Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017052

Physical Location & Seq

Genomic Coordinates Reverse (-)

10006690 .. 10010892

Gene Structure 4203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGAGGGAGGACTACATGTAGAGGCAGATTCATCAGCTTTCAGAGACTGTTTCTCTTTGGCATGGAAGAACCCATATGTTCTTCGTCTGGCCTTCTCTGCTGGAATTGGTGGCCTCCTCTTTGGCTATGACACAGGAGTTATATCAGGAGCTCTTCTTTACATCAGGGATGACTTCCAAGTCTGTGGACAGAGAGACTGTCTTACAGTGCCCGGAGCCATCATTGGAGCTGCAATAGGGGATGGTCGAACGATCGGTATGGAAGAAGAAAATGGCATCAATGAGAGCTCCCTTGTACATCTCGGAAGGTCTCCTGCCAAAATCCGAGGTGCCCTTGTTAGTACCAATGGGCTTCTCATTACTGGTGGGCAGTTCCTATCTTACCTCATCAATTTGGGTTCCACCAAGGCAAGCTCCAGGGACTTAGCGGTGGATGCTTGGAGTTGCAGGAATTACAGCTCTTCTGCAGTTCATCCTAATGCTGCTCCTTCCAGAATCTCCACGTTGGCTATTCTGAAAGGTGTTTCTAAAATTAGCATTGTTGAGCTTTTGAGAACGAAAACGGTGCAAAGAGGACTAATAGCTGGTGTTGGCCTTCAAGTCTTCCAACAGTTTGTGGGAATAAATACGGTGATGTATTACAATCCCACCATAGTTTTGTTGGCAGGCTTTGCATCAAATCAAACGGCACTGCTTCTCTCACTTGTAACTGCTAGTCTCAATGCCTTCGGCTCCATTGTGAGCATATACTTCATTGACAGAACTGGCAGGAAAAAGCTTCTAATCATCAGTTTGCTTGGAGTTATTATTGCACTTGGTCTTTTATTAGCAGTTTTCCATGAGACTACTTCTCATTCGCCTCTCATAAGCCTGATTGAAACATCTCATTTCACAAACTACACTTGTCTAGATTATAGTTCAGCCGGAAACTCTGCAGCTTGGGACTGCATGAAGTGTTTGAAGTCTTCATCTCCGGACTGTGGGTTCTGTGCTTCAAAGGTTGATAAGCTACTTCCGAGAGCTTGTTTGATCTCAAATGATACAACAAAGGATAGTTGCCATGGAGAAGACAGGTTGTGGTACACAAGGGGATGTCCAAGCAAGTATGGTTTGGCTTGCACTAATTGGCCTGGCCCTTTACATCACATTTTTTTCTCCGGGAATGGGCATTGTGCAATGGATTGTCAACTAAGAGATCTATCCTTTAAGGCAATTGGAACTTCTTGGACATTCCTGATATTCGGGATCATTTCCTTTCCGGCCTTGATCTTTGTCCTCATTTTCGTCCCAGAAACCGAGGGGCTTCCAATTGAAGAGTTTGAGAAGATGCTAGAGCTGAGGGCTTTGCACTTCAAGTTCTGGGAAAAAGGCCCAAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

460

Amino Acids

49.84

Weight (kDa)

