Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004057

Physical Location & Seq

Genomic Coordinates Reverse (-)

21495715 .. 21499134

Gene Structure 3420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGGAGCACAAGCTTGGGGCTTCATCGGTGGCCTATCTTGGCTCGTCAGCGAGTACTTCTTCCGCAAAGATCTGCGCGACTACAACCAAAGTTTTATTCTTTGTCCTGGGAGAGGTGTCATAGAGGTGGCATTGGCTTCAGGGCTTGCAGCAGTAAGTTAAAGAAGAGCATTAGAGGTTGTGCCACCAATGCATTTGTTGTTGCTGATGATAAAAAGTATGGGAACAAGCAGATTATCAGTATTACTCCGCGGCTTTATGATTACATCCTTGCCAATGTACGAGAGCCAGAGGTTCTACGACAACTTAGGGAGGAGACTGCCTCCATGCGTGGTAGTATGATGCAGGTGTCTCCTGACCAGGCACAACTGCTTGCAATGCTTGTGCAGATTCATGGGGCAGAAAAGTGTATTGAAGTTGGTGTATATACAGGTTATTCATCATTGGCTATTGCATTGGTCCTTCCAGAATCAGGTAGGTTAGTAGCTTGTGAAAGAGATGCCCGAAGTCTTGAGGTCGCAAAAAAGTATTATGAAAAAGCCAATGTTTCCCATAAGGTGGATATTAGATATGGACTTGCAGCAGATACCTTAAGGTCACTGATTCTGAACGGTGAAGCATGTAGCTATGATTTTGCATTTGTTGATGCTGACAAGAGAATGTATCCAGAATACTTTGAATTGTTGCTTCAACTCGTGAGGGTTGGGGGTCTAATTGTGTTTGATAATGTCCTCTGGCATGGAAAAGTTGCTGATCCAGAGGTAAATGATGCCAAGACTGTCAGCATTAGAAATTTCAATGCTGATTTAGTGGAGGACAAGCGTGTAAGCATTAGTATGGTACCCATCGGGGATGGCATGACAATCTGTCGAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

293

Amino Acids

32.87

Weight (kDa)

