RchiOBHm_Chr6g0289981

phospholipase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
53072759 .. 53074106
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1155 bp
ATGACTGACTTTTCCAAAAACTGGGAAAAACTGTCTGGTGACAATCTCTGGAGTGATCTAAAAGATCCTCTCCACGTCGATCTCCGCCGCTATATCATTCATTACGGTGAAAGGGCTGGAGCTATTGACGATGTCTTCATTGATGGCAAGCTCGTTTCCCCGATAAATCCCAAGTCCATCGGATATCCTAGATATGCAAGGAAAGATTTATTCGATAAAGTGGGATTGGTGAAAGGCAATTATCGACCCACGTACATAGTGGAGAAATATGTGTATGGAGCACCAAAACTGCGATCTCGCCCATCCTACCTGTTGGCTTACGTTGCGGTGTCAGACAATGAAGGAACTAAAGCCTTGGGGAGGAGGGACATTCTGATTGCCTGGAGAGGAACCAAGTTGGCGGCTGAAGTTGCTGTCGACAAAAACACCGAACTACGCCCGGCTCCTAAAATTGTTGGAAACCAGTATGCTGGCGCTATGGTGCACGGTGGTTGGTATGATTATTACACTCATGCTGACGTTAGGACCCCCAAGAACCAACGTACTAGTTGCCAAGATCAGGTTGGAGAGGCCGTTAGAAAACTGATAGATCAATACGGTAACGAGGGTCAAGAACTCAGCATTACTATAACTGGCCGCGGCACTGGTGCTGCATTTGCAATTTTAAATGGGATGGATATTGTTTGCAACAAACTCAATTATCCTACAAAACAACCCAAGAACCCATGTCTGGTCACGGCGATTGTCTTTGGCTGTCCCTTTGTTGGAAACGAAGCCTTTAAGAATGCGGAGAACGATGAGTCCATGTTTCAGATCTTGCGGGTCACAAATGAACCAGATCCAGTGACTAATCCGGAGCCTTCTCCGGAATATGAACATATTGGAGTAGAGGTGAAAATTAACACAGTCAATTCGCCCTACTTGAAGAATCCAATAGATACCGTACATGAGTTGGAGGTTTACTTGCATGGGGTTGCAGCGCACCCAGGGACAACTGTGGCATTGGAAGATATCCGCCGTACAGTGATGGTGAACAAAACATTGGACGGTCTTAAGGATGAAACTATAGTCCCCCCCATCTGGATCTTAAATAAGTTCATGGTTCAAAATGAGAGAGGCGCCTGGGAGCTGAAGGATGTTCCCGTTGATGATTAG

Protein Analysis

384

Amino Acids

43.04

Weight (kDa)

6.12

Isoelectric Point (pI)

