RchiOBHm_Chr6g0309651

A-kinase anchor protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010497
Physical Location & Seq
Forward (+)
67246000 .. 67248318
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1014 bp
ATGAGCACGCTGAAGTTGGATTCGATTTCTCCTACTGAAACTGTGGAGATAGAGAATGGTCTGTCACTGGTGCCGCGGCTCCGGCTGAATATAACGGTGTATCCGTCGAGCCAAGTTGTGAGCAAACCGATTGACGAGTGGAAGATGAAGCAAACCCTAATTGACTTCCTCAAGAACTCGCTTTCCGATCCGGTCACAGTTCCGGAGGAGGATCTCAAGATCAGACGGGTGAGGGACCTGAAGAAGCGGAAGCGGGACGACCCTGTAGCTTCCGGTACCATCTTCATTCGCGACCTAGGGTTTCTGAGGAAGACGAGCAGGAAGGGTGAGGAGGATGAGAAGAAGAGCGTTGAGGAGGTGGAGAAGAAGTTCAGTGATTGGAGGAGGTACATTGTGGAGAAGATGGATGGGATTGAGCTCAATCTCGAAGGGGTTAAGTTCAAGCTAAACGTCGTCGTTCCGGAGTCGGATGATTTCAAGGCGACGAAGAAAGGTTGGGAGGAGTTTTACGCTTTCGGAAATCGAGGGTTTTCGAGGAGTGGGAAGCAAGAGACTGATACTATAATACTGAAGGGTGTTCCTTCACGCTGGTTCGCAGAGCCGCGGGTTTCCTCAAAGCCTTCAATGCTGGTCACACATACCATCTTTTCGACATTTGGGAAGATAAGGAATCTTAATGTTGCTGAGGACGATGATCCAGGTAAGGATGCGAATGAGGATGATGGGGACTTGGTTTCAGGTCTCCATTGTAAGATTGTGGTTCAGTTCGAGAAACACAAGGACTTCTACAATACTTTCAAGGCGTTTTGTGGCCGCTCATTGCAGAAGGAAGGATCTAAGTTGAAGGCTGATTATGAGGTTGCTTGGGACAAGGATGGATTTTTCCGAAACTCGAGAAATCAAACACAGGAAGACAGTAGCAGGGCACGAGAAACCACAACATATCCCAGGCAGCAGCAACACTATTCTCGGTTCAGTTCCGATGAAGCTCCCAGAAAGAGGTTTAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

38.99

Weight (kDa)

8.89

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RBD_AKAP-17A PF25015 121 - 305 8.2e-33 AKAP-17A-like, RNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 70, 275
AccBSI CCGCTC 1 cut(s) 816
AccII CGCG 3 cut(s) 76, 291, 604
AccIII TCCGGA 2 cut(s) 202, 460
AciI CCGC 7 cut(s) 74, 76, 247, 253, 602, 604, 814
AclWI GGATC 4 cut(s) 182, 219, 689, 841
AcoI YGGCCR 1 cut(s) 811
AcuI CTGAAG 3 cut(s) 32, 260, 590
AfaI GTAC 2 cut(s) 277, 389
AfiI CCNNNNNNNGG 1 cut(s) 999
AgsI TTSAA 5 cut(s) 442, 478, 624, 799, 844
AjnI CCWGG 2 cut(s) 697, 947
AloI GAACNNNNNNTCC 4 cut(s) 167, 199, 353, 385
AluBI AGCT 4 cut(s) 269, 418, 445, 989
AluI AGCT 4 cut(s) 269, 418, 445, 989
Alw21I GWGCWC 2 cut(s) 8, 420
Alw26I GTCTC 2 cut(s) 545, 746
AlwI GGATC 4 cut(s) 182, 219, 689, 841
Ama87I CYCGRG 1 cut(s) 892
Aor13HI TCCGGA 2 cut(s) 202, 460
AoxI GGCC 1 cut(s) 811
ApeKI GCWGC 2 cut(s) 952, 955
Asp700I GAANNNNTTC 1 cut(s) 368
Asp718I GGTACC 1 cut(s) 275
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 241, 338
AvaI CYCGRG 1 cut(s) 892
AvaII GGWCC 1 cut(s) 235
AvrII CCTAGG 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 928
BanI GGYRCC 2 cut(s) 70, 275
BanII GRGCYC 1 cut(s) 420
BauI CACGAG 1 cut(s) 927
BbsI GAAGAC 2 cut(s) 317, 918
Bbv12I GWGCWC 2 cut(s) 8, 420
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 964, 967
