RchiOBHm_Chr5g0000131

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016277
Physical Location & Seq
Reverse (-)
131122 .. 133219
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2052 bp
ATGGATGGGCCCGCCATATATTCACTTTTGTTGTTGGTGGTAGTAATCATCCTCATGTCATCCTTTGCTTTCCGTCCCCGTCTTTGGAAGCTTCCCGCCATAGTTCAAACCCTAAGACAGTTGAATGCTTCTGCTCAGGTGGAGCCAAACTTGAATTCGATTGAAGCCGGTCGTCGTCGTCGTCAAAAGCCAAACCTGAGTCTTTGGCGGTATAAAAGTGATACATATAGCTGTAACTGTGAGATTATAAATCTCGGGCGCTGTGGCAAAGTGAAAGATGCAAGGAAGCTGTTCGACGATATGCCTCAACGAGATTCTGTCTCTTATGCGTCCATGATCAATGTTTACTTGAAGAACGATGATCTTCCCAATGCACAGAAGCTCTTTCAGGCCATGCCCACCAGTAATATTGTTGCTGAATCTGCGATGGTTAGTGGTTATGTCAAGGCAGGCCGTATAGCTGAGGCTCGTCAAGTTTTTGATCGCATGGAAAACAGAAATGTGTATTCTTGGACCAGTTTGATATCCGGGTATCTCAGTTGCGGACAAGTTGACGAGGCCCGTCGGCTTTTTGGTCGTATGCCTGTCAAAAATGTGGTGTCCTGGACTACTATGATCCTGGGTTACGCTCGCAACAACTTGATTGATGAAGCGCGCCGTGTGTTTAACCTTATGCCTGAAAGGAACACAGTCTCATGGACAGTTATGATCAAGGCTCTTATTGAGAATGATCAATTTGATGACGCACTTAGCCTCTTCAATGATATGCCACAACGGAACCTATATTCTTGGAACATCATAATCTTGGGTCTTCTTAATGCAAATAGAGCAAGTGAAGCCATCAAACTCTTCAGTTCAATGCCTCAGAGGAATGCAATTTCTTGGACTACTATGGTTACGGGGTTGGCACATAACAAGATGACTAAACTTGCGAGAGAGTACTTTGATCGAATGCCTAACAAAGATGTAGCTGCCTGGAATGCTATGATTGCATCATATGTTGACGAAGGCCTCATGGCAGAAGCCGGTGAGCTATTCAGTTTCATGCACGAAAGGAATGTTGTTACTTGGAATCTGATGATTCATGGTTATACTAAACGTGGGCCAAAAGAACAAGCCTTAAAGCACCTAATTCTGATGCTTCGGTTTTGCTTTAGACCTAATAGGACTACCATCGCTAGCATATTGAGCTCATGCGAGGACATGACGGAGCTAATGCAAGCTCATGCACTGGTCCTCTCACATGGGTTTGAGCATGACACAGTCGTTGTGAATACACTAGTCTCTATGTATTCCAGAAATGGGGATGTTACTTCTGCTAGGTTTGTTTTTGATCATCTTGGGGCTAAGGATGTGGCATCATGGAATGCAATGATATTAGCATATTCAAATCATGGATATGGTCACCATGCATTGCAGGTCTTCGCACACATGTTAAGATCAGGAGCCAAGCCAGATGAAATTACTTTTGTTGGAGTCTTATCAGCTTGTAGTCATGCTGGTCTTGTCAACAAAGGTCAAAGGCTTTTCAATTCAATGAACCATGTTTATGATATAGAACCAAAGGCCCAGCACTATTCCTGCCTTGTGGACATCTTAGGCCGAGCAGGACTAGTGGATGAGGCTACGAAGGTAGTACGCATGATGCCTGCTTCTGAGAAGGATGCTGCTGTTCTAGGAGCATTGCTTGGTGCTTATAGGTTCCATGGAAATATTCCAATGGCAAGTCTTATTGGAGAGGCACTTCAAGAGCTAGAGCCAGGTAGCTCTGGGGGGTATGTACTCTTAGCAATAATTTATGCTGCACGTGGAAAATGGGATGAATTTGCTCGAGTAAGAAAAAAGATGAAGGAGAGGAATGTGAATAAGGTTCCTGGTTTTAGTCAAATACAAGTGAAGGGCAGGAATCATGTATTTTTTGTGGGGGACAAATCTCATCCTCAAGCTGCTGAGATTTGGGGACTGCTTCAAGAGAATCTCCTACCACACATGTGGGAGATGGGATACTCAAAACGGAATGCATCTCAGATGGATCACCAGAAGAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

