Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0017052

Physical Location & Seq

Genomic Coordinates Reverse (-)

10744070 .. 10747467

Gene Structure 3398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G009880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAGGGAGGACTACATGTAGAGGCAGATTCATCAGCTTTCAGAGACTGTTTCTCTTTGGCATGGAAGAACCCATATGTTCTTCGTCTGGCCTTCTCTGCTGGAATTGGTGGCCTCCTCTTTGGCTATGACACAGAAGAAGTGCAATCCTTAATTATAGCAGATTTCCTATTCTTCATTGGTGCTGTGATCATGGCCTCAGCTCCTAACCCAGCTCTTCTCATTGTTTGCCGTGTTTTTGTTGGACTTGGTGTTGGAATGGCATCAATGACAGCTCCCTTGTACTTCTCGGAAGCGTCTCCTGCCAAAATCCGAGGTGCCCTTGTTAGTACCAATGGGTTTCTCATTACTGGTGGGCAGTTCCTGTCTTACCTCATCAATTTGGGTTCCACCAAGGCTCCAGGGACTTGGCGGTGGATGCTTGGTGTTGCAGGAATTCCAGCTCTTCTGCAGTTCATCCTAATGCTGCTCCTTCCAGAATCTCCACGTTGGCTATTCCGAAAGAAAATTAGCATTGTTGAGCTTTTGAGAACGAAAACGGTGCGAAGAGGACTAATGGCTGGTGTTGGGCTTCAAGTCTTCCAGCAGTTTGTGGGAATAAATACGGTGATGTATTACAGTCCCACCATAGTTCTTCTCAATGCCTTCGGCTCCATTGTGAGCATATACTTCATTGACAGAACTGGGAGGAAGAAGCTTCTAATCATCAGTTTGCTTGGAGTTATTATTGCACTTGGTCTTTTATCAGCAGTTTTCCATGAGACTACTTCTCATTCGCCTCTCATAAGCCCGATTGAAACATCTCATTTCACAAACTACACCTGTCCAGATTATAGTTCAGCCGGAAACTCTGCAGCTTGGGACTGCATGAATATGGTTTGGCTTGCACTAATTGGCCTGGGCCTCTACATCACATTTTCTTCTCCGGGAATGGGCACTGTGCCATGGATTGTCAACTCAGAGATCTATTCTTTAAGGTATTGCGGGGTGTGTGGAGGAATAACAGCTACAGCCAACTGGATTTCAAACCTCATTGTTGCACAGTCCTTCCTATCTCTGACTCAGGCAATTGGAACTTCTTGGACATTCCTGATATTCGGGATCATTTCCTTCCCAGCCTTGATCTTTGTCCTCATTTTCGTCCCAGAAACCGAGGGGCTTCCAATTGAAGAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

392

Amino Acids

42.54

Weight (kDa)

