Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017052

Physical Location & Seq

Genomic Coordinates Reverse (-)

11146629 .. 11148577

Gene Structure 1949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGACAAATATGCAGGAGTTATATCAGGAGCTCTTCTTTACATAAGGGATGACTTCAAGTCTCTGGACAGAGAGACTGTCTTACAGGCCCTGGGGACTTGCCGGTGGATGCTTGGTGTTGCAGGAATTCCAGCTCTTCTGCAGTTCATCCTAATGCTGCTTCCTCCAGAATCTCCACGTTGGCTATTCCGAAAGGGGAGGGAAGAAGAAGCAAAAACCATACTGAGGAAATTATACTCAGCTGATGAGGTTGAAATAGAAATCAGAGCATTGAAGGAGTCATTAGAAACTGAGCTTCATCAAGTAGGGCCTTCCCAGAAAATTAGCATTGTTGAGCTTTTGAGAACGAAAACGTTTGTGGGAATGAATAGGGTGATGTATTACAGTCCCACCATAGTTCAGTTGGCAGGCTTTGCATCAAATCAAACGGCGCTGCTTCTCTCACTTGTAACTGCTAGTCTCAATGCCTGCGGCTCCATTGTGAGCATATACTTCATTGACAGAACTGGGAGGAAGAAGCTTCTAATCATCAGTTTGCTTGGAGTTATTATTGCACTTGGTCTTTTATCAGCAGTTTTCCATGAGACTACTTCTCATCCGCCTCTCATAAGCCCGATTGAAACATCTCATTTCACAAACTACACCTGTCCAGATTATAGTTCAGTAGGAAACTCTGCAGCTTGGGACTGCATGAAGTGTTTGAAGTCTTCATCTCGGGACTGTGGGTTCTGTGCTTCAAAGGCTGATAAGCTACTTCCGGGAGCTTCTTTGATCTCAAATGATACAACAAAGGACAGTTGCCATGGAGACGAGTTGGCGACAGGTTGTGGTACACAAGGGGATGTCCAAGCAAGTATGGTTGGCTTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

291

Amino Acids

31.63

Weight (kDa)

