Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017052

Physical Location & Seq

Genomic Coordinates Forward (+)

1248524 .. 1249195

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0018700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAAATGATAGTATCCAAAATTGTGTTCACCCTAATCTTCGTGTTGTTGGGTATAGCCATTGCCCATTCAGCAACACCAACTGTCGAAGAGGAGCCCCAACTCAACCTTAACGAGCTTTCATCCGCAATGGCATCTCTGCGAGGGATTGGTGGCCGGTTCCTTGCGGAGCAAGTACGAGCCGCACCGACCACATGTGACAAGAATCCGACAGTCTGTAAGAGCAAGGGCAGTGCAGGGCCTAACTGCTGCAGCAAAAATTGCGTCAATGTAACGACGGATACAAACAATTGCGGGCGGTGTGGAGTGAAGTGTAAGTACTCGGAACTCTGCTGCAACGGTGTTTGTGTGAACCCGTCTGTCAATGGCAAACATTGTGGCAAGTGCGGCAACAAGTGTGGAAAAGGAAGCTCATGCTTGTATGGCCTGTGCAGCTATGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

148

Amino Acids

15.48

Weight (kDa)

8.59

Isoelectric Point (pI)

19.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stig1	PF04885	64 - 147	3.2e-28	Stigma-specific STIG1-like protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30220
prunus_persica	Prupe.4G083700_v2.0.a1 Prupe.4G083700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014501
rosa_laevigata	RLG00000032118
rosa_roxburghii	Rroxscaffold_1G00062030
rosa_rugosa	Rorug05G0018600 Rorug05G0018700
rosa_samantha	Rh5AG114000 Rh5BG110700 Rh5BG110900 Rh5CG122500
rosa_wichuraiana	Rw5G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	126, 167, 183, 294, 298, 387
AcoI	YGGCCR	1 cut(s)	154
AfaI	GTAC	2 cut(s)	177, 320
AflIII	ACRYGT	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	3 cut(s)	118, 411, 435
AluI	AGCT	3 cut(s)	118, 411, 435
AoxI	GGCC	3 cut(s)	154, 239, 424
ApeKI	GCWGC	4 cut(s)	249, 252, 333, 432
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BbvI	GCAGC	3 cut(s)	236, 264, 320
BciVI	GTATCC	2 cut(s)	25, 274
BfmI	CTRYAG	1 cut(s)	250
BfuI	GTATCC	2 cut(s)	25, 274
BisI	GCNGC	6 cut(s)	183, 250, 253, 334, 388, 433
BlsI	GCNGC	6 cut(s)	184, 251, 254, 335, 389, 434
BmcAI	AGTACT	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	96, 161
BmsI	GCATC	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	156
Bse3DI	GCAATG	2 cut(s)	60, 135
BseGI	GGATG	1 cut(s)	122
BseMI	GCAATG	2 cut(s)	60, 135
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	236, 264, 320
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	156, 241, 426
BsiSI	CCGG	1 cut(s)	157
BsnI	GGCC	3 cut(s)	156, 241, 426
Bsp1286I	GDGCHC	1 cut(s)	99
BspACI	CCGC	6 cut(s)	126, 167, 183, 294, 298, 387
BspANI	GGCC	3 cut(s)	156, 241, 426
BspLI	GGNNCC	2 cut(s)	96, 161
BspMAI	CTGCAG	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	60, 135
BsrFI	RCCGGY	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	85, 214, 341
Bst6I	CTCTTC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 261, 387, 423, 432
BstNSI	RCATGY	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	236, 264, 320
BsuI	GTATCC	2 cut(s)	25, 274
BsuRI	GGCC	3 cut(s)	156, 241, 426
BtsCI	GGATG	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	239
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	176, 319
CspCI	CAANNNNNGTGG	4 cut(s)	358, 379, 393, 414
CviAII	CATG	2 cut(s)	195, 414
CviJI	RGCY	9 cut(s)	59, 97, 118, 156, 182, 241, 411, 426, 435
CviKI_1	RGCY	9 cut(s)	59, 97, 118, 156, 182, 241, 411, 426, 435
CviQI	GTAC	2 cut(s)	176, 319
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	2 cut(s)	198, 417
FaiI	YATR	5 cut(s)	56, 196, 415, 423, 438
FatI	CATG	2 cut(s)	194, 413
FauI	CCCGC	1 cut(s)	287
Fnu4HI	GCNGC	6 cut(s)	183, 250, 253, 334, 388, 433
FokI	GGATG	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	6 cut(s)	183, 250, 253, 334, 388, 433
GluI	GCNGC	6 cut(s)	183, 250, 253, 334, 388, 433
HaeIII	GGCC	3 cut(s)	156, 241, 426
HapII	CCGG	1 cut(s)	157
HgaI	GACGC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	198, 417
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	30, 352
Hpy188I	TCNGA	2 cut(s)	210, 325
Hpy8I	GTNNAC	2 cut(s)	30, 352
Hpy99I	CGWCG	1 cut(s)	280
HpyCH4III	ACNGT	3 cut(s)	85, 214, 341
HpyCH4V	TGCA	4 cut(s)	236, 252, 336, 432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 261, 387, 423, 432
Hsp92II	CATG	2 cut(s)	198, 417
LmnI	GCTCC	2 cut(s)	94, 169
LpnPI	CCDG	3 cut(s)	170, 222, 440
Lsp1109I	GCAGC	3 cut(s)	236, 264, 320
LweI	GCATC	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	197, 271
MboII	GAAGA	2 cut(s)	31, 101
MfeI	CAATTG	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	4 cut(s)	21, 259, 289, 442
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	2 cut(s)	85, 137
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	289
MwoI	GCNNNNNNNGC	5 cut(s)	71, 261, 387, 423, 432
NlaIII	CATG	2 cut(s)	198, 417
NlaIV	GGNNCC	2 cut(s)	96, 161
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	198
PciI	ACATGT	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	6 cut(s)	184, 251, 254, 335, 389, 434
PscI	ACATGT	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	96, 161
PspPI	GGNCC	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	177, 320
RsaNI	GTAC	2 cut(s)	176, 319
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	6 cut(s)	183, 250, 253, 334, 388, 433
Sau96I	GGNCC	1 cut(s)	239
ScaI	AGTACT	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	4 cut(s)	111, 120, 413, 437
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	250
Sse9I	AATT	4 cut(s)	21, 259, 289, 442
SsiI	CCGC	6 cut(s)	126, 167, 183, 294, 298, 387
TaaI	ACNGT	3 cut(s)	85, 214, 341
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	21, 259, 289, 442
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	2 cut(s)	185, 390
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	4 cut(s)	249, 252, 333, 432
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	111
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	238
XceI	RCATGY	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.