683

Amino Acids

77.16

Weight (kDa)

9.32

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 169 - 198 4.5e-07 PPR repeat
PPR_2 PF13041 197 - 229 1.5e-06 PPR repeat family
PPR PF01535 200 - 229 6.8e-07 PPR repeat
PPR_2 PF13041 228 - 261 2.7e-07 PPR repeat family
PPR PF01535 231 - 260 1e-05 PPR repeat
PPR_2 PF13041 352 - 399 6.6e-06 PPR repeat family
PPR_2 PF13041 450 - 498 2.1e-10 PPR repeat family
E_motif PF20431 575 - 631 4.5e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016277)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00100
malus_domestica MD05G1364000.v1.1
prunus_persica Prupe.4G001100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0000131
rosa_laevigata RLG00000030844
rosa_multiflora Rmu_co8477805.1_g000001 Rmu_sc0003125.1_g000003 Rmu_ssc0000243.1_g000018
rosa_roxburghii Rroxscaffold_1G00075970
rosa_rugosa Rorug04G0381800
rosa_samantha Rh5AG000900 Rh5BG002100 Rh5CG001000 Rh5DG000900
rosa_wichuraiana Rw5G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 1408
AccII CGCG 1 cut(s) 655
AciI CCGC 4 cut(s) 12, 96, 208, 543
AclWI GGATC 2 cut(s) 610, 2040
AcsI RAATTY 2 cut(s) 154, 1823
AcuI CTGAAG 1 cut(s) 835
AcvI CACGTG 1 cut(s) 1808
AfaI GTAC 3 cut(s) 941, 1638, 1782
AfiI CCNNNNNNNGG 2 cut(s) 84, 1302
AflIII ACRYGT 2 cut(s) 1431, 1989
AhlI ACTAGT 2 cut(s) 1279, 1612
AjnI CCWGG 5 cut(s) 602, 618, 974, 1759, 1873
AjuI GAANNNNNNNTTGG 2 cut(s) 139, 171
AleI CACNNNNGTG 1 cut(s) 1990
Alw21I GWGCWC 1 cut(s) 1193
Alw26I GTCTC 3 cut(s) 325, 697, 1288
AlwI GGATC 2 cut(s) 610, 2040
Ama87I CYCGRG 2 cut(s) 254, 1830
AoxI GGCC 8 cut(s) 8, 390, 451, 558, 1009, 1103, 1566, 1600
ApaI GGGCCC 1 cut(s) 12
ApeKI GCWGC 4 cut(s) 971, 1667, 1802, 1946
ApoI RAATTY 2 cut(s) 154, 1823
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 3 cut(s) 261, 655, 657
AspS9I GGNCC 7 cut(s) 8, 9, 513, 559, 1103, 1234, 1567
AsuC2I CCSGG 1 cut(s) 529
AsuHPI GGTGA 3 cut(s) 1040, 1397, 2027
AsuNHI GCTAGC 1 cut(s) 1178
AvaI CYCGRG 2 cut(s) 254, 1830
AvaII GGWCC 2 cut(s) 513, 1234
BaeGI GKGCMC 1 cut(s) 12
BanII GRGCYC 2 cut(s) 12, 1193
BbrPI CACGTG 1 cut(s) 1808
BbsI GAAGAC 2 cut(s) 803, 1414
