RchiOBHm_Chr6g0291411

TVP38 TMEM64 family membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017506
Physical Location & Seq
Reverse (-)
54560118 .. 54563150
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 732 bp
ATGTGGTTTGAGCTTAATTCAGGAAGTCTGAAGGATTTCTTGTTATGGATTAAGCAGGATCTTGGACCTTGGGGTCCACTTGTTTTGGCTGTCGCATACGTTCCTCTCACGGTGCTGGCAGTTCCGGCTTCTGTACTTACCCTTGGTGGAGGTTATCTTTTTGGTTTGCCCGTGGGATTCATTGCAGACTCTATCGGTGCAACATTAGGTGCAACAGCAGCATTCATTCTTGGAAGAACAATTGGAAGATCGTATGTTATTTCCAAACTAAAGCATTATCCAAAGTTTCAAGCTGTTGCTGTTGCCATTCAGAGATCTGGTTTCAAGATAGTTCTTCTGCTGCGGCTTGCTCCTTTGCTTCCATTTAACATGCTGAACTACCTACTCTCTGTGACTCCTGTTCACATAGGGGACTATATGCTGGCAACTTGGTTGGGAATGATGCCCATCACATTTGCACTGGTATATGTTGGTACAACGCTTAAGGATCTTTCAGATGTTACACATGGATGGAATGAAGTTTCAACAACTCGTTGGGTGTTTATAGTACTTGGTTTTGGAATATCCGTGATTCTTCTGATTTGCATTAGTAAAGTTGCAAAGGCTGCTTTGGAAAAAGCACTGGCCGACAATGCTGAAATAGAAGGGATATTCTCATCTTCAACGCTGCCCATTGTAGCAGGTTCATCCCCAGATCTTCCAAAAACTCTCATCATACAGATAGACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

243

Amino Acids

26.13

Weight (kDa)