9.18

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	94 - 292	6.3e-73	O-methyltransferase
Methyltransf_24	PF13578	138 - 244	3.2e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61990 AT3G62000 AT3G62000
fragaria_vesca	FvH4_3g16510
malus_domestica	MD05G1209400.v1.1
prunus_persica	Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1 Prupe.4G148100_v2.0.a1
pyrus_communis	pycom05g19550
rosa_chinensis	RchiOBHm_Chr5g0027561
rosa_laevigata	RLG00000033026
rosa_multiflora	Rmu_sc0001647.1_g000001 Rmu_sc0011056.1_g000008
rosa_roxburghii	Rroxscaffold_1G00051980
rosa_samantha	Rh5AG193900 Rh5BG191900 Rh5CG212100 Rh5DG193800
rosa_wichuraiana	Rw5G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	337
Acc65I	GGTACC	1 cut(s)	841
AccB1I	GGYRCC	1 cut(s)	841
AccB7I	CCANNNNNTGG	1 cut(s)	559
AccII	CGCG	2 cut(s)	79, 253
AciI	CCGC	3 cut(s)	65, 251, 253
AclWI	GGATC	1 cut(s)	749
AcsI	RAATTY	1 cut(s)	793
AcuI	CTGAAG	1 cut(s)	124
AfaI	GTAC	3 cut(s)	57, 282, 843
AfiI	CCNNNNNNNGG	3 cut(s)	114, 473, 559
AflII	CTTAAG	1 cut(s)	592
AgsI	TTSAA	4 cut(s)	416, 680, 692, 799
AhdI	GACNNNNNGTC	1 cut(s)	867
AjnI	CCWGG	2 cut(s)	107, 360
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	3 cut(s)	15, 488, 627
AluI	AGCT	3 cut(s)	15, 488, 627
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	311, 357
AlwI	GGATC	1 cut(s)	749
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	150, 581
ApoI	RAATTY	1 cut(s)	793
Asp718I	GGTACC	1 cut(s)	841
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	841
BauI	CACGAG	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	162, 593
BccI	CCATC	2 cut(s)	848, 854
BciT130I	CCWGG	2 cut(s)	109, 362
BciVI	GTATCC	1 cut(s)	675
BcoDI	GTCTC	2 cut(s)	311, 357
BfrI	CTTAAG	1 cut(s)	592
BfuAI	ACCTGC	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	675
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	3 cut(s)	151, 254, 582
BlsI	GCNGC	3 cut(s)	152, 255, 583
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	2 cut(s)	109, 362
Bme18I	GGWCC	1 cut(s)	460
BmeRI	GACNNNNNGTC	1 cut(s)	867
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	843
BmrFI	CCNGG	2 cut(s)	109, 362
BmsI	GCATC	4 cut(s)	333, 490, 637, 760
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpuEI	CTTGAG	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	108, 251
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 473, 559
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	109, 362
BseDI	CCNNGG	2 cut(s)	108, 251
BseGI	GGATG	2 cut(s)	267, 859
BseLI	CCNNNNNNNGG	3 cut(s)	114, 473, 559
BseMI	GCAATG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	162, 593
BsgI	GTGCAG	1 cut(s)	407
Bsh1236I	CGCG	2 cut(s)	79, 253
BshFI	GGCC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	11
BslI	CCNNNNNNNGG	3 cut(s)	114, 473, 559
BsmAI	GTCTC	2 cut(s)	311, 357
BsnI	GGCC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	71, 754
BspACI	CCGC	3 cut(s)	65, 251, 253
BspANI	GGCC	1 cut(s)	34
BspFNI	CGCG	2 cut(s)	79, 253
BspLI	GGNNCC	1 cut(s)	843
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	749
BspQI	GCTCTTC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	841
BspTI	CTTAAG	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	108, 251
BssMI	GATC	2 cut(s)	71, 754
BssSI	CACGAG	1 cut(s)	695
Bst2BI	CACGAG	1 cut(s)	695
Bst2UI	CCWGG	2 cut(s)	109, 362
Bst4CI	ACNGT	2 cut(s)	614, 781
Bst6I	CTCTTC	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	592
BstC8I	GCNNGC	2 cut(s)	148, 375
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	251
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	267, 859
BstFNI	CGCG	2 cut(s)	79, 253
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	2 cut(s)	74, 757
BstMAI	GTCTC	2 cut(s)	311, 357
BstMBI	GATC	2 cut(s)	71, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 379
BstNI	CCWGG	2 cut(s)	109, 362
BstNSI	RCATGY	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	107, 360
BstUI	CGCG	2 cut(s)	79, 253
BstV1I	GCAGC	2 cut(s)	162, 593
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	267, 859
BtsIMutI	CAGTG	1 cut(s)	599
