RchiOBHm_Chr5g0033911

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014349
Physical Location & Seq
Reverse (-)
27797365 .. 27799426
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
ATGAAAGCTGCAGGTTCTTTCTGTGTTCTTTTTTGGCAGATTATCTTCTTTGTTAGTGTAGTTTTGGAGGGCATCAATGGCGCTCAAGCTAATGGTTGGCTTAACGCTCATGCAACTTTCTATGGGGTCAACCAGGACCCTGCCACCCTTGGAGGTGCGTGTGGTTATGGAAATACATTAATGCTTGCGGGGTTCGGAGTGAACACAGCAGCAGTTAGTGGCATACTTTTCAGAGGTGGCGAGGCATGTGGTGCTTGTTACCAAGTGATGTGCAACTATAAGTTGGATCCAAAGTGGTGCCTTCAACGACGAGCCGTGACTGTATCAGCCACCAATTTCTGCCCGCCAAACAACAATGGAGGGTGGTGCAATCCCCCTCACCACCACTTCGACATGTCTATGCCGGCGTTTCTTCTCATTGCACGACAAGGAAATGAAGGCATTGTTCCTGTGATCTACAGAAGAGGAGGAGTCCGATTCACGTTGAAAGGGCAATCGAGTTTTAACATGGTGATGATATCGAATGTTGGCGGAAGCGGCGCCGCGAAGGGGGCGTGGATAAGGGTGTCGAGGATGAGAAGCGGCACATGGATACCGATGCATAGGAATTGGGGTGCGAATTGGCAAAGCAGCATCGACCTGAGAAATCAACAACTTTCTTTCAAGCTCACTTTGATTGATGGAAAAGCCCTAGTGTTTTACAACGTTGTTCCTTCCACTTGGAGATTTGGACAAACATTTTCATCCCAGAACCAGTTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

254

Amino Acids

27.8

Weight (kDa)

