736, 740
FauNDI	CATATG	1 cut(s)	714
FblI	GTMKAC	1 cut(s)	908
Fnu4HI	GCNGC	2 cut(s)	858, 894
FokI	GGATG	2 cut(s)	515, 679
Fsp4HI	GCNGC	2 cut(s)	858, 894
FspBI	CTAG	2 cut(s)	845, 954
GlaI	GCGC	1 cut(s)	701
GluI	GCNGC	2 cut(s)	858, 894
GsuI	CTGGAG	1 cut(s)	397
HaeII	RGCGCY	1 cut(s)	703
HaeIII	GGCC	2 cut(s)	266, 404
HhaI	GCGC	1 cut(s)	702
Hin1II	CATG	6 cut(s)	90, 413, 424, 620, 740, 744
Hin6I	GCGC	1 cut(s)	700
HinP1I	GCGC	1 cut(s)	700
HinfI	GANTC	6 cut(s)	279, 424, 453, 516, 718, 809
HphI	GGTGA	2 cut(s)	791, 976
Hpy166II	GTNNAC	2 cut(s)	301, 909
Hpy188I	TCNGA	8 cut(s)	196, 478, 607, 646, 723, 800, 814, 949
Hpy188III	TCNNGA	4 cut(s)	340, 596, 617, 687
Hpy8I	GTNNAC	2 cut(s)	301, 909
Hpy99I	CGWCG	1 cut(s)	341
HpyCH4III	ACNGT	2 cut(s)	296, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1066
HpyF3I	CTNAG	4 cut(s)	150, 477, 813, 960
Hsp92II	CATG	6 cut(s)	90, 413, 424, 620, 740, 744
HspAI	GCGC	1 cut(s)	700
KflI	GGGWCCC	1 cut(s)	221
Kzo9I	GATC	5 cut(s)	592, 641, 781, 886, 1045
LmnI	GCTCC	2 cut(s)	27, 679
Lsp1109I	GCAGC	2 cut(s)	869, 880
LweI	GCATC	4 cut(s)	91, 333, 622, 701
MaeI	CTAG	2 cut(s)	845, 954
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	5 cut(s)	594, 643, 783, 888, 1047
MboI	GATC	5 cut(s)	592, 641, 781, 886, 1045
MboII	GAAGA	7 cut(s)	10, 484, 518, 549, 827, 890, 1040
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	256, 514
MnlI	CCTC	9 cut(s)	49, 127, 145, 154, 372, 556, 601, 955, 960
Mox20I	TGGCCA	1 cut(s)	266
Mph1103I	ATGCAT	2 cut(s)	487, 742
MroXI	GAANNNNTTC	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	585, 697
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	585, 697
MwoI	GCNNNNNNNGC	1 cut(s)	1066
NdeI	CATATG	1 cut(s)	714
NdeII	GATC	5 cut(s)	592, 641, 781, 886, 1045
NlaIII	CATG	6 cut(s)	90, 413, 424, 620, 740, 744
NlaIV	GGNNCC	5 cut(s)	29, 222, 223, 675, 927
NmuCI	GTSAC	1 cut(s)	40
NsiI	ATGCAT	2 cut(s)	487, 742
NspI	RCATGY	1 cut(s)	413
PagI	TCATGA	1 cut(s)	616
PciI	ACATGT	1 cut(s)	409
PctI	GAATGC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	6 cut(s)	279, 424, 453, 516, 718, 809
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	859, 895
PpuMI	RGGWCCY	1 cut(s)	221
PscI	ACATGT	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	583, 695
PspGI	CCWGG	2 cut(s)	583, 695
PspN4I	GGNNCC	5 cut(s)	29, 222, 223, 675, 927
PspPI	GGNCC	2 cut(s)	221, 402
PspPPI	RGGWCCY	1 cut(s)	221
PstI	CTGCAG	2 cut(s)	13, 859
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	2 cut(s)	858, 894
Sau3AI	GATC	5 cut(s)	592, 641, 781, 886, 1045
Sau96I	GGNCC	2 cut(s)	221, 402
ScrFI	CCNGG	2 cut(s)	585, 697
SetI	ASST	9 cut(s)	151, 172, 513, 612, 659, 762, 895, 966, 975
SfaNI	GCATC	4 cut(s)	91, 333, 622, 701
SfcI	CTRYAG	2 cut(s)	9, 855
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	357
SspMI	CTAG	2 cut(s)	845, 954
StyD4I	CCNGG	2 cut(s)	583, 695
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	2 cut(s)	296, 833
TaqI	TCGA	4 cut(s)	519, 784, 932, 990
TatI	WGTACW	1 cut(s)	816
TfiI	GAWTC	6 cut(s)	279, 424, 453, 516, 718, 809
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	857, 893
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	7 cut(s)	53, 341, 437, 478, 519, 725, 815
Van91I	CCANNNNNTGG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	843
XapI	RAATTY	2 cut(s)	573, 993
XceI	RCATGY	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	908
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	2 cut(s)	845, 954
Zsp2I	ATGCAT	2 cut(s)	487, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.