RchiOBHm_Chr5g0041161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016023
Physical Location & Seq
Forward (+)
35830320 .. 35831349
1030 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGAGAAGCCATCTTCTTCCCCTCTCATCATCCTCAAGATCCTTGCTTTTCAGGTCCTTAACATCACCACCGTCATCGTCATCATCATCATGTAGTCCTCCTAACCAGTTTGGGAGATGTTATAGTGGCAGCCATGGCCAGGGGGAGCAGGAGATGACTAGAGCGCCATCGACAGCAGAAGAGTTCAAGAGAGTTGCAGAGGAGAAGCTGAAGGAAGCCGAGCAAGGCGTGGCCAATCAGACCTTTGAGAAGACTTATGATGGCATTGAGGAGGATACTGTAGGCGACGCCAAAATTGAGTCCGTCAAGGAAAGGTACAAGCAGCATGAACCGGGGCCTGACTACCGTAGGAGGCCAGATCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.66

Weight (kDa)

5.83

Isoelectric Point (pI)

83.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55135
fragaria_vesca FvH4_3g23370
malus_domestica MD03G1195000.v1.1
prunus_persica Prupe.4G221600_v2.0.a1
pyrus_communis pycom03g14710
rosa_chinensis RchiOBHm_Chr5g0041161
rosa_laevigata RLG00000034032
rosa_multiflora Rmu_sc0007618.1_g000020
rosa_roxburghii Rroxscaffold_1G00039490
rosa_rugosa Rorug05G0190200
rosa_samantha Rh5AG276100 Rh5BG281000 Rh5CG313200 Rh5DG289100
rosa_wichuraiana Rw5G025970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 2 cut(s) 136, 231
AcuI CTGAAG 1 cut(s) 230
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AlwI GGATC 1 cut(s) 33
AoxI GGCC 4 cut(s) 136, 231, 335, 353
ApeKI GCWGC 2 cut(s) 129, 322
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 2 cut(s) 54, 335
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 57
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 2 cut(s) 138, 233
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 141, 334
BccI CCATC 3 cut(s) 18, 175, 254
BciT130I CCWGG 1 cut(s) 140
BciVI GTATCC 1 cut(s) 268
BcnI CCSGG 1 cut(s) 333
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 279
BfoI RGCGCY 1 cut(s) 167
BfuI GTATCC 1 cut(s) 268
BisI GCNGC 2 cut(s) 130, 323
BlsI GCNGC 2 cut(s) 131, 324
Bme1390I CCNGG 2 cut(s) 140, 333
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 54, 335
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 2 cut(s) 140, 333
BpiI GAAGAC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 19
BpuMI CCSGG 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 133, 139, 332
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 3 cut(s) 133, 139, 332
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 2 cut(s) 215, 284
BseXI GCAGC 2 cut(s) 141, 334
BshFI GGCC 4 cut(s) 138, 233, 337, 355
BsiSI CCGG 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 139
BsnI GGCC 4 cut(s) 138, 233, 337, 355
Bsp143I GATC 2 cut(s) 38, 358
Bsp19I CCATGG 1 cut(s) 133
BspANI GGCC 4 cut(s) 138, 233, 337, 355
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 133, 139, 332
BssMI GATC 2 cut(s) 38, 358
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 3 cut(s) 72, 280, 347
Bst6I CTCTTC 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 2 cut(s) 41, 361
BstMBI GATC 2 cut(s) 38, 358
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 138, 331
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 141, 334
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 4 cut(s) 138, 233, 337, 355
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 29
CciI TCATGA 1 cut(s) 361
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 54, 335
CseI GACGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 316
CviAII CATG 4 cut(s) 90, 134, 326, 362
CviJI RGCY 8 cut(s) 9, 132, 138, 208, 218, 233, 337, 355
CviKI_1 RGCY 8 cut(s) 9, 132, 138, 208, 218, 233, 337, 355
CviQI GTAC 1 cut(s) 316
DpnI GATC 2 cut(s) 40, 360
DpnII GATC 2 cut(s) 38, 358
EaeI YGGCCR 2 cut(s) 136, 231
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 230
EcoO109I RGGNCCY 2 cut(s) 54, 335
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 4 cut(s) 93, 137, 329, 365
FaiI YATR 6 cut(s) 91, 123, 135, 258, 327, 363
FatI CATG 4 cut(s) 89, 133, 325, 361
Fnu4HI GCNGC 2 cut(s) 130, 323
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 2 cut(s) 130, 323
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 165
GluI GCNGC 2 cut(s) 130, 323
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 4 cut(s) 138, 233, 337, 355
HapII CCGG 1 cut(s) 332
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 4 cut(s) 93, 137, 329, 365
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 1 cut(s) 299
HpaII CCGG 1 cut(s) 332
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 3 cut(s) 36, 187, 362
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 3 cut(s) 72, 280, 347
HpyCH4V TGCA 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 4 cut(s) 93, 137, 329, 365
HspAI GCGC 1 cut(s) 164
Kzo9I GATC 2 cut(s) 38, 358
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 7 cut(s) 37, 119, 125, 134, 152, 345, 351
Lsp1109I GCAGC 2 cut(s) 141, 334
MaeI CTAG 1 cut(s) 159
MalI GATC 2 cut(s) 40, 360
MboI GATC 2 cut(s) 38, 358
MboII GAAGA 4 cut(s) 5, 8, 191, 262
MflI RGATCY 1 cut(s) 38
MlsI TGGCCA 2 cut(s) 138, 233
MluCI AATT 1 cut(s) 294
MluNI TGGCCA 2 cut(s) 138, 233
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 7 cut(s) 32, 43, 108, 193, 262, 265, 345
Mox20I TGGCCA 2 cut(s) 138, 233
MscI TGGCCA 2 cut(s) 138, 233
MseI TTAA 2 cut(s) 59, 367
MslI CAYNNNNRTG 1 cut(s) 88
Msp20I TGGCCA 2 cut(s) 138, 233
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 2 cut(s) 140, 333
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 135
NciI CCSGG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 133
NdeII GATC 2 cut(s) 38, 358
NlaIII CATG 4 cut(s) 93, 137, 329, 365
NlaIV GGNNCC 1 cut(s) 336
NmeAIII GCCGAG 1 cut(s) 244
PagI TCATGA 1 cut(s) 361
PkrI GCNGC 2 cut(s) 131, 324
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PpuMI RGGWCCY 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 2 cut(s) 54, 335
PspPPI RGGWCCY 1 cut(s) 54
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 88
SaqAI TTAA 2 cut(s) 59, 367
SatI GCNGC 2 cut(s) 130, 323
Sau3AI GATC 2 cut(s) 38, 358
Sau96I GGNCC 2 cut(s) 54, 335
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 140, 333
SetI ASST 4 cut(s) 56, 210, 245, 317
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 1 cut(s) 294
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 138, 331
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 3 cut(s) 72, 280, 347
TaqI TCGA 1 cut(s) 170
TasI AATT 1 cut(s) 294
Tru1I TTAA 2 cut(s) 59, 367
Tru9I TTAA 2 cut(s) 59, 367
TseI GCWGC 2 cut(s) 129, 322
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 54
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.