6.59

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	34 - 192	2.5e-08	Major Facilitator Superfamily
Sugar_tr	PF00083	35 - 194	2e-33	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30220
prunus_persica	Prupe.4G083700_v2.0.a1 Prupe.4G083700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0014501
rosa_laevigata	RLG00000032118
rosa_roxburghii	Rroxscaffold_1G00062030
rosa_rugosa	Rorug05G0018600 Rorug05G0018700
rosa_samantha	Rh5AG114000 Rh5BG110700 Rh5BG110900 Rh5CG122500
rosa_wichuraiana	Rw5G009880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	471, 599
AclI	AACGTT	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	1 cut(s)	832
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	6 cut(s)	58, 254, 274, 620, 703, 738
AhdI	GACNNNNNGTC	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	90
AloI	GAACNNNNNNTCC	2 cut(s)	710, 742
AluBI	AGCT	9 cut(s)	32, 134, 242, 295, 337, 520, 680, 751, 764
AluI	AGCT	9 cut(s)	32, 134, 242, 295, 337, 520, 680, 751, 764
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	5 cut(s)	66, 68, 464, 578, 801
AlwNI	CAGNNNCTG	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	714
AoxI	GGCC	2 cut(s)	87, 308
ApeKI	GCWGC	3 cut(s)	157, 433, 677
ApoI	RAATTY	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	88, 308
AsuC2I	CCSGG	1 cut(s)	759
AsuHPI	GGTGA	1 cut(s)	385
AvaI	CYCGRG	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	144, 420, 689
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	759
BcoDI	GTCTC	5 cut(s)	66, 68, 464, 578, 801
BfaI	CTAG	1 cut(s)	456
BfmI	CTRYAG	2 cut(s)	140, 675
BfoI	RGCGCY	1 cut(s)	434
BisI	GCNGC	4 cut(s)	158, 434, 472, 678
BlsI	GCNGC	4 cut(s)	159, 435, 473, 679
Bme1390I	CCNGG	2 cut(s)	92, 759
BmeRI	GACNNNNNGTC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	714
BmgT120I	GGNCC	2 cut(s)	88, 308
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	2 cut(s)	92, 759
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	2 cut(s)	99, 425
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	759
BsaJI	CCNNGG	3 cut(s)	90, 91, 802
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	3 cut(s)	90, 91, 802
BseGI	GGATG	5 cut(s)	55, 114, 147, 595, 847
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	215, 252, 282
BseNI	ACTGG	1 cut(s)	511
BseXI	GCAGC	3 cut(s)	144, 420, 689
BshFI	GGCC	2 cut(s)	89, 310
BsiHKAI	GWGCWC	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	103, 758
BslFI	GGGAC	4 cut(s)	109, 372, 698, 731
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	5 cut(s)	66, 68, 464, 578, 801
BsmBI	CGTCTC	1 cut(s)	801
BsmFI	GGGAC	4 cut(s)	109, 372, 698, 731
BsnI	GGCC	2 cut(s)	89, 310
BsoBI	CYCGRG	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	771
Bsp19I	CCATGG	1 cut(s)	802
BspACI	CCGC	2 cut(s)	471, 599
BspANI	GGCC	2 cut(s)	89, 310
BspCNI	CTCAG	3 cut(s)	216, 251, 283
BspLI	GGNNCC	1 cut(s)	475
BspMAI	CTGCAG	2 cut(s)	144, 679
BspQI	GCTCTTC	2 cut(s)	39, 141
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	511
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	3 cut(s)	90, 91, 802
BssMI	GATC	1 cut(s)	771
BssT1I	CCWWGG	1 cut(s)	802
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	4 cut(s)	79, 386, 722, 797
Bst6I	CTCTTC	2 cut(s)	39, 141
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	409, 469, 866
BstDEI	CTNAG	3 cut(s)	224, 238, 291
BstDSI	CCRYGG	1 cut(s)	802
BstF5I	GGATG	5 cut(s)	55, 114, 147, 595, 847
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	1 cut(s)	774
BstMAI	GTCTC	5 cut(s)	66, 68, 464, 578, 801
BstMBI	GATC	1 cut(s)	771
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 740
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	90, 757
BstSFI	CTRYAG	2 cut(s)	140, 675
BstV1I	GCAGC	3 cut(s)	144, 420, 689
BstV2I	GAAGAC	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	89, 310
BtgI	CCRYGG	1 cut(s)	802
BtsCI	GGATG	5 cut(s)	55, 114, 147, 595, 847
Cac8I	GCNNGC	3 cut(s)	409, 469, 866
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	88, 308
Csp6I	GTAC	1 cut(s)	831
CviAII	CATG	3 cut(s)	581, 691, 803
CviQI	GTAC	1 cut(s)	831
DdeI	CTNAG	3 cut(s)	224, 238, 291
DpnI	GATC	1 cut(s)	773
DpnII	GATC	1 cut(s)	771
DriI	GACNNNNNGTC	1 cut(s)	58
Eam1104I	CTCTTC	2 cut(s)	39, 141
Eam1105I	GACNNNNNGTC	1 cut(s)	58
EarI	CTCTTC	2 cut(s)	39, 141
EciI	GGCGGA	1 cut(s)	588
Ecl136II	GAGCTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	802
Eco24I	GRGCYC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	32
EcoO109I	RGGNCCY	2 cut(s)	88, 308
EcoRI	GAATTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	802
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	802
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	3 cut(s)	584, 694, 806
FaqI	GGGAC	4 cut(s)	109, 372, 698, 731
FatI	CATG	3 cut(s)	580, 690, 802
Fnu4HI	GCNGC	4 cut(s)	158, 434, 472, 678
FokI	GGATG	5 cut(s)	62, 121, 134, 582, 854
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	4 cut(s)	158, 434, 472, 678
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	4 cut(s)	158, 434, 472, 678
GsuI	CTGGAG	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	89, 310
HapII	CCGG	2 cut(s)	103, 758
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	584, 694, 806
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	2 cut(s)	170, 278
HpaII	CCGG	2 cut(s)	103, 758
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	833
Hpy188I	TCNGA	2 cut(s)	191, 266
Hpy188III	TCNNGA	5 cut(s)	27, 65, 167, 650, 716
Hpy8I	GTNNAC	1 cut(s)	833
HpyAV	CCTTC	2 cut(s)	268, 321
HpyCH4III	ACNGT	4 cut(s)	79, 386, 722, 797
HpyCH4IV	ACGT	2 cut(s)	178, 353
HpyCH4V	TGCA	8 cut(s)	14, 122, 142, 416, 554, 677, 690, 868
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 740
HpyF3I	CTNAG	3 cut(s)	224, 238, 291
HpySE526I	ACGT	2 cut(s)	178, 353
Hsp92II	CATG	3 cut(s)	584, 694, 806
HspAI	GCGC	1 cut(s)	431
Kzo9I	GATC	1 cut(s)	771
LguI	GCTCTTC	2 cut(s)	39, 141
LmnI	GCTCC	3 cut(s)	29, 479, 761
Lsp1109I	GCAGC	3 cut(s)	144, 420, 689
LweI	GCATC	2 cut(s)	99, 425
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	2 cut(s)	178, 353
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	1 cut(s)	773
MboI	GATC	1 cut(s)	771
MboII	GAAGA	6 cut(s)	26, 128, 215, 218, 526, 699
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	3 cut(s)	126, 230, 321
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	6 cut(s)	174, 192, 219, 241, 504, 612
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	103, 758
MspR9I	CCNGG	2 cut(s)	92, 759
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	413, 740
NciI	CCSGG	1 cut(s)	759
NcoI	CCATGG	1 cut(s)	802
NdeII	GATC	1 cut(s)	771
NlaIII	CATG	3 cut(s)	584, 694, 806
NlaIV	GGNNCC	1 cut(s)	475
PasI	CCCWGGG	1 cut(s)	91
PciSI	GCTCTTC	2 cut(s)	39, 141
PfeI	GAWTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	757
PkrI	GCNGC	4 cut(s)	159, 435, 473, 679
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	34
Psp1406I	AACGTT	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	88, 308
PstI	CTGCAG	2 cut(s)	144, 679
PstNI	CAGNNNCTG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	832
RsaNI	GTAC	1 cut(s)	831
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	34
SapI	GCTCTTC	2 cut(s)	39, 141
SatI	GCNGC	4 cut(s)	158, 434, 472, 678
Sau3AI	GATC	1 cut(s)	771
Sau96I	GGNCC	2 cut(s)	88, 308
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	92, 759
SduI	GDGCHC	1 cut(s)	34
SfaNI	GCATC	2 cut(s)	99, 425
SfcI	CTRYAG	2 cut(s)	140, 675
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	126, 230, 321
SsiI	CCGC	2 cut(s)	471, 599
SspMI	CTAG	1 cut(s)	456
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	2 cut(s)	90, 757
StyI	CCWWGG	1 cut(s)	802
TaaI	ACNGT	4 cut(s)	79, 386, 722, 797
TaiI	ACGT	2 cut(s)	181, 356
TasI	AATT	3 cut(s)	126, 230, 321
TauI	GCSGC	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	170
TseI	GCWGC	3 cut(s)	157, 433, 677
TspDTI	ATGAA	6 cut(s)	136, 287, 380, 484, 699, 707
XapI	RAATTY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.