Rh5BG110700
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
10373350 .. 10373931
582 bp
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UTR
Exon/CDS
Intron
Rh5BG110700.1

Sequence Viewer

Length: 582 bp
ATGCTGAGGAAATTATACTCAGCTGATGAGGTTGAAATAGAAATCCAAGCATTGAAGGAGTCATTAGAAACTGAGCTTCATCAAGTAGGGTCTTCCCAGAAAATTAGCATTGTTGAACTTTTGAGAACGAAAACGGTGCGAAGAGGACTAATGGCTGGTGCTGGCCTTCAATTCTTCCAGCAGTTTGTGGGAATAAATACGGTGATGTATTACAGTCCCACCATAGTTCAGTTGGCAGGCTTTGCATCAAATCAAACGGCGCTGCTTCTCTCACTTGTAACTGCTAGTCTCAATGCATCCGGCTCCATTGTGAGCATATACTTCATTGACAGAACTGGGAGGAAGAAGCTTCTAATCATCAGTTTGCTTGGAGTTATTATTGCACTTGGTCTTTTATCAACAGTTTTCCATGACACTACTTCTCATTCGCCTCTCATAAGCCCAATTGAAACATCTCATTTCACAAGCTACACCTGTCCAGATTATAGTTCAGCCGGAAACTCTGCAGCTTGGGACTGCATGAAGTGTTTGAAGTCTTCATCTCCGGACTGTGGCCTGTGGGTTCTGTGCTTCGAAGGCTGA

Protein Analysis

193

Amino Acids

21.01

Weight (kDa)

6.41

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 2 - 143 1.5e-27 Sugar (and other) transporter
MFS_1 PF07690 51 - 145 1.3e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017052)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 544
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 6 cut(s) 35, 55, 116, 170, 449, 532
AluBI AGCT 5 cut(s) 23, 76, 349, 468, 509
AluI AGCT 5 cut(s) 23, 76, 349, 468, 509
Alw26I GTCTC 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 544
AoxI GGCC 2 cut(s) 163, 553
ApeKI GCWGC 2 cut(s) 262, 506
AspLEI GCGC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 573
BbsI GAAGAC 2 cut(s) 84, 528
BbvCI CCTCAGC 1 cut(s) 5
BbvI GCAGC 2 cut(s) 249, 518
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 263
BisI GCNGC 2 cut(s) 263, 507
BlsI GCNGC 2 cut(s) 264, 508
BmiI GGNNCC 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 2 cut(s) 254, 305
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 2 cut(s) 84, 528
Bpu10I CCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 573
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 1 cut(s) 340
BseAI TCCGGA 1 cut(s) 544
BseGI GGATG 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMII CTCAG 2 cut(s) 33, 63
BseNI ACTGG 1 cut(s) 340
BseXI GCAGC 2 cut(s) 249, 518
BshFI GGCC 2 cut(s) 165, 555
BsiSI CCGG 3 cut(s) 300, 495, 545
BslFI GGGAC 2 cut(s) 201, 527
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 2 cut(s) 201, 527
BsnI GGCC 2 cut(s) 165, 555
Bsp119I TTCGAA 1 cut(s) 573
Bsp13I TCCGGA 1 cut(s) 544
BspANI GGCC 2 cut(s) 165, 555
BspCNI CTCAG 2 cut(s) 32, 64
BspEI TCCGGA 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 508
BspT104I TTCGAA 1 cut(s) 573
BsrI ACTGG 1 cut(s) 340
Bst4CI ACNGT 5 cut(s) 136, 202, 215, 403, 551
Bst6I CTCTTC 1 cut(s) 136
BstAPI GCANNNNNTGC 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 163, 238
BstDEI CTNAG 3 cut(s) 5, 19, 72
BstF5I GGATG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 293
BstMWI GCNNNNNNNGC 2 cut(s) 242, 576
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 249, 518
BstV2I GAAGAC 2 cut(s) 84, 528
BsuRI GGCC 2 cut(s) 165, 555
BtsCI GGATG 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 163, 238
CfoI GCGC 1 cut(s) 262
CviAII CATG 2 cut(s) 410, 520
DdeI CTNAG 3 cut(s) 5, 19, 72
Eam1104I CTCTTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 298
FaeI CATG 2 cut(s) 413, 523
FaiI YATR 8 cut(s) 16, 224, 317, 319, 411, 437, 486, 521
FaqI GGGAC 2 cut(s) 201, 527
FatI CATG 2 cut(s) 409, 519
Fnu4HI GCNGC 2 cut(s) 263, 507
FokI GGATG 1 cut(s) 283
Fsp4HI GCNGC 2 cut(s) 263, 507
FspBI CTAG 1 cut(s) 285
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 263, 507
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 2 cut(s) 165, 555
HapII CCGG 3 cut(s) 300, 495, 545
HhaI GCGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 413, 523
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 1 cut(s) 59
HpaII CCGG 3 cut(s) 300, 495, 545
HphI GGTGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 479, 545
HpyAV CCTTC 3 cut(s) 49, 176, 569
HpyCH4III ACNGT 5 cut(s) 136, 202, 215, 403, 551
HpyCH4V TGCA 5 cut(s) 245, 296, 383, 506, 519
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 576
HpyF3I CTNAG 3 cut(s) 5, 19, 72
Hsp92II CATG 2 cut(s) 413, 523
HspAI GCGC 1 cut(s) 260
Kpn2I TCCGGA 1 cut(s) 544
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 2 cut(s) 249, 518
LweI GCATC 2 cut(s) 254, 305
MaeI CTAG 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 277
MboII GAAGA 5 cut(s) 84, 153, 166, 355, 528
MfeI CAATTG 1 cut(s) 444
MluCI AATT 4 cut(s) 11, 102, 170, 444
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 4 cut(s) 22, 137, 333, 441
Mph1103I ATGCAT 1 cut(s) 298
MroI TCCGGA 1 cut(s) 544
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 3 cut(s) 300, 495, 545
MunI CAATTG 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 242, 576
NlaIII CATG 2 cut(s) 413, 523
NlaIV GGNNCC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 298
NspV TTCGAA 1 cut(s) 573
PkrI GCNGC 2 cut(s) 264, 508
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 304
PstI CTGCAG 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 23
SatI GCNGC 2 cut(s) 263, 507
SchI GAGTC 1 cut(s) 68
SetI ASST 7 cut(s) 25, 33, 78, 351, 470, 476, 511
SfaNI GCATC 2 cut(s) 254, 305
SfcI CTRYAG 1 cut(s) 504
SfuI TTCGAA 1 cut(s) 573
Sse9I AATT 4 cut(s) 11, 102, 170, 444
SspMI CTAG 1 cut(s) 285
TaaI ACNGT 5 cut(s) 136, 202, 215, 403, 551
TaqI TCGA 1 cut(s) 573
TasI AATT 4 cut(s) 11, 102, 170, 444
TseI GCWGC 2 cut(s) 262, 506
TspDTI ATGAA 4 cut(s) 68, 313, 528, 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XspI CTAG 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.