RchiOBHm_Chr5g0018131

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017309
Physical Location & Seq
Reverse (-)
12633956 .. 12636092
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
ATGGAACACATTACTGATGAACAATTGAAAATCATGTCACCTGAGCAACTTAATGAACAATTTAGAGTGAAGTTCAGACACGCATTGACGTCTCTTTTGGCAGAGGGAGATTTTGAGGATGACAACATTGCGAAAGCCCTCCACTGTTGTGAGCAAGCGGCTACAAAATTTGCTAAAGGTTATATTGAAAAGATCCATGTTAGTTGTTTGTGGGTGCTTTGTCGATGTATGTCTCTAGAGGAATGTGAGCAGCCGATTGGACAAGATGGCAGCTTTATGTCCTTGCTAAAAAGGGGTACTGAAGAAAGCAATATACGTGGTCAAGCGTATATGGGCAGTAGCACACTGGAATCAGTAAGACTTGCAGTCACTGTTCTTGGTACCACCCTGACTTTTGGTTTGATCAAGATGAAGTTATGCCTCACCCTGGAAAACATTGAGTGGAAGATGAGAAAAATGACCAATGCTGAGGCTTTACTTAGGTTTCTGAATGAGTCTTTTGAGTGGGAAGAAAAATCAGATGAGGGAGTGGTTTACAATCGAATGATTCGGTCTCTAGAACAGGCGCATAATGAGATAGGTTTGATTCCAAATTTAGGGCCAAGGGAACTGGGAACCATTACAGGAAGTGATGGGCTTAAAATAAATCTGGATGACATAAATCAACGGCATGAATTTATCGATAGATTTCTTGCTGATACAGTTTCCATTGCTACCAAACTTGAGCTTCTCTTAACCTTCCCCTTGCTGCCTAATTGGCAGAGTTTTTTACATGCAACAAAAGGTAATTCTTTGGACTGGCTTGAGGGGAAGATTAAAGTAATGTTAGCTCGTGTAGAAGTCATTAACTCTAAAGCAAATGCATTTATTGACAAATATGAAGGACCAAACCTTGAAGTTCTCAACTTCCAGAGGAAAATGACAGCGCCCATTGAGAACATGTGGCAAAATTTATTGGGAGCTTTACTCTGGACTTCTAGAAATATGATGCGTGGAGATGGTCAAGTCAGATGTCACGACTACCTTGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000956 GO:0002181 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022414 GO:0022613 GO:0022625 GO:0022626 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 ko01130 ko03010 map00230 map01100 map01110 map01130 map03010
Pfam Domains
Protein Families
Ribosomal_L35Ae

Protein Analysis

344

Amino Acids

39.35

Weight (kDa)

