Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017052

Physical Location & Seq

Genomic Coordinates Reverse (-)

10531789 .. 10532836

Gene Structure 1048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG114000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAGGGAGGACTACATGTAGAGGCAGATTCATCAGCTTTCAGAGACTGTTTCTCTTTGGCACGGAAGAACCCATATGTTCTTCGTCTGGCCTTCTCTGCTGGAATTGGTGGCCTCCTCTTTGGCTATGACACAGGAGTTATATCAGGAGCTCTTCTTTACATCAGGGATGACTTCAAGTCTGTGGACAGAGAGACTGTCTTACAGGAGAGCATAGTGAGCATGGCAGTGGCCGGAGCCATCATTGGAGCTGCAATAGGGGGATGGTTGAACGTACGATCGGTATGGAAGAAGAAGTGCAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

102

Amino Acids

10.94

Weight (kDa)

7.78

Isoelectric Point (pI)

23.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	31 - 91	8e-08	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30220
prunus_persica	Prupe.4G083700_v2.0.a1 Prupe.4G083700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014501
rosa_laevigata	RLG00000032118
rosa_roxburghii	Rroxscaffold_1G00062030
rosa_rugosa	Rorug05G0018600 Rorug05G0018700
rosa_samantha	Rh5AG114000 Rh5BG110700 Rh5BG110900 Rh5CG122500
rosa_wichuraiana	Rw5G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	231
AfaI	GTAC	1 cut(s)	276
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	178, 271
AhdI	GACNNNNNGTC	1 cut(s)	178
AluBI	AGCT	3 cut(s)	38, 152, 251
AluI	AGCT	3 cut(s)	38, 152, 251
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	39, 188
AlwNI	CAGNNNCTG	1 cut(s)	48
AoxI	GGCC	3 cut(s)	90, 112, 231
ApeKI	GCWGC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	248, 258
BcoDI	GTCTC	2 cut(s)	39, 188
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	238
BseGI	GGATG	2 cut(s)	175, 269
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	281
BshFI	GGCC	3 cut(s)	92, 114, 233
BsiEI	CGRYCG	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	234
BsiWI	CGTACG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	39, 188
BsnI	GGCC	3 cut(s)	92, 114, 233
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	278
BspANI	GGCC	3 cut(s)	92, 114, 233
BspLI	GGNNCC	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	159
BssMI	GATC	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	50, 199
Bst6I	CTCTTC	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	175, 269
BstKTI	GATC	1 cut(s)	281
BstMAI	GTCTC	2 cut(s)	39, 188
BstMBI	GATC	1 cut(s)	278
BstMCI	CGRYCG	1 cut(s)	281
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 219
BstNSI	RCATGY	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	92, 114, 233
BtsCI	GGATG	2 cut(s)	175, 269
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	2 cut(s)	17, 223
CviJI	RGCY	8 cut(s)	38, 92, 114, 126, 152, 233, 239, 251
CviKI_1	RGCY	8 cut(s)	38, 92, 114, 126, 152, 233, 239, 251
CviQI	GTAC	1 cut(s)	275
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
DriI	GACNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	159
Eam1105I	GACNNNNNGTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	2 cut(s)	20, 226
FaiI	YATR	8 cut(s)	18, 76, 78, 129, 143, 215, 224, 286
FatI	CATG	2 cut(s)	16, 222
FauNDI	CATATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	2 cut(s)	182, 276
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	3 cut(s)	92, 114, 233
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	2 cut(s)	20, 226
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	50, 199
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	254, 300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 219
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	20, 226
Kzo9I	GATC	1 cut(s)	278
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	3 cut(s)	149, 236, 248
LpnPI	CCDG	7 cut(s)	74, 87, 120, 132, 151, 191, 247
Lsp1109I	GCAGC	1 cut(s)	238
MaeII	ACGT	1 cut(s)	273
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	5 cut(s)	74, 79, 146, 301, 304
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	1 cut(s)	105
MnlI	CCTC	3 cut(s)	16, 125, 128
MseI	TTAA	1 cut(s)	307
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	98, 219
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	20, 226
NlaIV	GGNNCC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	20
PciI	ACATGT	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	29
Pfl23II	CGTACG	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	253
Ple19I	CGATCG	1 cut(s)	281
PscI	ACATGT	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	154
PspLI	CGTACG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	48
PvuI	CGATCG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	4 cut(s)	40, 154, 253, 276
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	50, 199
TaiI	ACGT	1 cut(s)	276
TasI	AATT	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	234
XceI	RCATGY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.