7.87

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	177 - 279	5.7e-21	Sugar (and other) transporter
MFS_1	PF07690	204 - 283	8.9e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30220
prunus_persica	Prupe.4G083700_v2.0.a1 Prupe.4G083700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014501
rosa_laevigata	RLG00000032118
rosa_roxburghii	Rroxscaffold_1G00062030
rosa_rugosa	Rorug05G0018600 Rorug05G0018700
rosa_samantha	Rh5AG114000 Rh5BG110700 Rh5BG110900 Rh5CG122500
rosa_wichuraiana	Rw5G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	973
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	1 cut(s)	1253
AfaI	GTAC	3 cut(s)	297, 343, 1082
AfiI	CCNNNNNNNGG	2 cut(s)	980, 1164
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	6 cut(s)	599, 878, 961, 996, 1313, 1354
AjnI	CCWGG	2 cut(s)	416, 1129
AloI	GAACNNNNNNTCC	2 cut(s)	968, 1000
Alw21I	GWGCWC	2 cut(s)	154, 290
Alw26I	GTCTC	5 cut(s)	39, 189, 315, 722, 836
AlwI	GGATC	1 cut(s)	1253
AlwNI	CAGNNNCTG	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	973
AoxI	GGCC	7 cut(s)	90, 112, 592, 1127, 1132, 1260, 1369
ApeKI	GCWGC	3 cut(s)	230, 482, 935
AspS9I	GGNCC	2 cut(s)	1133, 1370
AsuC2I	CCSGG	2 cut(s)	213, 1159
AsuHPI	GGTGA	1 cut(s)	643
BaeGI	GKGCMC	2 cut(s)	213, 334
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	2 cut(s)	154, 290
BbsI	GAAGAC	3 cut(s)	595, 957, 1074
Bbv12I	GWGCWC	2 cut(s)	154, 290
BbvCI	CCTCAGC	1 cut(s)	1337
BbvI	GCAGC	3 cut(s)	217, 469, 947
BccI	CCATC	2 cut(s)	227, 236
BceAI	ACGGC	1 cut(s)	702
BcgI	CGANNNNNNTGC	2 cut(s)	547, 581
BciT130I	CCWGG	2 cut(s)	418, 1131
BcnI	CCSGG	2 cut(s)	213, 1159
BcoDI	GTCTC	5 cut(s)	39, 189, 315, 722, 836
BfaI	CTAG	4 cut(s)	714, 908, 1331, 1381
BfmI	CTRYAG	2 cut(s)	465, 933
BglII	AGATCT	1 cut(s)	1195
BisI	GCNGC	3 cut(s)	231, 483, 936
BlsI	GCNGC	3 cut(s)	232, 484, 937
Bme1390I	CCNGG	4 cut(s)	213, 418, 1131, 1159
BmgT120I	GGNCC	2 cut(s)	1133, 1370
BmiI	GGNNCC	4 cut(s)	217, 331, 400, 733
BmrFI	CCNGG	4 cut(s)	213, 418, 1131, 1159
BmsI	GCATC	4 cut(s)	285, 424, 683, 1317
BpiI	GAAGAC	3 cut(s)	595, 957, 1074
BpmI	CTGGAG	1 cut(s)	400
Bpu10I	CCTNAGC	1 cut(s)	1337
BpuMI	CCSGG	2 cut(s)	213, 1159
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	5 cut(s)	325, 405, 417, 1060, 1296
BsaWI	WCCGGW	1 cut(s)	973
Bsc4I	CCNNNNNNNGG	2 cut(s)	980, 1164
Bse1I	ACTGG	2 cut(s)	367, 769
Bse3DI	GCAATG	1 cut(s)	1182
BseAI	TCCGGA	1 cut(s)	973
BseBI	CCWGG	2 cut(s)	418, 1131
BseDI	CCNNGG	5 cut(s)	325, 405, 417, 1060, 1296
BseGI	GGATG	5 cut(s)	175, 247, 439, 472, 1097
BseLI	CCNNNNNNNGG	2 cut(s)	980, 1164