25.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 126 - 284 1.4e-21 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016264)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1118
AccB7I CCANNNNNTGG 1 cut(s) 21
AccI GTMKAC 1 cut(s) 417
AccII CGCG 1 cut(s) 639
AccIII TCCGGA 2 cut(s) 853, 865
AciI CCGC 9 cut(s) 85, 88, 326, 401, 637, 639, 788, 820, 1015
AclWI GGATC 3 cut(s) 59, 833, 1091
AcoI YGGCCR 1 cut(s) 634
AcuI CTGAAG 2 cut(s) 426, 1151
AcyI GRCGYC 1 cut(s) 1119
AfaI GTAC 4 cut(s) 254, 544, 945, 1021
AfiI CCNNNNNNNGG 6 cut(s) 21, 360, 559, 730, 764, 1080
AflII CTTAAG 1 cut(s) 1052
AgsI TTSAA 2 cut(s) 925, 1106
AhlI ACTAGT 1 cut(s) 545
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 3 cut(s) 380, 985, 1121
AjuI GAANNNNNNNTTGG 2 cut(s) 1025, 1057
AloI GAACNNNNNNTCC 2 cut(s) 785, 817
AluBI AGCT 3 cut(s) 122, 151, 1129
AluI AGCT 3 cut(s) 122, 151, 1129
Alw21I GWGCWC 2 cut(s) 283, 486
Alw44I GTGCAC 1 cut(s) 482
AlwI GGATC 3 cut(s) 59, 833, 1091
Aor13HI TCCGGA 2 cut(s) 853, 865
AoxI GGCC 2 cut(s) 570, 634
ApaLI GTGCAC 1 cut(s) 482
ApeKI GCWGC 2 cut(s) 650, 977
AspLEI GCGC 3 cut(s) 476, 982, 1121
AspS9I GGNCC 1 cut(s) 525
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 5 cut(s) 50, 119, 241, 904, 1042
AvaII GGWCC 1 cut(s) 525
BaeGI GKGCMC 1 cut(s) 486
BanI GGYRCC 1 cut(s) 1118
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 2 cut(s) 283, 486
BbvI GCAGC 2 cut(s) 637, 989
BccI CCATC 6 cut(s) 137, 185, 310, 667, 1021, 1085
BceAI ACGGC 3 cut(s) 557, 753, 1002
BciT130I CCWGG 3 cut(s) 382, 987, 1123
BcnI CCSGG 1 cut(s) 440
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 2 cut(s) 189, 546
BfmI CTRYAG 1 cut(s) 1065
BfoI RGCGCY 2 cut(s) 477, 1122
BfrI CTTAAG 1 cut(s) 1052
BglII AGATCT 1 cut(s) 813
BisI GCNGC 6 cut(s) 88, 402, 637, 640, 651, 978
BlsI GCNGC 6 cut(s) 89, 403, 638, 641, 652, 979
Bme1390I CCNGG 4 cut(s) 382, 440, 987, 1123
Bme18I GGWCC 1 cut(s) 525
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 525
BmiI GGNNCC 5 cut(s) 391, 444, 527, 858, 1120
BmrFI CCNGG 4 cut(s) 382, 440, 987, 1123
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 3 cut(s) 70, 138, 403
BpuMI CCSGG 1 cut(s) 440
BsaAI YACGTR 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 1119
BsaJI CCNNGG 5 cut(s) 354, 637, 985, 986, 1122
BsaWI WCCGGW 2 cut(s) 853, 865
BsaXI ACNNNNNCTCC 4 cut(s) 558, 588, 876, 906
Bsc4I CCNNNNNNNGG 6 cut(s) 21, 360, 559, 730, 764, 1080
Bse1I ACTGG 5 cut(s) 26, 463, 637, 649, 842
BseAI TCCGGA 2 cut(s) 853, 865
BseBI CCWGG 3 cut(s) 382, 987, 1123
BseDI CCNNGG 5 cut(s) 354, 637, 985, 986, 1122
BseGI GGATG 4 cut(s) 302, 678, 1063, 1141
BseLI CCNNNNNNNGG 6 cut(s) 21, 360, 559, 730, 764, 1080
BseMII CTCAG 1 cut(s) 631
BseNI ACTGG 5 cut(s) 26, 463, 637, 649, 842
BseRI GAGGAG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 2 cut(s) 637, 989