Bbv12I GWGCWC 1 cut(s) 1193
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 4 cut(s) 958, 1654, 1789, 1933
BccI CCATC 5 cut(s) 421, 848, 1181, 1993, 2023
BceAI ACGGC 2 cut(s) 438, 642
BciT130I CCWGG 5 cut(s) 604, 620, 976, 1761, 1875
BciVI GTATCC 1 cut(s) 1997
BclI TGATCA 4 cut(s) 336, 708, 730, 1333
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 3 cut(s) 325, 697, 1288
BcuI ACTAGT 2 cut(s) 1279, 1612
BfaI CTAG 6 cut(s) 1179, 1280, 1320, 1613, 1676, 1754
BfoI RGCGCY 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 1408
BfuI GTATCC 1 cut(s) 1997
BisI GCNGC 4 cut(s) 972, 1668, 1803, 1947
BlsI GCNGC 4 cut(s) 973, 1669, 1804, 1948
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 6 cut(s) 529, 604, 620, 976, 1761, 1875
Bme18I GGWCC 2 cut(s) 513, 1234
BmeT110I CYCGRG 2 cut(s) 254, 1830
BmgT120I GGNCC 7 cut(s) 8, 9, 513, 559, 1103, 1234, 1567
BmiI GGNNCC 6 cut(s) 10, 144, 779, 1447, 1703, 1872
BmrFI CCNGG 6 cut(s) 529, 604, 620, 976, 1761, 1875
BmsI GCATC 7 cut(s) 268, 1001, 1128, 1367, 1635, 1654, 2030
BmtI GCTAGC 1 cut(s) 1182
BpiI GAAGAC 2 cut(s) 803, 1414
Bpu10I CCTNAGC 3 cut(s) 135, 462, 1347
BpuEI CTTGAG 1 cut(s) 1926
BpuMI CCSGG 1 cut(s) 529
BsaAI YACGTR 1 cut(s) 1808
BsaJI CCNNGG 2 cut(s) 619, 1705
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 1302
Bse118I RCCGGY 2 cut(s) 167, 1025
Bse1I ACTGG 3 cut(s) 402, 516, 1236
Bse3DI GCAATG 3 cut(s) 1377, 1412, 1682
BseBI CCWGG 5 cut(s) 604, 620, 976, 1761, 1875
BseDI CCNNGG 2 cut(s) 619, 1705
BseGI GGATG 9 cut(s) 10, 48, 59, 1312, 1357, 1624, 1669, 1825, 1936
BseLI CCNNNNNNNGG 2 cut(s) 84, 1302
BseMI GCAATG 3 cut(s) 1377, 1412, 1682
BseMII CTCAG 8 cut(s) 149, 188, 453, 550, 878, 1647, 1941, 2039
BseNI ACTGG 3 cut(s) 402, 516, 1236
BsePI GCGCGC 1 cut(s) 653
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 4 cut(s) 958, 1654, 1789, 1933
BseYI CCCAGC 1 cut(s) 1569
BsgI GTGCAG 1 cut(s) 1788
Bsh1236I CGCG 1 cut(s) 655
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 8 cut(s) 10, 392, 453, 560, 1011, 1105, 1568, 1602
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 1193
BsiHKCI CYCGRG 2 cut(s) 254, 1830
BsiSI CCGG 3 cut(s) 168, 528, 1026
BslFI GGGAC 3 cut(s) 60, 1940, 1974
BslI CCNNNNNNNGG 2 cut(s) 84, 1302