BccI CCATC 6 cut(s) 287, 397, 401, 650, 716, 869
BciT130I CCWGG 2 cut(s) 699, 949
BciVI GTATCC 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 545, 746
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 264
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 6 cut(s) 74, 77, 602, 814, 953, 956
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 6 cut(s) 75, 78, 603, 815, 954, 957
Bme1390I CCNGG 2 cut(s) 699, 949
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 892
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 4 cut(s) 72, 80, 236, 277
BmrFI CCNGG 2 cut(s) 699, 949
BmsI GCATC 1 cut(s) 697
BpiI GAAGAC 2 cut(s) 317, 918
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 2 cut(s) 155, 200
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 4 cut(s) 74, 295, 602, 947
BsaWI WCCGGW 4 cut(s) 190, 202, 272, 460
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 999
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 818
BseAI TCCGGA 2 cut(s) 202, 460
BseBI CCWGG 2 cut(s) 699, 949
BseDI CCNNGG 4 cut(s) 74, 295, 602, 947
BseGI GGATG 6 cut(s) 340, 412, 475, 712, 724, 880
BseLI CCNNNNNNNGG 1 cut(s) 999
BseMI GCAATG 1 cut(s) 818
BseMII CTCAG 2 cut(s) 296, 675
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 6 cut(s) 221, 344, 368, 397, 515, 550
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 2 cut(s) 964, 967
Bsh1236I CGCG 3 cut(s) 76, 291, 604
BshFI GGCC 1 cut(s) 813
BshNI GGYRCC 2 cut(s) 70, 275
BsiHKAI GWGCWC 2 cut(s) 8, 420
BsiHKCI CYCGRG 1 cut(s) 892
BsiSI CCGG 5 cut(s) 82, 191, 203, 273, 461
BslFI GGGAC 4 cut(s) 248, 269, 740, 881
BslI CCNNNNNNNGG 1 cut(s) 999
BsmAI GTCTC 2 cut(s) 545, 746
BsmFI GGGAC 4 cut(s) 248, 269, 740, 881
BsnI GGCC 1 cut(s) 813
Bso31I GGTCTC 1 cut(s) 746
BsoBI CYCGRG 1 cut(s) 892
Bsp1286I GDGCHC 3 cut(s) 8, 420, 928
Bsp13I TCCGGA 2 cut(s) 202, 460
Bsp143I GATC 5 cut(s) 187, 211, 219, 694, 833
Bsp68I TCGCGA 1 cut(s) 291
BspACI CCGC 7 cut(s) 74, 76, 247, 253, 602, 604, 814
BspANI GGCC 1 cut(s) 813
BspCNI CTCAG 2 cut(s) 297, 676
BspEI TCCGGA 2 cut(s) 202, 460
BspFNI CGCG 3 cut(s) 76, 291, 604
BspLI GGNNCC 4 cut(s) 72, 80, 236, 277
BspPI GGATC 4 cut(s) 182, 219, 689, 841
BspQI GCTCTTC 1 cut(s) 338
BspT107I GGYRCC 2 cut(s) 70, 275
BspTNI GGTCTC 1 cut(s) 746
BsrBI CCGCTC 1 cut(s) 816
BsrDI GCAATG 1 cut(s) 818
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 4 cut(s) 74, 295, 602, 947
BssMI GATC 5 cut(s) 187, 211, 219, 694, 833
BssSI CACGAG 1 cut(s) 927
BssT1I CCWWGG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 927
Bst2UI CCWGG 2 cut(s) 699, 949
Bst4CI ACNGT 4 cut(s) 43, 97, 199, 917
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 305, 684, 837