BseMI	GCAATG	1 cut(s)	1182
BseMII	CTCAG	1 cut(s)	1328
BseNI	ACTGG	2 cut(s)	367, 769
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	2 cut(s)	213, 334
BseXI	GCAGC	3 cut(s)	217, 469, 947
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	7 cut(s)	92, 114, 594, 1129, 1134, 1262, 1371
BshNI	GGYRCC	1 cut(s)	329
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	154, 290
BsiSI	CCGG	5 cut(s)	213, 924, 974, 1158, 1259
BslFI	GGGAC	3 cut(s)	434, 956, 1271
BslI	CCNNNNNNNGG	2 cut(s)	980, 1164
BsmAI	GTCTC	5 cut(s)	39, 189, 315, 722, 836
BsmFI	GGGAC	3 cut(s)	434, 956, 1271
BsnI	GGCC	7 cut(s)	92, 114, 594, 1129, 1134, 1262, 1371
Bso31I	GGTCTC	1 cut(s)	315
Bsp1286I	GDGCHC	4 cut(s)	154, 213, 290, 334
Bsp13I	TCCGGA	1 cut(s)	973
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	252, 1029, 1195, 1245, 1266
Bsp19I	CCATGG	1 cut(s)	1060
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	7 cut(s)	92, 114, 594, 1129, 1134, 1262, 1371
BspCNI	CTCAG	1 cut(s)	1329
BspEI	TCCGGA	1 cut(s)	973
BspLI	GGNNCC	4 cut(s)	217, 331, 400, 733
BspMAI	CTGCAG	2 cut(s)	469, 937
BspPI	GGATC	1 cut(s)	1253
BspQI	GCTCTTC	2 cut(s)	159, 466
BspT107I	GGYRCC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	1182
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	367, 769
BssECI	CCNNGG	5 cut(s)	325, 405, 417, 1060, 1296
BssMI	GATC	5 cut(s)	252, 1029, 1195, 1245, 1266
BssT1I	CCWWGG	2 cut(s)	405, 1060
Bst2UI	CCWGG	2 cut(s)	418, 1131
Bst4CI	ACNGT	7 cut(s)	50, 200, 208, 565, 612, 631, 980
Bst6I	CTCTTC	3 cut(s)	159, 466, 1308
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstAUI	TGTACA	1 cut(s)	295
BstC8I	GCNNGC	3 cut(s)	412, 667, 1117
BstDEI	CTNAG	3 cut(s)	424, 1190, 1337
BstDSI	CCRYGG	1 cut(s)	1060
BstF5I	GGATG	5 cut(s)	175, 247, 439, 472, 1097
BstKTI	GATC	5 cut(s)	255, 1032, 1198, 1248, 1269
BstMAI	GTCTC	5 cut(s)	39, 189, 315, 722, 836
BstMBI	GATC	5 cut(s)	252, 1029, 1195, 1245, 1266
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 434, 671
BstNI	CCWGG	2 cut(s)	418, 1131
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	4 cut(s)	211, 416, 1129, 1157
BstSFI	CTRYAG	2 cut(s)	465, 933
BstSLI	GKGCMC	2 cut(s)	213, 334
BstV1I	GCAGC	3 cut(s)	217, 469, 947
BstV2I	GAAGAC	3 cut(s)	595, 957, 1074
BstX2I	RGATCY	1 cut(s)	1195
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	1195
BsuRI	GGCC	7 cut(s)	92, 114, 594, 1129, 1134, 1262, 1371
BtgI	CCRYGG	1 cut(s)	1060
BtsCI	GGATG	5 cut(s)	175, 247, 439, 472, 1097
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	2 cut(s)	213, 689
Cac8I	GCNNGC	3 cut(s)	412, 667, 1117