BsmAI GTCTC 3 cut(s) 325, 697, 1288
BsmFI GGGAC 3 cut(s) 60, 1940, 1974
BsmI GAATGC 6 cut(s) 130, 877, 957, 985, 1372, 2023
BsnI GGCC 8 cut(s) 10, 392, 453, 560, 1011, 1105, 1568, 1602
BsoBI CYCGRG 2 cut(s) 254, 1830
Bsp120I GGGCCC 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 12, 1193
Bsp19I CCATGG 1 cut(s) 1705
BspACI CCGC 4 cut(s) 12, 96, 208, 543
BspANI GGCC 8 cut(s) 10, 392, 453, 560, 1011, 1105, 1568, 1602
BspCNI CTCAG 8 cut(s) 148, 189, 454, 549, 877, 1648, 1942, 2038
BspFNI CGCG 1 cut(s) 655
BspLI GGNNCC 6 cut(s) 10, 144, 779, 1447, 1703, 1872
BspMI ACCTGC 1 cut(s) 1408
BspOI GCTAGC 1 cut(s) 1182
BspPI GGATC 2 cut(s) 610, 2040
BsrDI GCAATG 3 cut(s) 1377, 1412, 1682
BsrFI RCCGGY 2 cut(s) 167, 1025
BsrI ACTGG 3 cut(s) 402, 516, 1236
BssAI RCCGGY 2 cut(s) 167, 1025
BssECI CCNNGG 2 cut(s) 619, 1705
BssHII GCGCGC 1 cut(s) 653
BssT1I CCWWGG 1 cut(s) 1705
Bst2UI CCWGG 5 cut(s) 604, 620, 976, 1761, 1875
Bst4CI ACNGT 5 cut(s) 120, 239, 691, 703, 1264
Bst6I CTCTTC 3 cut(s) 761, 854, 2036
BstBAI YACGTR 1 cut(s) 1808
BstC8I GCNNGC 7 cut(s) 12, 451, 631, 655, 1180, 1221, 1650
BstDSI CCRYGG 1 cut(s) 1705
BstEII GGTNACC 1 cut(s) 1403
BstF5I GGATG 9 cut(s) 10, 48, 59, 1312, 1357, 1624, 1669, 1825, 1936
BstFNI CGCG 1 cut(s) 655
BstH2I RGCGCY 1 cut(s) 262
BstHHI GCGC 3 cut(s) 261, 655, 657
BstMAI GTCTC 3 cut(s) 325, 697, 1288
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 6 cut(s) 422, 827, 836, 980, 989, 1188
BstNI CCWGG 5 cut(s) 604, 620, 976, 1761, 1875
BstNSI RCATGY 2 cut(s) 1435, 1993
BstPI GGTNACC 1 cut(s) 1403
BstSCI CCNGG 6 cut(s) 527, 602, 618, 974, 1759, 1873
BstSLI GKGCMC 1 cut(s) 12
BstUI CGCG 1 cut(s) 655
BstV1I GCAGC 4 cut(s) 958, 1654, 1789, 1933
BstV2I GAAGAC 2 cut(s) 803, 1414
BstXI CCANNNNNNTGG 1 cut(s) 1992
BsuI GTATCC 1 cut(s) 1997
BsuRI GGCC 8 cut(s) 10, 392, 453, 560, 1011, 1105, 1568, 1602
BtgI CCRYGG 1 cut(s) 1705
BtgZI GCGATG 2 cut(s) 440, 1159
BtsCI GGATG 9 cut(s) 10, 48, 59, 1312, 1357, 1624, 1669, 1825, 1936
BtsIMutI CAGTG 1 cut(s) 1229
BveI ACCTGC 1 cut(s) 1408
Cac8I GCNNGC 7 cut(s) 12, 451, 631, 655, 1180, 1221, 1650
CfoI GCGC 3 cut(s) 261, 655, 657
Cfr10I RCCGGY 2 cut(s) 167, 1025
Cfr13I GGNCC 7 cut(s) 8, 9, 513, 559, 1103, 1234, 1567