Bsh1236I CGCG 1 cut(s) 639
BshFI GGCC 2 cut(s) 572, 636
BshNI GGYRCC 1 cut(s) 1118
BsiHKAI GWGCWC 2 cut(s) 283, 486
BsiSI CCGG 3 cut(s) 440, 854, 866
BslFI GGGAC 4 cut(s) 380, 741, 1003, 1055
BslI CCNNNNNNNGG 6 cut(s) 21, 360, 559, 730, 764, 1080
BsmFI GGGAC 4 cut(s) 380, 741, 1003, 1055
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 2 cut(s) 572, 636
Bsp1286I GDGCHC 2 cut(s) 283, 486
Bsp13I TCCGGA 2 cut(s) 853, 865
Bsp143I GATC 9 cut(s) 55, 64, 79, 293, 556, 589, 813, 838, 1083
BspACI CCGC 9 cut(s) 85, 88, 326, 401, 637, 639, 788, 820, 1015
BspANI GGCC 2 cut(s) 572, 636
BspCNI CTCAG 1 cut(s) 630
BspEI TCCGGA 2 cut(s) 853, 865
BspFNI CGCG 1 cut(s) 639
BspLI GGNNCC 5 cut(s) 391, 444, 527, 858, 1120
BspPI GGATC 3 cut(s) 59, 833, 1091
BspT107I GGYRCC 1 cut(s) 1118
BspTI CTTAAG 1 cut(s) 1052
BsrI ACTGG 5 cut(s) 26, 463, 637, 649, 842
BssECI CCNNGG 5 cut(s) 354, 637, 985, 986, 1122
BssMI GATC 9 cut(s) 55, 64, 79, 293, 556, 589, 813, 838, 1083
BssNI GRCGYC 1 cut(s) 1119
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 3 cut(s) 382, 987, 1123
Bst4CI ACNGT 9 cut(s) 33, 107, 488, 599, 907, 943, 997, 1024, 1049
BstACI GRCGYC 1 cut(s) 1119
BstAFI CTTAAG 1 cut(s) 1052
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 149, 472
BstDEI CTNAG 1 cut(s) 617
BstDSI CCRYGG 1 cut(s) 637
BstENI CCTNNNNNAGG 1 cut(s) 358
BstF5I GGATG 4 cut(s) 302, 678, 1063, 1141
BstFNI CGCG 1 cut(s) 639
BstH2I RGCGCY 2 cut(s) 477, 1122
BstHHI GCGC 3 cut(s) 476, 982, 1121
BstKTI GATC 9 cut(s) 58, 67, 82, 296, 559, 592, 816, 841, 1086
BstMBI GATC 9 cut(s) 55, 64, 79, 293, 556, 589, 813, 838, 1083
BstMWI GCNNNNNNNGC 3 cut(s) 323, 410, 656
BstNI CCWGG 3 cut(s) 382, 987, 1123
BstSCI CCNGG 4 cut(s) 380, 438, 985, 1121
BstSFI CTRYAG 1 cut(s) 1065
BstSLI GKGCMC 1 cut(s) 486
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 637, 989
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 4 cut(s) 64, 813, 838, 1083
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 4 cut(s) 64, 813, 838, 1083
BsuRI GGCC 2 cut(s) 572, 636
BtgI CCRYGG 1 cut(s) 637
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 4 cut(s) 302, 678, 1063, 1141
BtsIMutI CAGTG 3 cut(s) 642, 849, 1029
Cac8I GCNNGC 2 cut(s) 149, 472
CfoI GCGC 3 cut(s) 476, 982, 1121
Cfr13I GGNCC 1 cut(s) 525
Cfr42I CCGCGG 1 cut(s) 640
Csp6I GTAC 4 cut(s) 253, 543, 944, 1020
CviAII CATG 6 cut(s) 512, 726, 805, 947, 968, 1099
CviQI GTAC 4 cut(s) 253, 543, 944, 1020
DdeI CTNAG 1 cut(s) 617
DinI GGCGCC 1 cut(s) 1120
DpnI GATC 9 cut(s) 57, 66, 81, 295, 558, 591, 815, 840, 1085
DpnII GATC 9 cut(s) 55, 64, 79, 293, 556, 589, 813, 838, 1083
DraI TTTAAA 1 cut(s) 666
EaeI YGGCCR 1 cut(s) 634
EciI GGCGGA 2 cut(s) 74, 1004
Eco130I CCWWGG 1 cut(s) 354
Eco32I GATATC 2 cut(s) 185, 1012
Eco47I GGWCC 1 cut(s) 525
Eco57I CTGAAG 2 cut(s) 426, 1151
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoO109I RGGNCCY 1 cut(s) 525