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	148, 375
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	460
Cfr42I	CCGCGG	1 cut(s)	254
Csp6I	GTAC	3 cut(s)	56, 281, 842
CviAII	CATG	5 cut(s)	328, 395, 621, 740, 859
CviQI	GTAC	3 cut(s)	56, 281, 842
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	73, 756
DpnII	GATC	2 cut(s)	71, 754
DriI	GACNNNNNGTC	1 cut(s)	867
Eam1104I	CTCTTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	1 cut(s)	867
EarI	CTCTTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	124
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	107, 360
EcoT22I	ATGCAT	1 cut(s)	196
FaeI	CATG	5 cut(s)	331, 398, 624, 743, 862
FatI	CATG	5 cut(s)	327, 394, 620, 739, 858
Fnu4HI	GCNGC	3 cut(s)	151, 254, 582
FokI	GGATG	2 cut(s)	254, 866
Fsp4HI	GCNGC	3 cut(s)	151, 254, 582
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	3 cut(s)	151, 254, 582
HaeIII	GGCC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	5 cut(s)	331, 398, 624, 743, 862
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	3 cut(s)	391, 470, 604
HphI	GGTGA	1 cut(s)	626
Hpy188I	TCNGA	1 cut(s)	609
Hpy188III	TCNNGA	6 cut(s)	356, 467, 512, 668, 697, 758
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	2 cut(s)	614, 781
HpyCH4V	TGCA	8 cut(s)	150, 194, 346, 377, 388, 455, 581, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 379
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	5 cut(s)	331, 398, 624, 743, 862
HspAI	GCGC	1 cut(s)	77
KpnI	GGTACC	1 cut(s)	845
KspI	CCGCGG	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	71, 754
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	6
Lsp1109I	GCAGC	2 cut(s)	162, 593
LweI	GCATC	4 cut(s)	333, 490, 637, 760
MaeIII	GTNAC	1 cut(s)	597
MalI	GATC	2 cut(s)	73, 756
MboI	GATC	2 cut(s)	71, 754
MboII	GAAGA	2 cut(s)	53, 178
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	3 cut(s)	680, 714, 793
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	2 cut(s)	161, 593
MslI	CAYNNNNRTG	2 cut(s)	126, 836
MspA1I	CMGCKG	1 cut(s)	253
MspCI	CTTAAG	1 cut(s)	592
MspR9I	CCNGG	2 cut(s)	109, 362
MvaI	CCWGG	2 cut(s)	109, 362
MvnI	CGCG	2 cut(s)	79, 253
MwoI	GCNNNNNNNGC	2 cut(s)	191, 379
NdeII	GATC	2 cut(s)	71, 754
NlaIII	CATG	5 cut(s)	331, 398, 624, 743, 862
NlaIV	GGNNCC	1 cut(s)	843
NmuCI	GTSAC	1 cut(s)	597
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	624
PaqCI	CACCTGC	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	391, 470, 604
PflMI	CCANNNNNTGG	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	152, 255, 583
Psp6I	CCWGG	2 cut(s)	107, 360
PspGI	CCWGG	2 cut(s)	107, 360
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	3 cut(s)	57, 282, 843
RsaNI	GTAC	3 cut(s)	56, 281, 842
RseI	CAYNNNNRTG	2 cut(s)	126, 836
SacII	CCGCGG	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	161, 593
SatI	GCNGC	3 cut(s)	151, 254, 582
Sau3AI	GATC	2 cut(s)	71, 754
Sau96I	GGNCC	1 cut(s)	460
ScaI	AGTACT	1 cut(s)	57
ScrFI	CCNGG	2 cut(s)	109, 362
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	4 cut(s)	333, 490, 637, 760
Sfr303I	CCGCGG	1 cut(s)	254
SgrBI	CCGCGG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	2 cut(s)	126, 836
SmlI	CTYRAG	2 cut(s)	512, 592
SmoI	CTYRAG	2 cut(s)	512, 592
Sse9I	AATT	3 cut(s)	680, 714, 793
SsiI	CCGC	3 cut(s)	65, 251, 253
StyD4I	CCNGG	2 cut(s)	107, 360
TaaI	ACNGT	2 cut(s)	614, 781
TaqI	TCGA	1 cut(s)	871
TasI	AATT	3 cut(s)	680, 714, 793
TatI	WGTACW	1 cut(s)	55
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	3 cut(s)	391, 470, 604
Tru1I	TTAA	2 cut(s)	161, 593
Tru9I	TTAA	2 cut(s)	161, 593
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	597
TseI	GCWGC	2 cut(s)	150, 581
Tsp45I	GTSAC	1 cut(s)	597
TspDTI	ATGAA	4 cut(s)	14, 383, 429, 549
TspRI	CASTG	1 cut(s)	606
Van91I	CCANNNNNTGG	1 cut(s)	559
Vha464I	CTTAAG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	460
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	793
XceI	RCATGY	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	57
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.