9.69

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 38 - 126 2.5e-07 EXPB1-like domain 1
DPBB_1 PF03330 69 - 153 1.6e-18 Lytic transglycolase
Expansin_C PF01357 158 - 238 5e-23 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15370 AT3G15370
fragaria_vesca FvH4_3g20110
malus_domestica MD03G1225900.v1.1 MD11G1245100.v1.1 MD11G1245500.v1.1
prunus_persica Prupe.4G183400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033911
rosa_laevigata RLG00000033510
rosa_multiflora Rmu_sc0001150.1_g000013 Rmu_sc0016967.1_g000001
rosa_rugosa Rorug05G0143300.1
rosa_samantha Rh5AG234100 Rh5BG234700 Rh5CG265000 Rh5DG241600
rosa_wichuraiana Rw5G021520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2
AccB1I GGYRCC 2 cut(s) 297, 539
AccII CGCG 1 cut(s) 545
AciI CCGC 6 cut(s) 188, 344, 531, 537, 543, 582
AclI AACGTT 1 cut(s) 705
AclWI GGATC 2 cut(s) 281, 294
AcyI GRCGYC 1 cut(s) 540
AfiI CCNNNNNNNGG 1 cut(s) 549
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 3 cut(s) 305, 487, 664
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 3 cut(s) 8, 89, 667
AluI AGCT 3 cut(s) 8, 89, 667
AlwI GGATC 2 cut(s) 281, 294
ApeKI GCWGC 3 cut(s) 8, 209, 630
AseI ATTAAT 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 755
AspLEI GCGC 2 cut(s) 83, 542
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 371, 523
AvaII GGWCC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 286
BanI GGYRCC 2 cut(s) 297, 539
BbvI GCAGC 2 cut(s) 221, 642
BccI CCATC 1 cut(s) 674
BceAI ACGGC 1 cut(s) 299
BciT130I CCWGG 1 cut(s) 134
BciVI GTATCC 1 cut(s) 585
BfaI CTAG 1 cut(s) 692
BfmI CTRYAG 2 cut(s) 9, 457
BfoI RGCGCY 2 cut(s) 84, 543
BfuAI ACCTGC 1 cut(s) 2
BfuI GTATCC 1 cut(s) 585
BisI GCNGC 6 cut(s) 9, 210, 538, 543, 583, 631
BlsI GCNGC 6 cut(s) 10, 211, 539, 544, 584, 632
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 4 cut(s) 138, 288, 299, 541
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 3 cut(s) 81, 588, 642
BpuEI CTTGAG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse118I RCCGGY 1 cut(s) 403
Bse1I ACTGG 1 cut(s) 754
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 579, 743
BseLI CCNNNNNNNGG 1 cut(s) 549
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 632
BseNI ACTGG 1 cut(s) 754
BseRI GAGGAG 2 cut(s) 480, 483
BseXI GCAGC 2 cut(s) 221, 642
Bsh1236I CGCG 1 cut(s) 545
BshNI GGYRCC 2 cut(s) 297, 539
BsiSI CCGG 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 549
Bsp143I GATC 2 cut(s) 286, 453
BspACI CCGC 6 cut(s) 188, 344, 531, 537, 543, 582
BspCNI CTCAG 1 cut(s) 633
BspFNI CGCG 1 cut(s) 545
BspLI GGNNCC 4 cut(s) 138, 288, 299, 541
BspMAI CTGCAG 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 2
BspPI GGATC 2 cut(s) 281, 294
BspT107I GGYRCC 2 cut(s) 297, 539
BsrDI GCAATG 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 403
BsrI ACTGG 1 cut(s) 754
BssAI RCCGGY 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 2 cut(s) 286, 453
BssNI GRCGYC 1 cut(s) 540
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 457
BstACI GRCGYC 1 cut(s) 540
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 186, 344, 405
BstDEI CTNAG 2 cut(s) 641, 762
BstF5I GGATG 2 cut(s) 579, 743
BstFNI CGCG 1 cut(s) 545
BstH2I RGCGCY 2 cut(s) 84, 543
BstHHI GCGC 2 cut(s) 83, 542
BstKTI GATC 2 cut(s) 289, 456
BstMBI GATC 2 cut(s) 286, 453
BstMWI GCNNNNNNNGC 4 cut(s) 78, 251, 537, 551
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 2 cut(s) 249, 397
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 2 cut(s) 9, 457
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 2 cut(s) 221, 642
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuI GTATCC 1 cut(s) 585
BtsCI GGATG 2 cut(s) 579, 743
BveI ACCTGC 1 cut(s) 2
Cac8I GCNNGC 3 cut(s) 186, 344, 405
CfoI GCGC 2 cut(s) 83, 542
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 136
CviAII CATG 5 cut(s) 110, 246, 394, 508, 588
CviJI RGCY 7 cut(s) 8, 89, 100, 314, 329, 667, 689
CviKI_1 RGCY 7 cut(s) 8, 89, 100, 314, 329, 667, 689
DdeI CTNAG 2 cut(s) 641, 762
DinI GGCGCC 1 cut(s) 541
DpnI GATC 2 cut(s) 288, 455
DpnII GATC 2 cut(s) 286, 453
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
EciI GGCGGA 1 cut(s) 546
Eco130I CCWWGG 1 cut(s) 148
Eco32I GATATC 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 132