BstDSI CCRYGG 2 cut(s) 74, 602
BstF5I GGATG 6 cut(s) 340, 412, 475, 712, 724, 880
BstFNI CGCG 3 cut(s) 76, 291, 604
BstKTI GATC 5 cut(s) 190, 214, 222, 697, 836
BstMAI GTCTC 2 cut(s) 545, 746
BstMBI GATC 5 cut(s) 187, 211, 219, 694, 833
BstMWI GCNNNNNNNGC 2 cut(s) 82, 625
BstNI CCWGG 2 cut(s) 699, 949
BstSCI CCNGG 2 cut(s) 697, 947
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 928
BstUI CGCG 3 cut(s) 76, 291, 604
BstV1I GCAGC 2 cut(s) 964, 967
BstV2I GAAGAC 2 cut(s) 317, 918
BstX2I RGATCY 2 cut(s) 211, 833
BstYI RGATCY 2 cut(s) 211, 833
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 813
BtgI CCRYGG 2 cut(s) 74, 602
BtsCI GGATG 6 cut(s) 340, 412, 475, 712, 724, 880
BtsIMutI CAGTG 2 cut(s) 65, 379
BtuMI TCGCGA 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 235
Cfr42I CCGCGG 2 cut(s) 77, 605
Csp6I GTAC 2 cut(s) 276, 388
CviQI GTAC 2 cut(s) 276, 388
DdeI CTNAG 3 cut(s) 305, 684, 837
DpnI GATC 5 cut(s) 189, 213, 221, 696, 835
DpnII GATC 5 cut(s) 187, 211, 219, 694, 833
EaeI YGGCCR 1 cut(s) 811
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 746
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 3 cut(s) 32, 260, 590
Eco88I CYCGRG 1 cut(s) 892
EcoICRI GAGCTC 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 697, 947
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 295
FaiI YATR 5 cut(s) 92, 563, 639, 855, 943
FaqI GGGAC 4 cut(s) 248, 269, 740, 881
FauI CCCGC 2 cut(s) 246, 597
Fnu4HI GCNGC 6 cut(s) 74, 77, 602, 814, 953, 956
FokI GGATG 6 cut(s) 347, 419, 482, 719, 731, 887
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 6 cut(s) 74, 77, 602, 814, 953, 956
FspBI CTAG 1 cut(s) 296
GluI GCNGC 6 cut(s) 74, 77, 602, 814, 953, 956
HaeIII GGCC 1 cut(s) 813
HapII CCGG 5 cut(s) 82, 191, 203, 273, 461
HinfI GANTC 3 cut(s) 20, 464, 670
HpaII CCGG 5 cut(s) 82, 191, 203, 273, 461
HphI GGTGA 2 cut(s) 241, 338
Hpy188I TCNGA 7 cut(s) 187, 224, 306, 469, 518, 887, 982
Hpy188III TCNNGA 8 cut(s) 172, 203, 217, 290, 425, 461, 769, 894
Hpy99I CGWCG 4 cut(s) 109, 455, 458, 487
HpyAV CCTTC 8 cut(s) 316, 422, 565, 591, 630, 820, 824, 838
HpyCH4III ACNGT 4 cut(s) 43, 97, 199, 917
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 1 cut(s) 823
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 625
HpyF3I CTNAG 3 cut(s) 305, 684, 837
HpySE526I ACGT 1 cut(s) 450
Kpn2I TCCGGA 2 cut(s) 202, 460
KpnI GGTACC 1 cut(s) 279
KspI CCGCGG 2 cut(s) 77, 605
Kzo9I GATC 5 cut(s) 187, 211, 219, 694, 833
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 2 cut(s) 84, 994
Lsp1109I GCAGC 2 cut(s) 964, 967
LweI GCATC 1 cut(s) 697
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 3 cut(s) 63, 193, 631