CseI GACGC 2 cut(s) 318, 752
Csp6I GTAC 3 cut(s) 940, 1637, 1781
CviQI GTAC 3 cut(s) 940, 1637, 1781
Eam1104I CTCTTC 3 cut(s) 761, 854, 2036
EarI CTCTTC 3 cut(s) 761, 854, 2036
Ecl136II GAGCTC 1 cut(s) 1191
Eco130I CCWWGG 1 cut(s) 1705
Eco147I AGGCCT 1 cut(s) 1011
Eco24I GRGCYC 2 cut(s) 12, 1193
Eco32I GATATC 1 cut(s) 525
Eco47I GGWCC 2 cut(s) 513, 1234
Eco53kI GAGCTC 1 cut(s) 1191
Eco57I CTGAAG 1 cut(s) 835
Eco72I CACGTG 1 cut(s) 1808
Eco88I CYCGRG 2 cut(s) 254, 1830
Eco91I GGTNACC 1 cut(s) 1403
EcoICRI GAGCTC 1 cut(s) 1191
EcoO65I GGTNACC 1 cut(s) 1403
EcoRI GAATTC 1 cut(s) 154
EcoRII CCWGG 5 cut(s) 602, 618, 974, 1759, 1873
EcoRV GATATC 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 1705
EcoT22I ATGCAT 2 cut(s) 1414, 2023
EcoT38I GRGCYC 2 cut(s) 12, 1193
ErhI CCWWGG 1 cut(s) 1705
FaqI GGGAC 3 cut(s) 60, 1940, 1974
FauI CCCGC 2 cut(s) 19, 103
FauNDI CATATG 1 cut(s) 997
FbaI TGATCA 4 cut(s) 336, 708, 730, 1333
Fnu4HI GCNGC 4 cut(s) 972, 1668, 1803, 1947
FokI GGATG 9 cut(s) 17, 35, 46, 1319, 1364, 1631, 1676, 1832, 1923
FriOI GRGCYC 2 cut(s) 12, 1193
Fsp4HI GCNGC 4 cut(s) 972, 1668, 1803, 1947
FspBI CTAG 6 cut(s) 1179, 1280, 1320, 1613, 1676, 1754
GlaI GCGC 3 cut(s) 260, 654, 656
GluI GCNGC 4 cut(s) 972, 1668, 1803, 1947
GsaI CCCAGC 1 cut(s) 1573
HaeII RGCGCY 1 cut(s) 262
HaeIII GGCC 8 cut(s) 10, 392, 453, 560, 1011, 1105, 1568, 1602
HapII CCGG 3 cut(s) 168, 528, 1026
HgaI GACGC 2 cut(s) 318, 752
HhaI GCGC 3 cut(s) 261, 655, 657
Hin6I GCGC 3 cut(s) 259, 653, 655
HinP1I GCGC 3 cut(s) 259, 653, 655
HincII GTYRAC 3 cut(s) 553, 1003, 1510
HindII GTYRAC 3 cut(s) 553, 1003, 1510
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 8 cut(s) 199, 314, 419, 1072, 1081, 1476, 1906, 1975
HpaII CCGG 3 cut(s) 168, 528, 1026
HphI GGTGA 3 cut(s) 1040, 1397, 2027
Hpy166II GTNNAC 5 cut(s) 346, 553, 1003, 1510, 1591
Hpy188I TCNGA 5 cut(s) 867, 1077, 1137, 1657, 2028
Hpy188III TCNNGA 4 cut(s) 1296, 1443, 1748, 1970
Hpy8I GTNNAC 5 cut(s) 346, 553, 1003, 1510, 1591
Hpy99I CGWCG 5 cut(s) 177, 180, 183, 299, 567
HpyAV CCTTC 5 cut(s) 1001, 1624, 1654, 1843, 1891
HpyCH4III ACNGT 5 cut(s) 120, 239, 691, 703, 1264
HpyCH4IV ACGT 2 cut(s) 1099, 1807
HpyF10VI GCNNNNNNNGC 6 cut(s) 422, 827, 836, 980, 989, 1188