5.43

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24700 FvH4_5g24710
rosa_chinensis RchiOBHm_Chr5g0018131
rosa_roxburghii Rroxscaffold_1G00059670
rosa_samantha Rh5AG132000 Rh5AG133400 Rh5CG142500 Rh5CG142600 Rh5CG142700 Rh5CG144100 Rh5DG132200
rosa_wichuraiana Rw5G011490 Rw5G011630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 5 cut(s) 167, 592, 674, 949, 1028
AcuI CTGAAG 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 2 cut(s) 298, 382
AfiI CCNNNNNNNGG 2 cut(s) 427, 596
AflIII ACRYGT 1 cut(s) 939
AgsI TTSAA 4 cut(s) 28, 188, 896, 1028
AhdI GACNNNNNGTC 1 cut(s) 365
AjnI CCWGG 1 cut(s) 426
AleI CACNNNNGTG 1 cut(s) 147
AluBI AGCT 4 cut(s) 273, 727, 830, 962
AluI AGCT 4 cut(s) 273, 727, 830, 962
Alw26I GTCTC 3 cut(s) 96, 237, 558
AlwI GGATC 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 1 cut(s) 599
ApeKI GCWGC 3 cut(s) 250, 270, 748
ApoI RAATTY 5 cut(s) 167, 592, 674, 949, 1028
ArsI GACNNNNNNTTYG 4 cut(s) 79, 111, 382, 414
Asp718I GGTACC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 568, 928
AspS9I GGNCC 2 cut(s) 599, 884
AsuHPI GGTGA 2 cut(s) 30, 415
AvaII GGWCC 1 cut(s) 884
BanI GGYRCC 1 cut(s) 380
BauI CACGAG 1 cut(s) 831
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 3 cut(s) 262, 282, 735
BccI CCATC 3 cut(s) 260, 626, 992
BceAI ACGGC 1 cut(s) 683
BciT130I CCWGG 1 cut(s) 428
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 3 cut(s) 96, 237, 558
BfaI CTAG 3 cut(s) 236, 557, 978
BfoI RGCGCY 1 cut(s) 929
BglI GCCNNNNNGGC 1 cut(s) 757
BisI GCNGC 4 cut(s) 159, 251, 271, 749
BlsI GCNGC 4 cut(s) 160, 252, 272, 750
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 884
BmeRI GACNNNNNGTC 1 cut(s) 365
BmgT120I GGNCC 2 cut(s) 599, 884
BmiI GGNNCC 2 cut(s) 382, 616
BmrFI CCNGG 1 cut(s) 428
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 1 cut(s) 978
BmuI ACTGGG 1 cut(s) 620
BplI GAGNNNNNCTC 2 cut(s) 951, 983
Bpu10I CCTNAGC 2 cut(s) 42, 468
BpuEI CTTGAG 2 cut(s) 743, 824
Bsa29I ATCGAT 1 cut(s) 681
BsaAI YACGTR 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 426, 602
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 596
Bse1I ACTGG 3 cut(s) 351, 615, 803
Bse3DI GCAATG 2 cut(s) 126, 708
BseBI CCWGG 1 cut(s) 428
BseCI ATCGAT 1 cut(s) 681
BseDI CCNNGG 2 cut(s) 426, 602
BseGI GGATG 2 cut(s) 124, 658
BseLI CCNNNNNNNGG 2 cut(s) 427, 596
BseMI GCAATG 2 cut(s) 126, 708
BseMII CTCAG 2 cut(s) 33, 459
BseNI ACTGG 3 cut(s) 351, 615, 803
BseXI GCAGC 3 cut(s) 262, 282, 735
BshFI GGCC 1 cut(s) 601
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 681
BslI CCNNNNNNNGG 2 cut(s) 427, 596
BsmAI GTCTC 3 cut(s) 96, 237, 558
BsmBI CGTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 601
Bso31I GGTCTC 1 cut(s) 558
Bsp143I GATC 2 cut(s) 192, 402
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 2 cut(s) 34, 460
BspDI ATCGAT 1 cut(s) 681
BspLI GGNNCC 2 cut(s) 382, 616
BspPI GGATC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 558
BsrDI GCAATG 2 cut(s) 126, 708
BsrI ACTGG 3 cut(s) 351, 615, 803
BssECI CCNNGG 2 cut(s) 426, 602
BssMI GATC 2 cut(s) 192, 402
BssNI GRCGYC 1 cut(s) 89
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 1 cut(s) 602
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 146, 373, 703
BstACI GRCGYC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 3 cut(s) 42, 468, 479
BstF5I GGATG 2 cut(s) 124, 658
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 2 cut(s) 568, 928
BstKTI GATC 2 cut(s) 195, 405
BstMAI GTCTC 3 cut(s) 96, 237, 558
BstMBI GATC 2 cut(s) 192, 402
BstMWI GCNNNNNNNGC 1 cut(s) 757
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 2 cut(s) 776, 943
BstSCI CCNGG 1 cut(s) 426
BstV1I GCAGC 3 cut(s) 262, 282, 735
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
Bsu15I ATCGAT 1 cut(s) 681
BsuRI GGCC 1 cut(s) 601
BsuTUI ATCGAT 1 cut(s) 681
BtsCI GGATG 2 cut(s) 124, 658
BtsIMutI CAGTG 3 cut(s) 142, 344, 369
Cac8I GCNNGC 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 371
CfoI GCGC 2 cut(s) 568, 928
Cfr13I GGNCC 2 cut(s) 599, 884
ClaI ATCGAT 1 cut(s) 681
Csp6I GTAC 2 cut(s) 297, 381
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 5 cut(s) 34, 197, 671, 773, 940
CviQI GTAC 2 cut(s) 297, 381
DdeI CTNAG 3 cut(s) 42, 468, 479
DpnI GATC 2 cut(s) 194, 404
DpnII GATC 2 cut(s) 192, 402
