Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017052

Physical Location & Seq

Genomic Coordinates Reverse (-)

10177043 .. 10181245

Gene Structure 4203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG122500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGGGAGGACTACATGTAGAGGCAGATTCATCAGCTTTCAGAGACTGTTTCTCTTTGGCATGGAAGAACCCATATGTTCTTCGTCTGGCCTTCTCTGCTGGAATTGGTGGCCTCCTCTTTGGCTATGACACAGGAGTTATATCAGGAGCTCTTCTTTACATCAGGGATGACTTCCAAGTCTGTGGACAGAGAGACTGTCTTACAGATTATAGTTCAGCCGGAAACTCTGCAGCTTGGGACTGCATGAAGTGTTTGAAGTCTTCATCTCCGGACTGTGGGTTCTGTGCTTCAAAGGTTGATAAGCTACTTCCGAGAGCTTGTTTGATCTCAAATGATACAACAAAGGATAGTTGCCATGGAGAAGACAGGTTGTGGTACACAAGGGGATGTCCAAGCAAGTATGGTTTGGCTTGCACTAATTGGCCTGGCCCTTTACATCACATTTTTTTCTCCGGGAATGGGCATTGTGCAATGGATTGTCAACTAAGAGATCTATCCTTTAAGGCAATTGGAACTTCTTGGACATTCCTGATATTCGGGATCATTTCCTTTCCGGCCTTGATCTTTGTCCTCATTTTCGTCCCAGAAACCGAGGGGCTTCCAATTGAAGAGTTTGAGAAGATGCTAGAGCTGAGGGCTTTGCACTTCAAGTTCTGGGAAAAAGGCCCAAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

226

Amino Acids

25.11

Weight (kDa)