CaiI	CAGNNNCTG	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	1133, 1370
Csp6I	GTAC	3 cut(s)	296, 342, 1081
CviAII	CATG	5 cut(s)	17, 63, 839, 949, 1061
CviQI	GTAC	3 cut(s)	296, 342, 1081
DdeI	CTNAG	3 cut(s)	424, 1190, 1337
DpnI	GATC	5 cut(s)	254, 1031, 1197, 1247, 1268
DpnII	GATC	5 cut(s)	252, 1029, 1195, 1245, 1266
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	3 cut(s)	159, 466, 1308
EarI	CTCTTC	3 cut(s)	159, 466, 1308
Ecl136II	GAGCTC	2 cut(s)	152, 288
Eco130I	CCWWGG	2 cut(s)	405, 1060
Eco24I	GRGCYC	2 cut(s)	154, 290
Eco31I	GGTCTC	1 cut(s)	315
Eco53kI	GAGCTC	2 cut(s)	152, 288
EcoICRI	GAGCTC	2 cut(s)	152, 288
EcoRII	CCWGG	2 cut(s)	416, 1129
EcoT14I	CCWWGG	2 cut(s)	405, 1060
EcoT38I	GRGCYC	2 cut(s)	154, 290
ErhI	CCWWGG	2 cut(s)	405, 1060
FaeI	CATG	5 cut(s)	20, 66, 842, 952, 1064
FaqI	GGGAC	3 cut(s)	434, 956, 1271
FatI	CATG	5 cut(s)	16, 62, 838, 948, 1060
FauNDI	CATATG	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	231, 483, 936
FokI	GGATG	5 cut(s)	182, 254, 446, 459, 1104
FriOI	GRGCYC	2 cut(s)	154, 290
Fsp4HI	GCNGC	3 cut(s)	231, 483, 936
FspBI	CTAG	4 cut(s)	714, 908, 1331, 1381
GluI	GCNGC	3 cut(s)	231, 483, 936
GsuI	CTGGAG	1 cut(s)	400
HaeIII	GGCC	7 cut(s)	92, 114, 594, 1129, 1134, 1262, 1371
HapII	CCGG	5 cut(s)	213, 924, 974, 1158, 1259
Hin1II	CATG	5 cut(s)	20, 66, 842, 952, 1064
HincII	GTYRAC	1 cut(s)	1187
HindII	GTYRAC	1 cut(s)	1187
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	3 cut(s)	29, 495, 1377
HpaII	CCGG	5 cut(s)	213, 924, 974, 1158, 1259
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	3 cut(s)	188, 1083, 1187
Hpy188I	TCNGA	5 cut(s)	44, 305, 326, 516, 1017
Hpy188III	TCNNGA	6 cut(s)	147, 492, 908, 974, 1234, 1243
Hpy8I	GTNNAC	3 cut(s)	188, 1083, 1187
HpyAV	CCTTC	5 cut(s)	103, 300, 498, 605, 736
HpyCH4III	ACNGT	7 cut(s)	50, 200, 208, 565, 612, 631, 980
HpyCH4IV	ACGT	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 434, 671
HpyF3I	CTNAG	3 cut(s)	424, 1190, 1337
HpySE526I	ACGT	1 cut(s)	503
Hsp92II	CATG	5 cut(s)	20, 66, 842, 952, 1064
Kpn2I	TCCGGA	1 cut(s)	973
Kzo9I	GATC	5 cut(s)	252, 1029, 1195, 1245, 1266
LguI	GCTCTTC	2 cut(s)	159, 466
LmnI	GCTCC	7 cut(s)	149, 215, 227, 293, 419, 490, 737
Lsp1109I	GCAGC	3 cut(s)	217, 469, 947
LweI	GCATC	4 cut(s)	285, 424, 683, 1317
MaeI	CTAG	4 cut(s)	714, 908, 1331, 1381
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	5 cut(s)	254, 1031, 1197, 1247, 1268
MboI	GATC	5 cut(s)	252, 1029, 1195, 1245, 1266
MfeI	CAATTG	2 cut(s)	1212, 1308
MflI	RGATCY	1 cut(s)	1195
MhlI	GDGCHC	4 cut(s)	154, 213, 290, 334
