RchiOBHm_Chr6g0291951

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012104
Physical Location & Seq
Forward (+)
54991347 .. 54994141
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 987 bp
ATGAGAGGGTTGCAGCTCTCCTTGAACCAAACCCAGAAGGTTCGCCTTCAGAGAGCTCTGGAAAAGCTCGAGTCTCTGTCGTCAAAACCCAATTCCAATGCTTCTGTTATCGTCGCCGATTCCATCCCCGTTAACCACGAAGACGGACTTCTCAAGGGACATGGGACCTCTGAAGTTAACGGTGAAGTTGTTGCGACGGTTTGCGGCGTCGTCGAGAGGGTTAATAAGCTGGTCTATGTGCGTTCGTTAAGAGCTAGGTACAAACCAGAGGTTGGAGATATCATAGTAGGGCGTGTTATCGAGGTTGCTCCGAAACGTTGGAGAGTGGAGATAAACTATAGCCATGATGCAGTGTTGATGCTTTCTTCAATGAACTTACCCGATGGCATCCAGAGGCGTCGAACTGCTCTGGATGAGCTGAACATGCGCACTATTTTTGAAGAGAACGATGTCATTTGTGCTGAAGTTCGTGGTTTTCAACATGATGGTTTACATCTCCAAGCAAGAAGTCAGAAGTATGGGAAGCTTGGAAGGGGCCAAATGCTCACAGTCCCTCCTTATCTAGTGAAAAGACGCAAACAACACTTCCATAATTTGGAAAAGTACGGAATTGACCTTATTCTTGGCTGCAATGGATTCATTTGGGTTGGTGAGCATGTTGAAGTTACAGACGATATGGTAGTGGATCAAGTGAGCAATTCTGAACAACAGAGCGCCAAAGCTGATAAAAAAATTCTAAGCCCTGAAGAGCAAGAAAGAAGCTACACTCCCCAGGAGACGAGAGAGAACATCTGCAGGACTGCAAATGCTATTCGCGTATTGTCTACTTTAGGCTTCAATATTACGGTTGAAGTGATCATGGATACAGTGGAGTTGAGCATTTCTCTTAAACAACAGGTTCCCATACATGAAATGCTTGGTGCAGAGTTTTATGTTCTTGTTGCAGAAAAGGAGGCCGCAAGGAGAAGTTTGACTAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016078 GO:0016180 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051179 GO:0051641 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071031 GO:0071033 GO:0071034 GO:0071035 GO:0071038 GO:0071043 GO:0071046 GO:0071049 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

328

Amino Acids

37.04

Weight (kDa)