5.85

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30220
prunus_persica	Prupe.4G083700_v2.0.a1 Prupe.4G083700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014501
rosa_laevigata	RLG00000032118
rosa_roxburghii	Rroxscaffold_1G00062030
rosa_rugosa	Rorug05G0018600 Rorug05G0018700
rosa_samantha	Rh5AG114000 Rh5BG110700 Rh5BG110900 Rh5CG122500
rosa_wichuraiana	Rw5G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	271
AclWI	GGATC	1 cut(s)	551
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	278, 462
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	259, 294, 611, 652
AjnI	CCWGG	1 cut(s)	427
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	6 cut(s)	38, 152, 236, 307, 320, 634
AluI	AGCT	6 cut(s)	38, 152, 236, 307, 320, 634
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	39, 189
AlwI	GGATC	1 cut(s)	551
AlwNI	CAGNNNCTG	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	271
AoxI	GGCC	6 cut(s)	90, 112, 425, 430, 558, 667
ApeKI	GCWGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	431, 668
AsuC2I	CCSGG	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	2 cut(s)	255, 372
Bbv12I	GWGCWC	1 cut(s)	154
BbvCI	CCTCAGC	1 cut(s)	635
BbvI	GCAGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	39, 189
BfaI	CTAG	2 cut(s)	629, 679
BfmI	CTRYAG	1 cut(s)	231
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	429, 457
BmgT120I	GGNCC	2 cut(s)	431, 668
BmrFI	CCNGG	2 cut(s)	429, 457
BmsI	GCATC	1 cut(s)	615
BpiI	GAAGAC	2 cut(s)	255, 372
Bpu10I	CCTNAGC	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	457
BsaJI	CCNNGG	2 cut(s)	358, 594
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 462
Bse3DI	GCAATG	1 cut(s)	480
BseAI	TCCGGA	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	358, 594
BseGI	GGATG	2 cut(s)	175, 395
BseLI	CCNNNNNNNGG	2 cut(s)	278, 462
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	245
BshFI	GGCC	6 cut(s)	92, 114, 427, 432, 560, 669
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	4 cut(s)	222, 272, 456, 557
BslFI	GGGAC	2 cut(s)	254, 569
BslI	CCNNNNNNNGG	2 cut(s)	278, 462
BsmAI	GTCTC	2 cut(s)	39, 189
BsmFI	GGGAC	2 cut(s)	254, 569
BsnI	GGCC	6 cut(s)	92, 114, 427, 432, 560, 669
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp13I	TCCGGA	1 cut(s)	271
Bsp143I	GATC	4 cut(s)	327, 493, 543, 564
Bsp19I	CCATGG	1 cut(s)	358
BspANI	GGCC	6 cut(s)	92, 114, 427, 432, 560, 669
BspCNI	CTCAG	1 cut(s)	627
BspEI	TCCGGA	1 cut(s)	271
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	1 cut(s)	551
BspQI	GCTCTTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	480
BssECI	CCNNGG	2 cut(s)	358, 594
BssMI	GATC	4 cut(s)	327, 493, 543, 564
BssT1I	CCWWGG	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	50, 200, 278
Bst6I	CTCTTC	2 cut(s)	159, 606
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	2 cut(s)	488, 635
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	175, 395
BstKTI	GATC	4 cut(s)	330, 496, 546, 567
BstMAI	GTCTC	2 cut(s)	39, 189
BstMBI	GATC	4 cut(s)	327, 493, 543, 564
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	2 cut(s)	427, 455
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	2 cut(s)	255, 372
BstX2I	RGATCY	1 cut(s)	493
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	6 cut(s)	92, 114, 427, 432, 560, 669
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	175, 395
Cac8I	GCNNGC	1 cut(s)	415
CaiI	CAGNNNCTG	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	431, 668
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	4 cut(s)	17, 63, 247, 359
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	488, 635
DpnI	GATC	4 cut(s)	329, 495, 545, 566
DpnII	GATC	4 cut(s)	327, 493, 543, 564
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	2 cut(s)	159, 606
EarI	CTCTTC	2 cut(s)	159, 606
Ecl136II	GAGCTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	4 cut(s)	20, 66, 250, 362
FaqI	GGGAC	2 cut(s)	254, 569
FatI	CATG	4 cut(s)	16, 62, 246, 358
FauNDI	CATATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	2 cut(s)	182, 402
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	629, 679
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	6 cut(s)	92, 114, 427, 432, 560, 669
HapII	CCGG	4 cut(s)	222, 272, 456, 557
Hin1II	CATG	4 cut(s)	20, 66, 250, 362
HincII	GTYRAC	1 cut(s)	485
HindII	GTYRAC	1 cut(s)	485
HinfI	GANTC	2 cut(s)	29, 675
HpaII	CCGG	4 cut(s)	222, 272, 456, 557
Hpy166II	GTNNAC	3 cut(s)	188, 381, 485
Hpy188I	TCNGA	2 cut(s)	44, 315
Hpy188III	TCNNGA	4 cut(s)	147, 272, 532, 541
Hpy8I	GTNNAC	3 cut(s)	188, 381, 485
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	3 cut(s)	50, 200, 278
HpyCH4V	TGCA	5 cut(s)	233, 246, 417, 473, 646
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	488, 635
Hsp92II	CATG	4 cut(s)	20, 66, 250, 362
Kpn2I	TCCGGA	1 cut(s)	271
Kzo9I	GATC	4 cut(s)	327, 493, 543, 564
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	2 cut(s)	629, 679
MalI	GATC	4 cut(s)	329, 495, 545, 566
MboI	GATC	4 cut(s)	327, 493, 543, 564
MboII	GAAGA	7 cut(s)	74, 79, 146, 255, 377, 623, 634
MfeI	CAATTG	2 cut(s)	510, 606
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	4 cut(s)	105, 421, 510, 606
MlyI	GAGTC	1 cut(s)	669
MnlI	CCTC	6 cut(s)	16, 125, 128, 584, 589, 630
MroI	TCCGGA	1 cut(s)	271
MseI	TTAA	1 cut(s)	504
MspI	CCGG	4 cut(s)	222, 272, 456, 557
MspR9I	CCNGG	2 cut(s)	429, 457
MunI	CAATTG	2 cut(s)	510, 606
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	457
NcoI	CCATGG	1 cut(s)	358
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	4 cut(s)	327, 493, 543, 564
NlaIII	CATG	4 cut(s)	20, 66, 250, 362
NspI	RCATGY	1 cut(s)	20
PciI	ACATGT	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	669
PpsI	GAGTC	1 cut(s)	669
PscI	ACATGT	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspPI	GGNCC	2 cut(s)	431, 668
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SacI	GAGCTC	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	4 cut(s)	327, 493, 543, 564
Sau96I	GGNCC	2 cut(s)	431, 668
SchI	GAGTC	1 cut(s)	669
ScrFI	CCNGG	2 cut(s)	429, 457
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	8 cut(s)	40, 154, 238, 300, 309, 322, 374, 636
SfaNI	GCATC	1 cut(s)	615
SfcI	CTRYAG	1 cut(s)	231
Sse9I	AATT	4 cut(s)	105, 421, 510, 606
SspMI	CTAG	2 cut(s)	629, 679
SstI	GAGCTC	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	427, 455
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	3 cut(s)	50, 200, 278
TasI	AATT	4 cut(s)	105, 421, 510, 606
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	21, 255, 263
XceI	RCATGY	1 cut(s)	20
XspI	CTAG	2 cut(s)	629, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.