6.89

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	49 - 169	2e-37	Sugar (and other) transporter
MFS_1	PF07690	50 - 253	4.1e-13	Major Facilitator Superfamily
Sugar_tr	PF00083	169 - 391	5.3e-32	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30220
prunus_persica	Prupe.4G083700_v2.0.a1 Prupe.4G083700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014501
rosa_laevigata	RLG00000032118
rosa_roxburghii	Rroxscaffold_1G00062030
rosa_rugosa	Rorug05G0018600 Rorug05G0018700
rosa_samantha	Rh5AG114000 Rh5BG110700 Rh5BG110900 Rh5CG122500
rosa_wichuraiana	Rw5G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AciI	CCGC	2 cut(s)	412, 984
AclWI	GGATC	1 cut(s)	1109
AcsI	RAATTY	1 cut(s)	435
AfaI	GTAC	2 cut(s)	284, 331
AfiI	CCNNNNNNNGG	1 cut(s)	932
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	575, 797, 1026, 1169
AjnI	CCWGG	2 cut(s)	400, 897
AluBI	AGCT	9 cut(s)	38, 203, 215, 275, 443, 523, 697, 857, 1007
AluI	AGCT	9 cut(s)	38, 203, 215, 275, 443, 523, 697, 857, 1007
Alw26I	GTCTC	3 cut(s)	39, 303, 755
AlwI	GGATC	1 cut(s)	1109
AlwNI	CAGNNNCTG	2 cut(s)	48, 364
AoxI	GGCC	5 cut(s)	90, 112, 195, 895, 901
ApeKI	GCWGC	2 cut(s)	466, 854
ApoI	RAATTY	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	901
AsuC2I	CCSGG	1 cut(s)	927
AsuHPI	GGTGA	1 cut(s)	619
BaeGI	GKGCMC	2 cut(s)	322, 938
BanI	GGYRCC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	571
BbvCI	CCTCAGC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	453, 866
BceAI	ACGGC	1 cut(s)	216
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BciT130I	CCWGG	2 cut(s)	402, 899
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	927
BcoDI	GTCTC	3 cut(s)	39, 303, 755
BfmI	CTRYAG	3 cut(s)	449, 852, 1008
BglII	AGATCT	1 cut(s)	963
BisI	GCNGC	2 cut(s)	467, 855
BlsI	GCNGC	2 cut(s)	468, 856
Bme1390I	CCNGG	3 cut(s)	402, 899, 927
BmgT120I	GGNCC	1 cut(s)	901
BmiI	GGNNCC	4 cut(s)	319, 388, 399, 652
BmrFI	CCNGG	3 cut(s)	402, 899, 927
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	2 cut(s)	272, 408
BmuI	ACTGGG	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	927
BsaJI	CCNNGG	6 cut(s)	313, 393, 401, 898, 944, 1152
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	932
Bse1I	ACTGG	3 cut(s)	355, 688, 1022
BseBI	CCWGG	2 cut(s)	402, 899
BseDI	CCNNGG	6 cut(s)	313, 393, 401, 898, 944, 1152
BseGI	GGATG	2 cut(s)	423, 456
BseLI	CCNNNNNNNGG	1 cut(s)	932
BseMII	CTCAG	3 cut(s)	213, 972, 1076
BseNI	ACTGG	3 cut(s)	355, 688, 1022
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	2 cut(s)	322, 938
BseXI	GCAGC	2 cut(s)	453, 866
BseYI	CCCAGC	2 cut(s)	211, 1114
BshFI	GGCC	5 cut(s)	92, 114, 197, 897, 903
BshNI	GGYRCC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	843, 926
BslFI	GGGAC	4 cut(s)	418, 606, 875, 1127
BslI	CCNNNNNNNGG	1 cut(s)	932
BsmAI	GTCTC	3 cut(s)	39, 303, 755
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	4 cut(s)	418, 606, 875, 1127
BsnI	GGCC	5 cut(s)	92, 114, 197, 897, 903