MluCI	AATT	7 cut(s)	105, 391, 451, 531, 1123, 1212, 1308
MlyI	GAGTC	1 cut(s)	1371
MmeI	TCCRAC	1 cut(s)	631
MroI	TCCGGA	1 cut(s)	973
MseI	TTAA	1 cut(s)	1206
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	5 cut(s)	213, 924, 974, 1158, 1259
MspR9I	CCNGG	4 cut(s)	213, 418, 1131, 1159
MunI	CAATTG	2 cut(s)	1212, 1308
MvaI	CCWGG	2 cut(s)	418, 1131
MwoI	GCNNNNNNNGC	3 cut(s)	98, 434, 671
NciI	CCSGG	2 cut(s)	213, 1159
NcoI	CCATGG	1 cut(s)	1060
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	5 cut(s)	252, 1029, 1195, 1245, 1266
NlaIII	CATG	5 cut(s)	20, 66, 842, 952, 1064
NlaIV	GGNNCC	4 cut(s)	217, 331, 400, 733
NspI	RCATGY	1 cut(s)	20
PciI	ACATGT	1 cut(s)	16
PciSI	GCTCTTC	2 cut(s)	159, 466
PfeI	GAWTC	2 cut(s)	29, 495
PfoI	TCCNGGA	1 cut(s)	1157
PkrI	GCNGC	3 cut(s)	232, 484, 937
Ple19I	CGATCG	1 cut(s)	255
PleI	GAGTC	1 cut(s)	1371
PpsI	GAGTC	1 cut(s)	1371
PscI	ACATGT	1 cut(s)	16
Psp124BI	GAGCTC	2 cut(s)	154, 290
Psp6I	CCWGG	2 cut(s)	416, 1129
PspGI	CCWGG	2 cut(s)	416, 1129
PspN4I	GGNNCC	4 cut(s)	217, 331, 400, 733
PspPI	GGNCC	2 cut(s)	1133, 1370
PstI	CTGCAG	2 cut(s)	469, 937
PstNI	CAGNNNCTG	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	1195
PvuI	CGATCG	1 cut(s)	255
RsaI	GTAC	3 cut(s)	297, 343, 1082
RsaNI	GTAC	3 cut(s)	296, 342, 1081
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	2 cut(s)	154, 290
SapI	GCTCTTC	2 cut(s)	159, 466
SaqAI	TTAA	1 cut(s)	1206
SatI	GCNGC	3 cut(s)	231, 483, 936
Sau3AI	GATC	5 cut(s)	252, 1029, 1195, 1245, 1266
Sau96I	GGNCC	2 cut(s)	1133, 1370
SchI	GAGTC	1 cut(s)	1371
ScrFI	CCNGG	4 cut(s)	213, 418, 1131, 1159
SduI	GDGCHC	4 cut(s)	154, 213, 290, 334
SfaNI	GCATC	4 cut(s)	285, 424, 683, 1317
SfcI	CTRYAG	2 cut(s)	465, 933
SmiMI	CAYNNNNRTG	1 cut(s)	477
Sse9I	AATT	7 cut(s)	105, 391, 451, 531, 1123, 1212, 1308
SsiI	CCGC	1 cut(s)	428
SspMI	CTAG	4 cut(s)	714, 908, 1331, 1381
SstI	GAGCTC	2 cut(s)	154, 290
StyD4I	CCNGG	4 cut(s)	211, 416, 1129, 1157
StyI	CCWWGG	2 cut(s)	405, 1060
TaaI	ACNGT	7 cut(s)	50, 200, 208, 565, 612, 631, 980
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	1 cut(s)	247
TasI	AATT	7 cut(s)	105, 391, 451, 531, 1123, 1212, 1308
TatI	WGTACW	1 cut(s)	295
TfiI	GAWTC	2 cut(s)	29, 495
Tru1I	TTAA	1 cut(s)	1206
Tru9I	TTAA	1 cut(s)	1206
TscAI	CASTG	2 cut(s)	213, 696
TseI	GCWGC	3 cut(s)	230, 482, 935
TspDTI	ATGAA	5 cut(s)	21, 461, 742, 957, 965
TspRI	CASTG	2 cut(s)	213, 696
XbaI	TCTAGA	1 cut(s)	907
XceI	RCATGY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XspI	CTAG	4 cut(s)	714, 908, 1331, 1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.