HpySE526I ACGT 2 cut(s) 1099, 1807
HspAI GCGC 3 cut(s) 259, 653, 655
Ksp22I TGATCA 4 cut(s) 336, 708, 730, 1333
LmnI GCTCC 4 cut(s) 142, 1210, 1445, 1679
Lsp1109I GCAGC 4 cut(s) 958, 1654, 1789, 1933
LweI GCATC 7 cut(s) 268, 1001, 1128, 1367, 1635, 1654, 2030
MaeI CTAG 6 cut(s) 1179, 1280, 1320, 1613, 1676, 1754
MaeII ACGT 2 cut(s) 1099, 1807
MaeIII GTNAC 6 cut(s) 233, 623, 895, 1063, 1309, 1403
MboII GAAGA 6 cut(s) 356, 364, 748, 803, 841, 1414
MhlI GDGCHC 2 cut(s) 12, 1193
MluCI AATT 9 cut(s) 154, 734, 876, 1131, 1461, 1531, 1794, 1823, 2047
MlyI GAGTC 2 cut(s) 208, 1485
MmeI TCCRAC 1 cut(s) 1453
Mph1103I ATGCAT 2 cut(s) 1414, 2023
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 4 cut(s) 666, 816, 1121, 1436
MslI CAYNNNNRTG 4 cut(s) 53, 1398, 1548, 1990
MspI CCGG 3 cut(s) 168, 528, 1026
MspR9I CCNGG 6 cut(s) 529, 604, 620, 976, 1761, 1875
Mva1269I GAATGC 6 cut(s) 130, 877, 957, 985, 1372, 2023
MvaI CCWGG 5 cut(s) 604, 620, 976, 1761, 1875
MvnI CGCG 1 cut(s) 655
MwoI GCNNNNNNNGC 6 cut(s) 422, 827, 836, 980, 989, 1188
NciI CCSGG 1 cut(s) 529
NcoI CCATGG 1 cut(s) 1705
NdeI CATATG 1 cut(s) 997
NheI GCTAGC 1 cut(s) 1178
NlaIV GGNNCC 6 cut(s) 10, 144, 779, 1447, 1703, 1872
NmeAIII GCCGAG 1 cut(s) 1628
NmuCI GTSAC 1 cut(s) 1403
NsiI ATGCAT 2 cut(s) 1414, 2023
NspI RCATGY 2 cut(s) 1435, 1993
OliI CACNNNNGTG 1 cut(s) 1990
PaeR7I CTCGAG 1 cut(s) 1830
PauI GCGCGC 1 cut(s) 653
PceI AGGCCT 1 cut(s) 1011
PciI ACATGT 2 cut(s) 1431, 1989
PcsI WCGNNNNNNNCGW 1 cut(s) 178
PctI GAATGC 6 cut(s) 130, 877, 957, 985, 1372, 2023
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 6 cut(s) 314, 419, 1072, 1081, 1906, 1975
PflFI GACNNNGTC 1 cut(s) 1262
PfoI TCCNGGA 1 cut(s) 602
PkrI GCNGC 4 cut(s) 973, 1669, 1804, 1948
PleI GAGTC 2 cut(s) 207, 1484
PmaCI CACGTG 1 cut(s) 1808
PmlI CACGTG 1 cut(s) 1808
PpsI GAGTC 2 cut(s) 207, 1484
Ppu21I YACGTR 1 cut(s) 1808
PscI ACATGT 2 cut(s) 1431, 1989
PsiI TTATAA 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 1193
Psp6I CCWGG 5 cut(s) 602, 618, 974, 1759, 1873
PspCI CACGTG 1 cut(s) 1808
PspEI GGTNACC 1 cut(s) 1403
PspFI CCCAGC 1 cut(s) 1569
PspGI CCWGG 5 cut(s) 602, 618, 974, 1759, 1873
PspN4I GGNNCC 6 cut(s) 10, 144, 779, 1447, 1703, 1872