EcoRII CCWGG 3 cut(s) 380, 985, 1121
EcoRV GATATC 2 cut(s) 185, 1012
EcoT14I CCWWGG 1 cut(s) 354
EgeI GGCGCC 1 cut(s) 1120
EheI GGCGCC 1 cut(s) 1120
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 6 cut(s) 515, 729, 808, 950, 971, 1102
FaqI GGGAC 4 cut(s) 380, 741, 1003, 1055
FatI CATG 6 cut(s) 511, 725, 804, 946, 967, 1098
FauI CCCGC 1 cut(s) 813
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 6 cut(s) 88, 402, 637, 640, 651, 978
FokI GGATG 4 cut(s) 289, 685, 1070, 1148
Fsp4HI GCNGC 6 cut(s) 88, 402, 637, 640, 651, 978
FspBI CTAG 2 cut(s) 189, 546
GlaI GCGC 3 cut(s) 475, 981, 1120
GluI GCNGC 6 cut(s) 88, 402, 637, 640, 651, 978
GsuI CTGGAG 3 cut(s) 70, 138, 403
HaeII RGCGCY 2 cut(s) 477, 1122
HaeIII GGCC 2 cut(s) 572, 636
HapII CCGG 3 cut(s) 440, 854, 866
HhaI GCGC 3 cut(s) 476, 982, 1121
Hin1I GRCGYC 1 cut(s) 1119
Hin1II CATG 6 cut(s) 515, 729, 808, 950, 971, 1102
Hin6I GCGC 3 cut(s) 474, 980, 1119
HinP1I GCGC 3 cut(s) 474, 980, 1119
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 2 cut(s) 800, 928
HpaII CCGG 3 cut(s) 440, 854, 866
HphI GGTGA 5 cut(s) 50, 119, 241, 904, 1042
Hpy166II GTNNAC 4 cut(s) 418, 484, 961, 1033
Hpy188I TCNGA 4 cut(s) 182, 334, 375, 813
Hpy188III TCNNGA 5 cut(s) 49, 611, 854, 866, 1081
Hpy8I GTNNAC 4 cut(s) 418, 484, 961, 1033
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 335, 870, 1126
HpyCH4III ACNGT 9 cut(s) 33, 107, 488, 599, 907, 943, 997, 1024, 1049
HpyCH4IV ACGT 5 cut(s) 75, 251, 321, 519, 541
HpyCH4V TGCA 7 cut(s) 197, 484, 653, 659, 687, 967, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 410, 656
HpyF3I CTNAG 1 cut(s) 617
HpySE526I ACGT 5 cut(s) 75, 251, 321, 519, 541
Hsp92I GRCGYC 1 cut(s) 1119
Hsp92II CATG 6 cut(s) 515, 729, 808, 950, 971, 1102
HspAI GCGC 3 cut(s) 474, 980, 1119
KasI GGCGCC 1 cut(s) 1118
Kpn2I TCCGGA 2 cut(s) 853, 865
KspI CCGCGG 1 cut(s) 640
Kzo9I GATC 9 cut(s) 55, 64, 79, 293, 556, 589, 813, 838, 1083
LmnI GCTCC 5 cut(s) 119, 278, 448, 856, 1126
Lsp1109I GCAGC 2 cut(s) 637, 989
MaeI CTAG 2 cut(s) 189, 546
MaeII ACGT 5 cut(s) 75, 251, 321, 519, 541
MaeIII GTNAC 5 cut(s) 38, 599, 733, 823, 844
MalI GATC 9 cut(s) 57, 66, 81, 295, 558, 591, 815, 840, 1085
MboI GATC 9 cut(s) 55, 64, 79, 293, 556, 589, 813, 838, 1083
MboII GAAGA 3 cut(s) 127, 937, 1019
MflI RGATCY 4 cut(s) 64, 813, 838, 1083
MhlI GDGCHC 2 cut(s) 283, 486
MluCI AATT 6 cut(s) 238, 450, 660, 697, 897, 910
Mly113I GGCGCC 1 cut(s) 1119
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 4 cut(s) 436, 544, 745, 933
MnlI CCTC 9 cut(s) 78, 354, 357, 380, 562, 598, 883, 949, 1109
MroI TCCGGA 2 cut(s) 853, 865
MseI TTAA 5 cut(s) 665, 780, 900, 1053, 1088
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 639
MspCI CTTAAG 1 cut(s) 1052
MspI CCGG 3 cut(s) 440, 854, 866
MspR9I CCNGG 4 cut(s) 382, 440, 987, 1123