8.56

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1_RRP4 PF21266 86 - 157 1.1e-34 RRP4, S1 domain
KH_6 PF15985 179 - 220 2.3e-13 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 428
AccB7I CCANNNNNTGG 2 cut(s) 272, 595
AccI GTMKAC 1 cut(s) 824
AccII CGCG 1 cut(s) 816
AciI CCGC 2 cut(s) 204, 957
AclI AACGTT 1 cut(s) 316
AclWI GGATC 1 cut(s) 693
AcsI RAATTY 1 cut(s) 732
AcuI CTGAAG 4 cut(s) 32, 192, 483, 765
AcyI GRCGYC 2 cut(s) 207, 397
AfaI GTAC 2 cut(s) 260, 605
AfiI CCNNNNNNNGG 2 cut(s) 272, 595
AgsI TTSAA 7 cut(s) 25, 369, 440, 479, 662, 838, 851
AjnI CCWGG 1 cut(s) 771
AluBI AGCT 9 cut(s) 16, 56, 67, 229, 254, 418, 526, 722, 762
AluI AGCT 9 cut(s) 16, 56, 67, 229, 254, 418, 526, 722, 762
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 2 cut(s) 78, 770
AlwI GGATC 1 cut(s) 693
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 2 cut(s) 535, 954
ApeKI GCWGC 2 cut(s) 13, 627
ApoI RAATTY 1 cut(s) 732
AspLEI GCGC 2 cut(s) 429, 716
AspS9I GGNCC 2 cut(s) 165, 535
AsuHPI GGTGA 2 cut(s) 194, 662
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 25, 614
BccI CCATC 3 cut(s) 131, 377, 479
BciT130I CCWGG 1 cut(s) 773
BciVI GTATCC 1 cut(s) 856
BclI TGATCA 1 cut(s) 855
BcoDI GTCTC 2 cut(s) 78, 770
BfaI CTAG 2 cut(s) 255, 563
BfmI CTRYAG 2 cut(s) 337, 793
BfoI RGCGCY 1 cut(s) 717
BfuI GTATCC 1 cut(s) 856
BisI GCNGC 4 cut(s) 14, 205, 628, 957
BlsI GCNGC 4 cut(s) 15, 206, 629, 958
Bme1390I CCNGG 1 cut(s) 773
Bme18I GGWCC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 165, 535
BmiI GGNNCC 3 cut(s) 166, 536, 900
BmrFI CCNGG 1 cut(s) 773
BmsI GCATC 3 cut(s) 337, 348, 396
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 868, 900
BpuEI CTTGAG 1 cut(s) 137
BsaHI GRCGYC 2 cut(s) 207, 397
BsaJI CCNNGG 1 cut(s) 771
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 595
Bse3DI GCAATG 1 cut(s) 637
BseBI CCWGG 1 cut(s) 773
BseDI CCNNGG 1 cut(s) 771
BseGI GGATG 3 cut(s) 123, 387, 418
BseLI CCNNNNNNNGG 2 cut(s) 272, 595
BseMI GCAATG 1 cut(s) 637
BseXI GCAGC 2 cut(s) 25, 614
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 816
BshFI GGCC 2 cut(s) 537, 956
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 68
BslFI GGGAC 3 cut(s) 171, 178, 536
BslI CCNNNNNNNGG 2 cut(s) 272, 595
BsmAI GTCTC 2 cut(s) 78, 770
BsmBI CGTCTC 1 cut(s) 770
BsmFI GGGAC 3 cut(s) 171, 178, 536
BsnI GGCC 2 cut(s) 537, 956
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 685, 855
BspACI CCGC 2 cut(s) 204, 957
BspANI GGCC 2 cut(s) 537, 956
BspFNI CGCG 1 cut(s) 816
BspLI GGNNCC 3 cut(s) 166, 536, 900
BspMAI CTGCAG 1 cut(s) 797
BspPI GGATC 1 cut(s) 693
BspQI GCTCTTC 1 cut(s) 741
BsrDI GCAATG 1 cut(s) 637
BssECI CCNNGG 1 cut(s) 771
BssMI GATC 2 cut(s) 685, 855
BssNI GRCGYC 2 cut(s) 207, 397
Bst2UI CCWGG 1 cut(s) 773
Bst4CI ACNGT 5 cut(s) 182, 199, 550, 847, 868
Bst6I CTCTTC 2 cut(s) 435, 741
BstACI GRCGYC 2 cut(s) 207, 397
BstDEI CTNAG 1 cut(s) 737
BstF5I GGATG 3 cut(s) 123, 387, 418
BstFNI CGCG 1 cut(s) 816
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 2 cut(s) 429, 716
BstKTI GATC 2 cut(s) 688, 858
BstMAI GTCTC 2 cut(s) 78, 770
BstMBI GATC 2 cut(s) 685, 855
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstNI CCWGG 1 cut(s) 773
BstNSI RCATGY 2 cut(s) 427, 659
BstSCI CCNGG 1 cut(s) 771
BstSFI CTRYAG 2 cut(s) 337, 793
BstUI CGCG 1 cut(s) 816
BstV1I GCAGC 2 cut(s) 25, 614
BstV2I GAAGAC 1 cut(s) 147
BsuI GTATCC 1 cut(s) 856
BsuRI GGCC 2 cut(s) 537, 956
BtsCI GGATG 3 cut(s) 123, 387, 418
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 357, 873
CfoI GCGC 2 cut(s) 429, 716
Cfr13I GGNCC 2 cut(s) 165, 535
CseI GACGC 3 cut(s) 196, 386, 582
Csp6I GTAC 2 cut(s) 259, 604
CviAII CATG 7 cut(s) 161, 344, 424, 482, 656, 859, 908
CviQI GTAC 2 cut(s) 259, 604
DdeI CTNAG 1 cut(s) 737
DpnI GATC 2 cut(s) 687, 857
DpnII GATC 2 cut(s) 685, 855
Eam1104I CTCTTC 2 cut(s) 435, 741
EarI CTCTTC 2 cut(s) 435, 741
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 4 cut(s) 32, 192, 483, 765
Eco88I CYCGRG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 771
EcoRV GATATC 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 770
FaeI CATG 7 cut(s) 164, 347, 427, 485, 659, 862, 911
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 3 cut(s) 171, 178, 536
FatI CATG 7 cut(s) 160, 343, 423, 481, 655, 858, 907
FbaI TGATCA 1 cut(s) 855
