RchiOBHm_Chr5g0015401

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017751
Physical Location & Seq
Reverse (-)
10647865 .. 10648321
457 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGCTTAGTGTGATATCCGCTGTTTCGAGCTTAGGGGCACTGGAATTGGGTCAGTGGGTTCATGACTTTATAAACAAAAGTCAACTAAAACTTACCGTATCATTGGGTACTGCATTGATCGACATGTATTCGCGTTGTGGATCTGTTGATAAATCTATTGAAATTCTTGATGAAATGTCATTGAAGAATGTACAGACATGGACAGCATTGAGTACTGGCCTTGCTGTGCATGGATGCAGTAGAGAAGCACTAAGGGTCTTTTATGAGATGAAAAAAGCTGGCTTGCAGCCAGATCATATGTCTATAACTGGGATTTTAGTGGCATGTAGCCATGGTGGACTTGTGGAAGATGGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

119

Amino Acids

12.77

Weight (kDa)

5.71

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 62 - 110 1e-06 PPR repeat family
PPR PF01535 66 - 95 4.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AccII CGCG 1 cut(s) 133
AciI CCGC 1 cut(s) 18
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 162
AfaI GTAC 3 cut(s) 109, 192, 214
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 161, 184
AluBI AGCT 2 cut(s) 30, 278
AluI AGCT 2 cut(s) 30, 278
AlwI GGATC 1 cut(s) 148
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 344
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
BmcAI AGTACT 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 331
Bse1I ACTGG 3 cut(s) 45, 220, 313
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 1 cut(s) 239
BseNI ACTGG 3 cut(s) 45, 220, 313
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 219
BsnI GGCC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 40
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 3 cut(s) 117, 140, 292
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 1 cut(s) 18
BspANI GGCC 1 cut(s) 219
BspFNI CGCG 1 cut(s) 133
BspHI TCATGA 1 cut(s) 61
BspPI GGATC 1 cut(s) 148
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 3 cut(s) 45, 220, 313
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 3 cut(s) 117, 140, 292
BssT1I CCWWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 280, 284
BstDEI CTNAG 3 cut(s) 5, 31, 251
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 3 cut(s) 120, 143, 295
BstMBI GATC 3 cut(s) 117, 140, 292
BstNSI RCATGY 2 cut(s) 127, 327
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 2 cut(s) 38, 59
Cac8I GCNNGC 2 cut(s) 280, 284
CciI TCATGA 1 cut(s) 61
Csp6I GTAC 3 cut(s) 108, 191, 213
CviAII CATG 6 cut(s) 62, 124, 198, 230, 324, 332
CviJI RGCY 6 cut(s) 30, 219, 278, 282, 289, 330
CviKI_1 RGCY 6 cut(s) 30, 219, 278, 282, 289, 330
CviQI GTAC 3 cut(s) 108, 191, 213
DdeI CTNAG 3 cut(s) 5, 31, 251
DpnI GATC 3 cut(s) 119, 142, 294
DpnII GATC 3 cut(s) 117, 140, 292
Eco130I CCWWGG 1 cut(s) 331
Eco32I GATATC 1 cut(s) 15
EcoRV GATATC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 6 cut(s) 65, 127, 201, 233, 327, 335
FatI CATG 6 cut(s) 61, 123, 197, 229, 323, 331
FauNDI CATATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 1 cut(s) 219
Hin1II CATG 6 cut(s) 65, 127, 201, 233, 327, 335
HincII GTYRAC 1 cut(s) 83
HindII GTYRAC 1 cut(s) 83
Hpy166II GTNNAC 2 cut(s) 83, 338
Hpy188III TCNNGA 2 cut(s) 62, 167
Hpy8I GTNNAC 2 cut(s) 83, 338
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 113, 229, 237, 286
HpyF3I CTNAG 3 cut(s) 5, 31, 251
Hsp92II CATG 6 cut(s) 65, 127, 201, 233, 327, 335
Kzo9I GATC 3 cut(s) 117, 140, 292
LpnPI CCDG 5 cut(s) 26, 201, 264, 294, 303
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 224
MalI GATC 3 cut(s) 119, 142, 294
MboI GATC 3 cut(s) 117, 140, 292
MboII GAAGA 2 cut(s) 196, 359
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 44, 162
MspA1I CMGCKG 1 cut(s) 20
MvnI CGCG 1 cut(s) 133
NcoI CCATGG 1 cut(s) 331
NdeI CATATG 1 cut(s) 297
NdeII GATC 3 cut(s) 117, 140, 292
NlaIII CATG 6 cut(s) 65, 127, 201, 233, 327, 335
NspI RCATGY 2 cut(s) 127, 327
PagI TCATGA 1 cut(s) 61
PciI ACATGT 1 cut(s) 123
PkrI GCNGC 1 cut(s) 288
PscI ACATGT 1 cut(s) 123
PsiI TTATAA 1 cut(s) 71
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 3 cut(s) 109, 192, 214
RsaNI GTAC 3 cut(s) 108, 191, 213
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 3 cut(s) 117, 140, 292
ScaI AGTACT 1 cut(s) 214
SduI GDGCHC 1 cut(s) 40
SetI ASST 2 cut(s) 32, 280
SfaNI GCATC 1 cut(s) 224
Sse9I AATT 2 cut(s) 44, 162
SsiI CCGC 1 cut(s) 18
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 26, 120
TasI AATT 2 cut(s) 44, 162
TatI WGTACW 2 cut(s) 190, 212
TscAI CASTG 2 cut(s) 45, 59
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 3 cut(s) 50, 186, 284
TspRI CASTG 2 cut(s) 45, 59
XapI RAATTY 1 cut(s) 162
XceI RCATGY 2 cut(s) 127, 327
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.