PspOMI GGGCCC 1 cut(s) 8
PspPI GGNCC 7 cut(s) 8, 9, 513, 559, 1103, 1234, 1567
PspXI VCTCGAGB 1 cut(s) 1830
PsyI GACNNNGTC 1 cut(s) 1262
PteI GCGCGC 1 cut(s) 653
RsaI GTAC 3 cut(s) 941, 1638, 1782
RsaNI GTAC 3 cut(s) 940, 1637, 1781
RseI CAYNNNNRTG 4 cut(s) 53, 1398, 1548, 1990
SacI GAGCTC 1 cut(s) 1193
SaqAI TTAA 4 cut(s) 666, 816, 1121, 1436
SatI GCNGC 4 cut(s) 972, 1668, 1803, 1947
Sau96I GGNCC 7 cut(s) 8, 9, 513, 559, 1103, 1234, 1567
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 2 cut(s) 208, 1485
ScrFI CCNGG 6 cut(s) 529, 604, 620, 976, 1761, 1875
SduI GDGCHC 2 cut(s) 12, 1193
SfaNI GCATC 7 cut(s) 268, 1001, 1128, 1367, 1635, 1654, 2030
Sfr274I CTCGAG 1 cut(s) 1830
SinI GGWCC 2 cut(s) 513, 1234
SlaI CTCGAG 1 cut(s) 1830
SmiMI CAYNNNNRTG 4 cut(s) 53, 1398, 1548, 1990
SmlI CTYRAG 2 cut(s) 1830, 1941
SmoI CTYRAG 2 cut(s) 1830, 1941
SpeI ACTAGT 2 cut(s) 1279, 1612
Sse9I AATT 9 cut(s) 154, 734, 876, 1131, 1461, 1531, 1794, 1823, 2047
SseBI AGGCCT 1 cut(s) 1011
SsiI CCGC 4 cut(s) 12, 96, 208, 543
SspI AATATT 2 cut(s) 409, 1714
SspMI CTAG 6 cut(s) 1179, 1280, 1320, 1613, 1676, 1754
SstI GAGCTC 1 cut(s) 1193
StuI AGGCCT 1 cut(s) 1011
StyD4I CCNGG 6 cut(s) 527, 602, 618, 974, 1759, 1873
StyI CCWWGG 1 cut(s) 1705
TaaI ACNGT 5 cut(s) 120, 239, 691, 703, 1264
TaiI ACGT 2 cut(s) 1102, 1810
TaqI TCGA 4 cut(s) 158, 294, 949, 1831
TasI AATT 9 cut(s) 154, 734, 876, 1131, 1461, 1531, 1794, 1823, 2047
TatI WGTACW 2 cut(s) 939, 1780
TfiI GAWTC 6 cut(s) 314, 419, 1072, 1081, 1906, 1975
Tru1I TTAA 4 cut(s) 666, 816, 1121, 1436
Tru9I TTAA 4 cut(s) 666, 816, 1121, 1436
TscAI CASTG 1 cut(s) 1236
TseFI GTSAC 1 cut(s) 1403
TseI GCWGC 4 cut(s) 971, 1667, 1802, 1946
Tsp45I GTSAC 1 cut(s) 1403
TspDTI ATGAA 7 cut(s) 663, 1033, 1073, 1473, 1553, 1836, 1862
TspGWI ACGGA 4 cut(s) 62, 790, 1223, 2029
TspRI CASTG 1 cut(s) 1236
Tth111I GACNNNGTC 1 cut(s) 1262
VpaK11BI GGWCC 2 cut(s) 513, 1234
XapI RAATTY 2 cut(s) 154, 1823
XceI RCATGY 2 cut(s) 1435, 1993
XhoI CTCGAG 1 cut(s) 1830
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 6 cut(s) 1179, 1280, 1320, 1613, 1676, 1754
ZrmI AGTACT 1 cut(s) 941
Zsp2I ATGCAT 2 cut(s) 1414, 2023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.