FblI GTMKAC 1 cut(s) 824
Fnu4HI GCNGC 4 cut(s) 14, 205, 628, 957
FokI GGATG 3 cut(s) 110, 374, 425
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 4 cut(s) 14, 205, 628, 957
FspAI RTGCGCAY 1 cut(s) 428
FspBI CTAG 2 cut(s) 255, 563
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 2 cut(s) 428, 715
GluI GCNGC 4 cut(s) 14, 205, 628, 957
HaeII RGCGCY 1 cut(s) 717
HaeIII GGCC 2 cut(s) 537, 956
HgaI GACGC 3 cut(s) 196, 386, 582
HhaI GCGC 2 cut(s) 429, 716
Hin1I GRCGYC 2 cut(s) 207, 397
Hin1II CATG 7 cut(s) 164, 347, 427, 485, 659, 862, 911
Hin6I GCGC 2 cut(s) 427, 714
HinP1I GCGC 2 cut(s) 427, 714
HincII GTYRAC 2 cut(s) 133, 178
HindII GTYRAC 2 cut(s) 133, 178
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 3 cut(s) 71, 119, 636
HpaI GTTAAC 2 cut(s) 133, 178
HphI GGTGA 2 cut(s) 194, 662
Hpy166II GTNNAC 4 cut(s) 133, 178, 491, 825
Hpy188I TCNGA 5 cut(s) 51, 172, 312, 513, 703
Hpy188III TCNNGA 4 cut(s) 59, 214, 391, 410
Hpy8I GTNNAC 4 cut(s) 133, 178, 491, 825
Hpy99I CGWCG 5 cut(s) 116, 199, 212, 215, 402
HpyAV CCTTC 3 cut(s) 31, 56, 525
HpyCH4III ACNGT 5 cut(s) 182, 199, 550, 847, 868
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 7 cut(s) 13, 350, 630, 795, 803, 923, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpyF3I CTNAG 1 cut(s) 737
HpySE526I ACGT 1 cut(s) 316
Hsp92I GRCGYC 2 cut(s) 207, 397
Hsp92II CATG 7 cut(s) 164, 347, 427, 485, 659, 862, 911
HspAI GCGC 2 cut(s) 427, 714
Ksp22I TGATCA 1 cut(s) 855
KspAI GTTAAC 2 cut(s) 133, 178
Kzo9I GATC 2 cut(s) 685, 855
LguI GCTCTTC 1 cut(s) 741
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 2 cut(s) 25, 614
LweI GCATC 3 cut(s) 337, 348, 396
MaeI CTAG 2 cut(s) 255, 563
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 664
MalI GATC 2 cut(s) 687, 857
MboI GATC 2 cut(s) 685, 855
MboII GAAGA 4 cut(s) 152, 357, 452, 758
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 5 cut(s) 91, 592, 609, 697, 732
MlyI GAGTC 1 cut(s) 80
MmeI TCCRAC 2 cut(s) 253, 299
MnlI CCTC 7 cut(s) 178, 210, 262, 295, 387, 564, 946
MseI TTAA 5 cut(s) 132, 177, 222, 248, 888
MspR9I CCNGG 1 cut(s) 773
MvaI CCWGG 1 cut(s) 773
MvnI CGCG 1 cut(s) 816
MwoI GCNNNNNNNGC 1 cut(s) 424
NdeII GATC 2 cut(s) 685, 855
NlaIII CATG 7 cut(s) 164, 347, 427, 485, 659, 862, 911
NlaIV GGNNCC 3 cut(s) 166, 536, 900
NsbI TGCGCA 1 cut(s) 428
NspI RCATGY 2 cut(s) 427, 659
PaeR7I CTCGAG 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 741
PfeI GAWTC 2 cut(s) 119, 636
PflMI CCANNNNNTGG 2 cut(s) 272, 595
PkrI GCNGC 4 cut(s) 15, 206, 629, 958
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 58
Psp1406I AACGTT 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 771
PspGI CCWGG 1 cut(s) 771
PspN4I GGNNCC 3 cut(s) 166, 536, 900
PspPI GGNCC 2 cut(s) 165, 535
PspPPI RGGWCCY 1 cut(s) 165
PspXI VCTCGAGB 1 cut(s) 68
PstI CTGCAG 1 cut(s) 797
RsaI GTAC 2 cut(s) 260, 605
RsaNI GTAC 2 cut(s) 259, 604
SacI GAGCTC 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 741
SaqAI TTAA 5 cut(s) 132, 177, 222, 248, 888
SatI GCNGC 4 cut(s) 14, 205, 628, 957
Sau3AI GATC 2 cut(s) 685, 855
Sau96I GGNCC 2 cut(s) 165, 535
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 773
SduI GDGCHC 1 cut(s) 58
SfaNI GCATC 3 cut(s) 337, 348, 396
SfcI CTRYAG 2 cut(s) 337, 793
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 165
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 68, 152
SmoI CTYRAG 2 cut(s) 68, 152
Sse9I AATT 5 cut(s) 91, 592, 609, 697, 732
SsiI CCGC 2 cut(s) 204, 957
SspI AATATT 1 cut(s) 841
SspMI CTAG 2 cut(s) 255, 563
SstI GAGCTC 1 cut(s) 58
StyD4I CCNGG 1 cut(s) 771
TaaI ACNGT 5 cut(s) 182, 199, 550, 847, 868
TaiI ACGT 1 cut(s) 319
TaqI TCGA 4 cut(s) 69, 213, 300, 400
TasI AATT 5 cut(s) 91, 592, 609, 697, 732
TauI GCSGC 2 cut(s) 207, 959
TfiI GAWTC 2 cut(s) 119, 636
Tru1I TTAA 5 cut(s) 132, 177, 222, 248, 888
Tru9I TTAA 5 cut(s) 132, 177, 222, 248, 888
TscAI CASTG 2 cut(s) 357, 873
TseI GCWGC 2 cut(s) 13, 627
TspDTI ATGAA 3 cut(s) 386, 628, 924
TspGWI ACGGA 2 cut(s) 159, 621
TspRI CASTG 2 cut(s) 357, 873
Van91I CCANNNNNTGG 2 cut(s) 272, 595
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 1 cut(s) 732
XceI RCATGY 2 cut(s) 427, 659
XhoI CTCGAG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 824
XspI CTAG 2 cut(s) 255, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.