DriI GACNNNNNGTC 1 cut(s) 365
Eam1105I GACNNNNNGTC 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 602
Eco31I GGTCTC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 884
Eco57I CTGAAG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 602
EcoT22I ATGCAT 1 cut(s) 865
ErhI CCWWGG 1 cut(s) 602
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 5 cut(s) 37, 200, 674, 776, 943
FatI CATG 5 cut(s) 33, 196, 670, 772, 939
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 4 cut(s) 159, 251, 271, 749
FokI GGATG 2 cut(s) 131, 665
Fsp4HI GCNGC 4 cut(s) 159, 251, 271, 749
FspBI CTAG 3 cut(s) 236, 557, 978
GlaI GCGC 2 cut(s) 567, 927
GluI GCNGC 4 cut(s) 159, 251, 271, 749
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 1 cut(s) 601
HhaI GCGC 2 cut(s) 568, 928
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 5 cut(s) 37, 200, 674, 776, 943
Hin6I GCGC 2 cut(s) 566, 926
HinP1I GCGC 2 cut(s) 566, 926
HinfI GANTC 4 cut(s) 350, 494, 547, 586
HphI GGTGA 2 cut(s) 30, 415
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 4 cut(s) 77, 489, 520, 1010
Hpy188III TCNNGA 8 cut(s) 236, 406, 557, 650, 910, 970, 978, 1016
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 2 cut(s) 748, 875
HpyCH4III ACNGT 3 cut(s) 146, 373, 703
HpyCH4IV ACGT 2 cut(s) 89, 316
HpyCH4V TGCA 3 cut(s) 365, 776, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 757
HpyF3I CTNAG 3 cut(s) 42, 468, 479
HpySE526I ACGT 2 cut(s) 89, 316
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 5 cut(s) 37, 200, 674, 776, 943
HspAI GCGC 2 cut(s) 566, 926
KpnI GGTACC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 2 cut(s) 192, 402
LmnI GCTCC 1 cut(s) 959
Lsp1109I GCAGC 3 cut(s) 262, 282, 735
LweI GCATC 1 cut(s) 978
MaeI CTAG 3 cut(s) 236, 557, 978
MaeII ACGT 2 cut(s) 89, 316
MaeIII GTNAC 3 cut(s) 36, 367, 1013
MalI GATC 2 cut(s) 194, 404
MboI GATC 2 cut(s) 192, 402
MboII GAAGA 4 cut(s) 314, 457, 521, 823
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 1 cut(s) 192
MluCI AATT 9 cut(s) 23, 59, 167, 592, 674, 754, 787, 949, 1028
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 9 cut(s) 97, 109, 149, 232, 431, 463, 517, 799, 906
Mph1103I ATGCAT 1 cut(s) 865
MseI TTAA 5 cut(s) 51, 639, 734, 816, 846
MslI CAYNNNNRTG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 757
NdeII GATC 2 cut(s) 192, 402
NlaIII CATG 5 cut(s) 37, 200, 674, 776, 943
NlaIV GGNNCC 2 cut(s) 382, 616
NmuCI GTSAC 3 cut(s) 36, 367, 1013
NsiI ATGCAT 1 cut(s) 865
NspI RCATGY 2 cut(s) 776, 943
OliI CACNNNNGTG 1 cut(s) 147
PciI ACATGT 1 cut(s) 939
PfeI GAWTC 3 cut(s) 350, 547, 586
PkrI GCNGC 4 cut(s) 160, 252, 272, 750
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
Ppu21I YACGTR 1 cut(s) 317
PscI ACATGT 1 cut(s) 939
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 382, 616
PspPI GGNCC 2 cut(s) 599, 884
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 2 cut(s) 298, 382
RsaNI GTAC 2 cut(s) 297, 381
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 5 cut(s) 51, 639, 734, 816, 846
SatI GCNGC 4 cut(s) 159, 251, 271, 749
Sau3AI GATC 2 cut(s) 192, 402
Sau96I GGNCC 2 cut(s) 599, 884
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 428
SfaNI GCATC 1 cut(s) 978
SinI GGWCC 1 cut(s) 884
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 2 cut(s) 722, 803
SmoI CTYRAG 2 cut(s) 722, 803
Sse9I AATT 9 cut(s) 23, 59, 167, 592, 674, 754, 787, 949, 1028
SsiI CCGC 1 cut(s) 158
SspMI CTAG 3 cut(s) 236, 557, 978
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 3 cut(s) 146, 373, 703
TaiI ACGT 2 cut(s) 92, 319
TaqI TCGA 3 cut(s) 223, 541, 681
TaqII GACCGA 1 cut(s) 540
TasI AATT 9 cut(s) 23, 59, 167, 592, 674, 754, 787, 949, 1028
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 3 cut(s) 350, 547, 586
Tru1I TTAA 5 cut(s) 51, 639, 734, 816, 846
Tru9I TTAA 5 cut(s) 51, 639, 734, 816, 846
TscAI CASTG 3 cut(s) 149, 351, 376
TseFI GTSAC 3 cut(s) 36, 367, 1013
TseI GCWGC 3 cut(s) 250, 270, 748
Tsp45I GTSAC 3 cut(s) 36, 367, 1013
TspDTI ATGAA 5 cut(s) 33, 69, 425, 687, 894
TspRI CASTG 3 cut(s) 149, 351, 376
VpaK11BI GGWCC 1 cut(s) 884
XapI RAATTY 5 cut(s) 167, 592, 674, 949, 1028
XbaI TCTAGA 3 cut(s) 235, 556, 977
XceI RCATGY 2 cut(s) 776, 943
XspI CTAG 3 cut(s) 236, 557, 978
ZraI GACGTC 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.