8.63

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 41 - 159 8.4e-25 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03260
fragaria_vesca FvH4_2g23830
malus_domestica MD03G1267800.v1.1
rosa_chinensis RchiOBHm_Chr6g0291411
rosa_laevigata RLG00000012116
rosa_multiflora Rmu_sc0003735.1_g000021
rosa_roxburghii Rroxscaffold_7G00176070
rosa_rugosa Rorug06G0219100
rosa_samantha Rh6AG331400 Rh6BG338300 Rh6CG344600
rosa_wichuraiana Rw6G028770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 72
Acc36I ACCTGC 1 cut(s) 671
AciI CCGC 1 cut(s) 343
AclWI GGATC 2 cut(s) 66, 495
AcoI YGGCCR 1 cut(s) 624
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 3 cut(s) 135, 475, 549
AflII CTTAAG 1 cut(s) 482
AgsI TTSAA 4 cut(s) 290, 325, 525, 663
AluBI AGCT 2 cut(s) 13, 293
AluI AGCT 2 cut(s) 13, 293
AlwI GGATC 2 cut(s) 66, 495
AoxI GGCC 1 cut(s) 624
ApeKI GCWGC 4 cut(s) 218, 340, 605, 667
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 65, 74
AvaII GGWCC 2 cut(s) 65, 74
BbvI GCAGC 4 cut(s) 230, 327, 592, 654
BccI CCATC 2 cut(s) 455, 504
BfrI CTTAAG 1 cut(s) 482
BfuAI ACCTGC 1 cut(s) 671
BglII AGATCT 2 cut(s) 314, 694
BisI GCNGC 5 cut(s) 219, 341, 344, 606, 668
BlsI GCNGC 5 cut(s) 220, 342, 345, 607, 669
BmcAI AGTACT 1 cut(s) 549
Bme18I GGWCC 2 cut(s) 65, 74
BmgT120I GGNCC 2 cut(s) 65, 74
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 68, 142, 171
Bse1I ACTGG 2 cut(s) 465, 627
Bse3DI GCAATG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 68, 142, 171
BseGI GGATG 2 cut(s) 515, 686
BseJI GATNNNNATC 1 cut(s) 446
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 465, 627
BseXI GCAGC 4 cut(s) 230, 327, 592, 654
BshFI GGCC 1 cut(s) 626
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 1 cut(s) 626
Bsp143I GATC 5 cut(s) 58, 248, 314, 487, 694
BspACI CCGC 1 cut(s) 343
BspANI GGCC 1 cut(s) 626
BspLI GGNNCC 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 671
BspPI GGATC 2 cut(s) 66, 495
BspTI CTTAAG 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 2 cut(s) 465, 627
BssECI CCNNGG 3 cut(s) 68, 142, 171
BssMI GATC 5 cut(s) 58, 248, 314, 487, 694
BssT1I CCWWGG 2 cut(s) 68, 142
Bst4CI ACNGT 1 cut(s) 112
BstAFI CTTAAG 1 cut(s) 482
BstAPI GCANNNNNTGC 1 cut(s) 605
BstC8I GCNNGC 3 cut(s) 117, 348, 423
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 515, 686
BstKTI GATC 5 cut(s) 61, 251, 317, 490, 697
BstMBI GATC 5 cut(s) 58, 248, 314, 487, 694
BstMWI GCNNNNNNNGC 4 cut(s) 125, 218, 605, 632
BstNSI RCATGY 1 cut(s) 373
BstV1I GCAGC 4 cut(s) 230, 327, 592, 654
BstX2I RGATCY 4 cut(s) 58, 314, 487, 694
BstYI RGATCY 4 cut(s) 58, 314, 487, 694
BsuRI GGCC 1 cut(s) 626
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 2 cut(s) 515, 686
BtsIMutI CAGTG 2 cut(s) 458, 620
BveI ACCTGC 1 cut(s) 671
Cac8I GCNNGC 3 cut(s) 117, 348, 423
Cfr13I GGNCC 2 cut(s) 65, 74
Csp6I GTAC 3 cut(s) 134, 474, 548
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 2 cut(s) 370, 506
CviJI RGCY 7 cut(s) 13, 89, 128, 293, 346, 605, 626
CviKI_1 RGCY 7 cut(s) 13, 89, 128, 293, 346, 605, 626
CviQI GTAC 3 cut(s) 134, 474, 548
DpnI GATC 5 cut(s) 60, 250, 316, 489, 696
DpnII GATC 5 cut(s) 58, 248, 314, 487, 694
DrdI GACNNNNNNGTC 1 cut(s) 72
DseDI GACNNNNNNGTC 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 624
Eco130I CCWWGG 2 cut(s) 68, 142
Eco47I GGWCC 2 cut(s) 65, 74
Eco57I CTGAAG 1 cut(s) 50
EcoT14I CCWWGG 2 cut(s) 68, 142
ErhI CCWWGG 2 cut(s) 68, 142
FaeI CATG 2 cut(s) 373, 509
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 425
FatI CATG 2 cut(s) 369, 505
Fnu4HI GCNGC 5 cut(s) 219, 341, 344, 606, 668
FokI GGATG 2 cut(s) 522, 673
Fsp4HI GCNGC 5 cut(s) 219, 341, 344, 606, 668
GluI GCNGC 5 cut(s) 219, 341, 344, 606, 668
HaeIII GGCC 1 cut(s) 626
HapII CCGG 1 cut(s) 125
Hin1II CATG 2 cut(s) 373, 509
HinfI GANTC 5 cut(s) 177, 188, 394, 571, 725
HpaII CCGG 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 77, 403
Hpy188I TCNGA 4 cut(s) 30, 312, 496, 579
Hpy188III TCNNGA 2 cut(s) 21, 325
Hpy8I GTNNAC 2 cut(s) 77, 403
HpyAV CCTTC 2 cut(s) 25, 638
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 6 cut(s) 185, 200, 212, 458, 585, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 218, 605, 632
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 2 cut(s) 373, 509
Kzo9I GATC 5 cut(s) 58, 248, 314, 487, 694
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 4 cut(s) 230, 327, 592, 654
LweI GCATC 1 cut(s) 432
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 391, 499
MalI GATC 5 cut(s) 60, 250, 316, 489, 696
MboI GATC 5 cut(s) 58, 248, 314, 487, 694
MboII GAAGA 6 cut(s) 246, 258, 326, 566, 651, 689
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 4 cut(s) 58, 314, 487, 694
MluCI AATT 2 cut(s) 16, 240
MlyI GAGTC 3 cut(s) 182, 388, 719
MnlI CCTC 2 cut(s) 114, 143
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 4 cut(s) 15, 51, 366, 483
MslI CAYNNNNRTG 1 cut(s) 508
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 125, 218, 605, 632
NdeII GATC 5 cut(s) 58, 248, 314, 487, 694
NlaIII CATG 2 cut(s) 373, 509
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 1 cut(s) 373
PctI GAATGC 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 2 cut(s) 177, 571
PkrI GCNGC 5 cut(s) 220, 342, 345, 607, 669
PleI GAGTC 3 cut(s) 182, 388, 719
PpsI GAGTC 3 cut(s) 182, 388, 719
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 65, 74
PsuI RGATCY 4 cut(s) 58, 314, 487, 694
RsaI GTAC 3 cut(s) 135, 475, 549
RsaNI GTAC 3 cut(s) 134, 474, 548
RseI CAYNNNNRTG 1 cut(s) 508
SaqAI TTAA 4 cut(s) 15, 51, 366, 483
SatI GCNGC 5 cut(s) 219, 341, 344, 606, 668
Sau3AI GATC 5 cut(s) 58, 248, 314, 487, 694
Sau96I GGNCC 2 cut(s) 65, 74
ScaI AGTACT 1 cut(s) 549
SchI GAGTC 3 cut(s) 182, 388, 719
SetI ASST 8 cut(s) 15, 70, 102, 154, 211, 295, 384, 685
SfaNI GCATC 1 cut(s) 432
SinI GGWCC 2 cut(s) 65, 74
SmiMI CAYNNNNRTG 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 2 cut(s) 16, 240
SsiI CCGC 1 cut(s) 343
StyI CCWWGG 2 cut(s) 68, 142
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 102
TasI AATT 2 cut(s) 16, 240
TatI WGTACW 2 cut(s) 133, 547
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 2 cut(s) 177, 571
Tru1I TTAA 4 cut(s) 15, 51, 366, 483
Tru9I TTAA 4 cut(s) 15, 51, 366, 483
TscAI CASTG 2 cut(s) 465, 627
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 4 cut(s) 218, 340, 605, 667
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 4 cut(s) 169, 214, 531, 675
TspGWI ACGGA 1 cut(s) 556
TspRI CASTG 2 cut(s) 465, 627
Vha464I CTTAAG 1 cut(s) 482
VpaK11BI GGWCC 2 cut(s) 65, 74
XceI RCATGY 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 35
ZrmI AGTACT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.