Bsp1286I	GDGCHC	2 cut(s)	322, 938
Bsp143I	GATC	4 cut(s)	189, 963, 1101, 1122
Bsp19I	CCATGG	1 cut(s)	944
BspACI	CCGC	2 cut(s)	412, 984
BspANI	GGCC	5 cut(s)	92, 114, 197, 897, 903
BspCNI	CTCAG	3 cut(s)	212, 971, 1075
BspLI	GGNNCC	4 cut(s)	319, 388, 399, 652
BspMAI	CTGCAG	2 cut(s)	453, 856
BspPI	GGATC	1 cut(s)	1109
BspQI	GCTCTTC	2 cut(s)	222, 450
BspT107I	GGYRCC	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	355, 688, 1022
BssECI	CCNNGG	6 cut(s)	313, 393, 401, 898, 944, 1152
BssMI	GATC	4 cut(s)	189, 963, 1101, 1122
BssT1I	CCWWGG	2 cut(s)	393, 944
Bst2UI	CCWGG	2 cut(s)	402, 899
Bst4CI	ACNGT	6 cut(s)	50, 541, 607, 620, 940, 1044
Bst6I	CTCTTC	4 cut(s)	222, 450, 541, 1164
BstC8I	GCNNGC	1 cut(s)	885
BstDEI	CTNAG	3 cut(s)	199, 958, 1062
BstDSI	CCRYGG	1 cut(s)	944
BstF5I	GGATG	2 cut(s)	423, 456
BstKTI	GATC	4 cut(s)	192, 966, 1104, 1125
BstMAI	GTCTC	3 cut(s)	39, 303, 755
BstMBI	GATC	4 cut(s)	189, 963, 1101, 1122
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 302, 418
BstNI	CCWGG	2 cut(s)	402, 899
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	3 cut(s)	400, 897, 925
BstSFI	CTRYAG	3 cut(s)	449, 852, 1008
BstSLI	GKGCMC	2 cut(s)	322, 938
BstV1I	GCAGC	2 cut(s)	453, 866
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	1 cut(s)	963
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	963
BsuRI	GGCC	5 cut(s)	92, 114, 197, 897, 903
BtgI	CCRYGG	1 cut(s)	944
BtsCI	GGATG	2 cut(s)	423, 456
BtsIMutI	CAGTG	1 cut(s)	936
Cac8I	GCNNGC	1 cut(s)	885
CaiI	CAGNNNCTG	2 cut(s)	48, 364
Cfr13I	GGNCC	1 cut(s)	901
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	283, 330
CviAII	CATG	6 cut(s)	17, 63, 193, 758, 868, 945
CviQI	GTAC	2 cut(s)	283, 330
DdeI	CTNAG	3 cut(s)	199, 958, 1062
DpnI	GATC	4 cut(s)	191, 965, 1103, 1124
DpnII	GATC	4 cut(s)	189, 963, 1101, 1122
Eam1104I	CTCTTC	4 cut(s)	222, 450, 541, 1164
EarI	CTCTTC	4 cut(s)	222, 450, 541, 1164
Eco130I	CCWWGG	2 cut(s)	393, 944
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	400, 897
EcoT14I	CCWWGG	2 cut(s)	393, 944
ErhI	CCWWGG	2 cut(s)	393, 944
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	6 cut(s)	20, 66, 196, 761, 871, 948
FaqI	GGGAC	4 cut(s)	418, 606, 875, 1127
FatI	CATG	6 cut(s)	16, 62, 192, 757, 867, 944
FauI	CCCGC	1 cut(s)	977
FauNDI	CATATG	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	467, 855
FokI	GGATG	2 cut(s)	430, 443
Fsp4HI	GCNGC	2 cut(s)	467, 855
GluI	GCNGC	2 cut(s)	467, 855
GsaI	CCCAGC	2 cut(s)	215, 1118
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	5 cut(s)	92, 114, 197, 897, 903
HapII	CCGG	2 cut(s)	843, 926
HgaI	GACGC	1 cut(s)	285
Hin1II	CATG	6 cut(s)	20, 66, 196, 761, 871, 948
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	3 cut(s)	29, 479, 1060
HpaII	CCGG	2 cut(s)	843, 926
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	1 cut(s)	955
Hpy188I	TCNGA	6 cut(s)	44, 292, 314, 500, 961, 1059
Hpy188III	TCNNGA	4 cut(s)	476, 827, 1090, 1099
Hpy8I	GTNNAC	1 cut(s)	955
