Rh5BG110900
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
10378920 .. 10379347
428 bp
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UTR
Exon/CDS
Intron
Rh5BG110900.1

Sequence Viewer

Length: 234 bp
ATGGAGGGAGGACTACATGTAGAGGCAGATTCATCAGCTTTCAGAGACTGTTTCTCTTTGGCATGGAAGAACCCATATTTTCTTCGTCTGGCCTTCTCTGCTGGAATTGGTGGCCTCCTCTTTGGCTATGACACAGGAGTTATATCAGGAGCTCTTCTTTACATCAGGGATGACTTCAAGTCTGTGGACAGAGAGACTGTCTTACAGATAATAAGAGCTACACATGGCACATAG

Protein Analysis

77

Amino Acids

8.46

Weight (kDa)

5.47

Isoelectric Point (pI)

11.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017052)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 178
AhdI GACNNNNNGTC 1 cut(s) 178
AluBI AGCT 3 cut(s) 38, 152, 218
AluI AGCT 3 cut(s) 38, 152, 218
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 39, 188
AlwNI CAGNNNCTG 1 cut(s) 48
AoxI GGCC 2 cut(s) 90, 112
BanII GRGCYC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 39, 188
BmeRI GACNNNNNGTC 1 cut(s) 178
BseGI GGATG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 107
BshFI GGCC 2 cut(s) 92, 114
BsiHKAI GWGCWC 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 39, 188
BsnI GGCC 2 cut(s) 92, 114
Bsp1286I GDGCHC 1 cut(s) 154
BspANI GGCC 2 cut(s) 92, 114
BspQI GCTCTTC 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 50, 199
Bst6I CTCTTC 1 cut(s) 159
BstF5I GGATG 1 cut(s) 175
BstMAI GTCTC 2 cut(s) 39, 188
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 20
BsuRI GGCC 2 cut(s) 92, 114
BtsCI GGATG 1 cut(s) 175
CaiI CAGNNNCTG 1 cut(s) 48
CviAII CATG 3 cut(s) 17, 63, 224
CviJI RGCY 6 cut(s) 38, 92, 114, 126, 152, 218
CviKI_1 RGCY 6 cut(s) 38, 92, 114, 126, 152, 218
DriI GACNNNNNGTC 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 159
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 154
FaeI CATG 3 cut(s) 20, 66, 227
FaiI YATR 7 cut(s) 18, 64, 76, 129, 143, 225, 232
FatI CATG 3 cut(s) 16, 62, 223
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 154
HaeIII GGCC 2 cut(s) 92, 114
Hin1II CATG 3 cut(s) 20, 66, 227
HinfI GANTC 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 147
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 50, 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
Hsp92II CATG 3 cut(s) 20, 66, 227
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 5 cut(s) 74, 87, 120, 132, 151
MboII GAAGA 3 cut(s) 74, 79, 146
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 105
MnlI CCTC 3 cut(s) 16, 125, 128
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIII CATG 3 cut(s) 20, 66, 227
NspI RCATGY 1 cut(s) 20
PciI ACATGT 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 29
PscI ACATGT 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 48
SacI GAGCTC 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 159
SduI GDGCHC 1 cut(s) 154
SetI ASST 3 cut(s) 40, 154, 220
SgeI CNNG 8 cut(s) 29, 75, 101, 114, 147, 159, 178, 190
Sse9I AATT 1 cut(s) 105
SstI GAGCTC 1 cut(s) 154
TaaI ACNGT 2 cut(s) 50, 199
TasI AATT 1 cut(s) 105
TfiI GAWTC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 21
XceI RCATGY 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.