MalI GATC 5 cut(s) 189, 213, 221, 696, 835
MbiI CCGCTC 1 cut(s) 816
MboI GATC 5 cut(s) 187, 211, 219, 694, 833
MflI RGATCY 2 cut(s) 211, 833
MhlI GDGCHC 3 cut(s) 8, 420, 928
MluCI AATT 1 cut(s) 159
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 447
MroI TCCGGA 2 cut(s) 202, 460
MroXI GAANNNNTTC 1 cut(s) 368
MseI TTAA 3 cut(s) 435, 675, 1005
MspA1I CMGCKG 2 cut(s) 76, 604
MspI CCGG 5 cut(s) 82, 191, 203, 273, 461
MspR9I CCNGG 2 cut(s) 699, 949
MvaI CCWGG 2 cut(s) 699, 949
MvnI CGCG 3 cut(s) 76, 291, 604
MwoI GCNNNNNNNGC 2 cut(s) 82, 625
NdeII GATC 5 cut(s) 187, 211, 219, 694, 833
NlaIV GGNNCC 4 cut(s) 72, 80, 236, 277
NmuCI GTSAC 3 cut(s) 63, 193, 631
NruI TCGCGA 1 cut(s) 291
PaeR7I CTCGAG 1 cut(s) 892
PciSI GCTCTTC 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 20, 670
PkrI GCNGC 6 cut(s) 75, 78, 603, 815, 954, 957
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PpuMI RGGWCCY 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 697, 947
PspGI CCWGG 2 cut(s) 697, 947
PspN4I GGNNCC 4 cut(s) 72, 80, 236, 277
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 2 cut(s) 211, 833
RruI TCGCGA 1 cut(s) 291
RsaI GTAC 2 cut(s) 277, 389
RsaNI GTAC 2 cut(s) 276, 388
SacI GAGCTC 1 cut(s) 420
SacII CCGCGG 2 cut(s) 77, 605
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 3 cut(s) 435, 675, 1005
SatI GCNGC 6 cut(s) 74, 77, 602, 814, 953, 956
Sau3AI GATC 5 cut(s) 187, 211, 219, 694, 833
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 2 cut(s) 699, 949
SduI GDGCHC 3 cut(s) 8, 420, 928
SfaNI GCATC 1 cut(s) 697
SfcI CTRYAG 1 cut(s) 264
Sfr274I CTCGAG 1 cut(s) 892
Sfr303I CCGCGG 2 cut(s) 77, 605
SgrBI CCGCGG 2 cut(s) 77, 605
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 892
SmlI CTYRAG 3 cut(s) 170, 215, 892
SmoI CTYRAG 3 cut(s) 170, 215, 892
Sse9I AATT 1 cut(s) 159
SsiI CCGC 7 cut(s) 74, 76, 247, 253, 602, 604, 814
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 697, 947
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 4 cut(s) 43, 97, 199, 917
TaiI ACGT 1 cut(s) 453
TaqI TCGA 8 cut(s) 23, 107, 426, 523, 533, 650, 768, 893
TasI AATT 1 cut(s) 159
TauI GCSGC 4 cut(s) 76, 79, 604, 816
TfiI GAWTC 2 cut(s) 20, 670
Tru1I TTAA 3 cut(s) 435, 675, 1005
Tru9I TTAA 3 cut(s) 435, 675, 1005
TscAI CASTG 2 cut(s) 72, 379
TseFI GTSAC 3 cut(s) 63, 193, 631
TseI GCWGC 2 cut(s) 952, 955
Tsp45I GTSAC 3 cut(s) 63, 193, 631
TspDTI ATGAA 3 cut(s) 161, 274, 999
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 2 cut(s) 72, 379
VpaK11BI GGWCC 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 892
XmaJI CCTAGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.