EcoRV GATATC 1 cut(s) 519
EcoT14I CCWWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 603
EgeI GGCGCC 1 cut(s) 541
EheI GGCGCC 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 5 cut(s) 113, 249, 397, 511, 591
FatI CATG 5 cut(s) 109, 245, 393, 507, 587
FauI CCCGC 2 cut(s) 181, 351
Fnu4HI GCNGC 6 cut(s) 9, 210, 538, 543, 583, 631
FokI GGATG 2 cut(s) 586, 730
Fsp4HI GCNGC 6 cut(s) 9, 210, 538, 543, 583, 631
FspBI CTAG 1 cut(s) 692
GlaI GCGC 2 cut(s) 82, 541
GluI GCNGC 6 cut(s) 9, 210, 538, 543, 583, 631
HaeII RGCGCY 2 cut(s) 84, 543
HapII CCGG 1 cut(s) 404
HhaI GCGC 2 cut(s) 83, 542
Hin1I GRCGYC 1 cut(s) 540
Hin1II CATG 5 cut(s) 113, 249, 397, 511, 591
Hin6I GCGC 2 cut(s) 81, 540
HinP1I GCGC 2 cut(s) 81, 540
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 2 cut(s) 471, 477
HpaII CCGG 1 cut(s) 404
HphI GGTGA 2 cut(s) 371, 523
Hpy166II GTNNAC 2 cut(s) 130, 202
Hpy188I TCNGA 3 cut(s) 197, 233, 476
Hpy8I GTNNAC 2 cut(s) 130, 202
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 4 cut(s) 311, 431, 541, 723
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 2 cut(s) 482, 705
HpyCH4V TGCA 6 cut(s) 11, 113, 273, 369, 422, 601
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 251, 537, 551
HpyF3I CTNAG 2 cut(s) 641, 762
HpySE526I ACGT 2 cut(s) 482, 705
Hsp92I GRCGYC 1 cut(s) 540
Hsp92II CATG 5 cut(s) 113, 249, 397, 511, 591
HspAI GCGC 2 cut(s) 81, 540
KasI GGCGCC 1 cut(s) 539
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Kzo9I GATC 2 cut(s) 286, 453
LpnPI CCDG 7 cut(s) 119, 146, 153, 417, 462, 653, 761
Lsp1109I GCAGC 2 cut(s) 221, 642
LweI GCATC 3 cut(s) 81, 588, 642
MaeI CTAG 1 cut(s) 692
MaeII ACGT 2 cut(s) 482, 705
MaeIII GTNAC 2 cut(s) 257, 316
MalI GATC 2 cut(s) 288, 455
MboI GATC 2 cut(s) 286, 453
MboII GAAGA 3 cut(s) 37, 404, 474
MflI RGATCY 1 cut(s) 286
MluCI AATT 3 cut(s) 334, 607, 619
Mly113I GGCGCC 1 cut(s) 540
MlyI GAGTC 1 cut(s) 480
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 9 cut(s) 61, 146, 227, 235, 353, 387, 458, 461, 564
Mph1103I ATGCAT 1 cut(s) 603
MroNI GCCGGC 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 755
MseI TTAA 3 cut(s) 102, 179, 504
MslI CAYNNNNRTG 2 cut(s) 398, 512
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 4 cut(s) 78, 251, 537, 551
NaeI GCCGGC 1 cut(s) 405
NarI GGCGCC 1 cut(s) 540
NdeII GATC 2 cut(s) 286, 453
NgoMIV GCCGGC 1 cut(s) 403
NlaIII CATG 5 cut(s) 113, 249, 397, 511, 591
NlaIV GGNNCC 4 cut(s) 138, 288, 299, 541
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 603
NspI RCATGY 2 cut(s) 249, 397
PciI ACATGT 1 cut(s) 393
PdiI GCCGGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 1 cut(s) 477
PkrI GCNGC 6 cut(s) 10, 211, 539, 544, 584, 632
PleI GAGTC 1 cut(s) 479
PluTI GGCGCC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 479
PpuMI RGGWCCY 1 cut(s) 136
PscI ACATGT 1 cut(s) 393
PshBI ATTAAT 1 cut(s) 179
Psp1406I AACGTT 1 cut(s) 705
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 4 cut(s) 138, 288, 299, 541
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 286
RseI CAYNNNNRTG 2 cut(s) 398, 512
SaqAI TTAA 3 cut(s) 102, 179, 504
SatI GCNGC 6 cut(s) 9, 210, 538, 543, 583, 631
Sau3AI GATC 2 cut(s) 286, 453
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 480
ScrFI CCNGG 1 cut(s) 134
SetI ASST 9 cut(s) 10, 16, 91, 157, 238, 485, 642, 669, 708
SfaNI GCATC 3 cut(s) 81, 588, 642
SfcI CTRYAG 2 cut(s) 9, 457
SfoI GGCGCC 1 cut(s) 541
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 398, 512
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 334, 607, 619
SsiI CCGC 6 cut(s) 188, 344, 531, 537, 543, 582
SspDI GGCGCC 1 cut(s) 539
SspMI CTAG 1 cut(s) 692
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 2 cut(s) 485, 708
TaqI TCGA 5 cut(s) 390, 497, 521, 569, 636
TasI AATT 3 cut(s) 334, 607, 619
TauI GCSGC 3 cut(s) 540, 545, 585
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 3 cut(s) 102, 179, 504
Tru9I TTAA 3 cut(s) 102, 179, 504
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 8, 209, 630
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 3 cut(s) 17, 450, 732
VpaK11BI GGWCC 1 cut(s) 136
VspI ATTAAT 1 cut(s) 179
XceI RCATGY 2 cut(s) 249, 397
XmnI GAANNNNTTC 1 cut(s) 755
XspI CTAG 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.