HpyAV	CCTTC	5 cut(s)	103, 482, 655, 1057, 1120
HpyCH4III	ACNGT	6 cut(s)	50, 541, 607, 620, 940, 1044
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	8 cut(s)	145, 431, 451, 731, 854, 867, 887, 1040
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 302, 418
HpyF3I	CTNAG	3 cut(s)	199, 958, 1062
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	6 cut(s)	20, 66, 196, 761, 871, 948
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	4 cut(s)	189, 963, 1101, 1122
LguI	GCTCTTC	2 cut(s)	222, 450
LmnI	GCTCC	5 cut(s)	208, 280, 403, 474, 656
Lsp1109I	GCAGC	2 cut(s)	453, 866
LweI	GCATC	2 cut(s)	272, 408
MaeII	ACGT	1 cut(s)	487
MalI	GATC	4 cut(s)	191, 965, 1103, 1124
MboI	GATC	4 cut(s)	189, 963, 1101, 1122
MfeI	CAATTG	2 cut(s)	1068, 1164
MflI	RGATCY	1 cut(s)	963
MhlI	GDGCHC	2 cut(s)	322, 938
MluCI	AATT	8 cut(s)	105, 153, 379, 435, 507, 891, 1068, 1164
MlyI	GAGTC	1 cut(s)	1054
MmeI	TCCRAC	2 cut(s)	223, 235
MseI	TTAA	2 cut(s)	152, 974
MslI	CAYNNNNRTG	2 cut(s)	461, 872
MspI	CCGG	2 cut(s)	843, 926
MspR9I	CCNGG	3 cut(s)	402, 899, 927
MunI	CAATTG	2 cut(s)	1068, 1164
MvaI	CCWGG	2 cut(s)	402, 899
MwoI	GCNNNNNNNGC	3 cut(s)	98, 302, 418
NciI	CCSGG	1 cut(s)	927
NcoI	CCATGG	1 cut(s)	944
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	4 cut(s)	189, 963, 1101, 1122
NlaIII	CATG	6 cut(s)	20, 66, 196, 761, 871, 948
NlaIV	GGNNCC	4 cut(s)	319, 388, 399, 652
NspI	RCATGY	1 cut(s)	20
PciI	ACATGT	1 cut(s)	16
PciSI	GCTCTTC	2 cut(s)	222, 450
PfeI	GAWTC	2 cut(s)	29, 479
PfoI	TCCNGGA	1 cut(s)	925
PkrI	GCNGC	2 cut(s)	468, 856
PleI	GAGTC	1 cut(s)	1054
PpsI	GAGTC	1 cut(s)	1054
PscI	ACATGT	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	400, 897
PspFI	CCCAGC	2 cut(s)	211, 1114
PspGI	CCWGG	2 cut(s)	400, 897
PspN4I	GGNNCC	4 cut(s)	319, 388, 399, 652
PspPI	GGNCC	1 cut(s)	901
PstI	CTGCAG	2 cut(s)	453, 856
PstNI	CAGNNNCTG	2 cut(s)	48, 364
PsuI	RGATCY	1 cut(s)	963
RsaI	GTAC	2 cut(s)	284, 331
RsaNI	GTAC	2 cut(s)	283, 330
RseI	CAYNNNNRTG	2 cut(s)	461, 872
SapI	GCTCTTC	2 cut(s)	222, 450
SaqAI	TTAA	2 cut(s)	152, 974
SatI	GCNGC	2 cut(s)	467, 855
Sau3AI	GATC	4 cut(s)	189, 963, 1101, 1122
Sau96I	GGNCC	1 cut(s)	901
SchI	GAGTC	1 cut(s)	1054
ScrFI	CCNGG	3 cut(s)	402, 899, 927
SduI	GDGCHC	2 cut(s)	322, 938
SfaNI	GCATC	2 cut(s)	272, 408
SfcI	CTRYAG	3 cut(s)	449, 852, 1008
SmiMI	CAYNNNNRTG	2 cut(s)	461, 872
Sse9I	AATT	8 cut(s)	105, 153, 379, 435, 507, 891, 1068, 1164
SsiI	CCGC	2 cut(s)	412, 984
StyD4I	CCNGG	3 cut(s)	400, 897, 925
StyI	CCWWGG	2 cut(s)	393, 944
TaaI	ACNGT	6 cut(s)	50, 541, 607, 620, 940, 1044
TaiI	ACGT	1 cut(s)	490
TasI	AATT	8 cut(s)	105, 153, 379, 435, 507, 891, 1068, 1164
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	29, 479
Tru1I	TTAA	2 cut(s)	152, 974
Tru9I	TTAA	2 cut(s)	152, 974
TscAI	CASTG	1 cut(s)	943
TseI	GCWGC	2 cut(s)	466, 854
TspDTI	ATGAA	5 cut(s)	21, 166, 445, 661, 884
TspRI	CASTG	1 cut(s)	943
XapI	RAATTY	1 cut(s)	435
XceI	RCATGY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.