Mva1269I GAATGC 1 cut(s) 790
MvaI CCWGG 3 cut(s) 382, 987, 1123
MvnI CGCG 1 cut(s) 639
MwoI GCNNNNNNNGC 3 cut(s) 323, 410, 656
NarI GGCGCC 1 cut(s) 1119
NciI CCSGG 1 cut(s) 440
NdeII GATC 9 cut(s) 55, 64, 79, 293, 556, 589, 813, 838, 1083
NlaIII CATG 6 cut(s) 515, 729, 808, 950, 971, 1102
NlaIV GGNNCC 5 cut(s) 391, 444, 527, 858, 1120
NmuCI GTSAC 4 cut(s) 38, 733, 823, 844
PasI CCCWGGG 1 cut(s) 986
PctI GAATGC 1 cut(s) 790
PfeI GAWTC 1 cut(s) 928
PflFI GACNNNGTC 1 cut(s) 131
PflMI CCANNNNNTGG 1 cut(s) 21
PkrI GCNGC 6 cut(s) 89, 403, 638, 641, 652, 979
PleI GAGTC 1 cut(s) 808
PluTI GGCGCC 1 cut(s) 1122
PpsI GAGTC 1 cut(s) 808
Ppu21I YACGTR 1 cut(s) 252
PpuMI RGGWCCY 1 cut(s) 525
Psp5II RGGWCCY 1 cut(s) 525
Psp6I CCWGG 3 cut(s) 380, 985, 1121
PspGI CCWGG 3 cut(s) 380, 985, 1121
PspN4I GGNNCC 5 cut(s) 391, 444, 527, 858, 1120
PspPI GGNCC 1 cut(s) 525
PspPPI RGGWCCY 1 cut(s) 525
PsuI RGATCY 4 cut(s) 64, 813, 838, 1083
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 4 cut(s) 254, 544, 945, 1021
RsaNI GTAC 4 cut(s) 253, 543, 944, 1020
RseI CAYNNNNRTG 1 cut(s) 105
SacII CCGCGG 1 cut(s) 640
SalI GTCGAC 1 cut(s) 416
SaqAI TTAA 5 cut(s) 665, 780, 900, 1053, 1088
SatI GCNGC 6 cut(s) 88, 402, 637, 640, 651, 978
Sau3AI GATC 9 cut(s) 55, 64, 79, 293, 556, 589, 813, 838, 1083
Sau96I GGNCC 1 cut(s) 525
SchI GAGTC 1 cut(s) 809
ScrFI CCNGG 4 cut(s) 382, 440, 987, 1123
SduI GDGCHC 2 cut(s) 283, 486
SfcI CTRYAG 1 cut(s) 1065
SfoI GGCGCC 1 cut(s) 1120
Sfr303I CCGCGG 1 cut(s) 640
SgrBI CCGCGG 1 cut(s) 640
SinI GGWCC 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 1052
SmoI CTYRAG 1 cut(s) 1052
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 6 cut(s) 238, 450, 660, 697, 897, 910
SsiI CCGC 9 cut(s) 85, 88, 326, 401, 637, 639, 788, 820, 1015
SspDI GGCGCC 1 cut(s) 1118
SspMI CTAG 2 cut(s) 189, 546
StyD4I CCNGG 4 cut(s) 380, 438, 985, 1121
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 9 cut(s) 33, 107, 488, 599, 907, 943, 997, 1024, 1049
TaiI ACGT 5 cut(s) 78, 254, 324, 522, 544
TaqI TCGA 4 cut(s) 78, 213, 244, 417
TasI AATT 6 cut(s) 238, 450, 660, 697, 897, 910
TauI GCSGC 4 cut(s) 90, 404, 639, 642
TfiI GAWTC 1 cut(s) 928
Tru1I TTAA 5 cut(s) 665, 780, 900, 1053, 1088
Tru9I TTAA 5 cut(s) 665, 780, 900, 1053, 1088
TscAI CASTG 3 cut(s) 649, 849, 1029
TseFI GTSAC 4 cut(s) 38, 733, 823, 844
TseI GCWGC 2 cut(s) 650, 977
Tsp45I GTSAC 4 cut(s) 38, 733, 823, 844
TspDTI ATGAA 7 cut(s) 89, 127, 354, 846, 888, 1074, 1087
TspRI CASTG 3 cut(s) 649, 849, 1029
Tth111I GACNNNGTC 1 cut(s) 131
Van91I CCANNNNNTGG 1 cut(s) 21
Vha464I CTTAAG 1 cut(s) 1052
VneI GTGCAC 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 525
XagI CCTNNNNNAGG 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 2 cut(s) 256, 560
XmiI GTMKAC 1 cut(s) 417
XspI CTAG 2 cut(s) 189, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.