RchiOBHm_Chr5g0074761

PPR repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013877
Physical Location & Seq
Reverse (-)
80721881 .. 80723635
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1692 bp
ATGAAAACTTCAGCAGAATCATATCACTTTCTTCCAACAGGCCATAGCTGTTCCAATTGGAGACTTCACATGGCTGCTGTTGCTACTCCATCTCTTCCCAACCAGAACAAGTTACCATCCTTCTCGTCGAGAATTCCGGCCCCCATCGTTTTGCTTCAAATGTGCAGCAACTTTCAAGAAGTAAGACAAGTTCATGCTCAATTGGTTGTATCAGGACTAATTGAGCGCCCTATAAATGGTGGGAGGCTTCTTCAGGCCTATGTCACAGTGTCAAACTTTAACTATGCATTATCAACTTTTGATAGCATATCTAATCCTGATGTGTTTGCCTACAATACAATGATGAGAGGTTTAATACTGAGTAAGTCCCCTTATCATGCACTGAAGCTCTATAGTAGGCTTTTACTAGATGGTTTAAAACCAGACAATTACACCTACACCTTTGTTCTCAAAGCATGTTCCCAAGTGAATGCGCTCTTCGAAGGTAGAGAAGTGCATGGCCGGATAATTAAGGCCGGAATAGCACCAGATACTTACATTCATAGTTCACTGATAAACATGTACTCGAGTTCATCAGATGGTTTGGTCTGTGCAGAGCGAGTTTTAGCTGGCTTTTCCGAGGATAACACACTTGCTAAGAACTCCTTGATTTCGGGTTACCTCAGTCAGGGTCAGGTAGAAAGTGCTAGAAAAATGTTCGATAACCTGGTAGCAAAGGATGATGCATCTTGGAGTGCAATGGTAGCAGGGTACACAAAGAATGGTATGTATGCAGAGGCATTAGTCATCTTTCGAAAGATGTTGAGTTCTCAAGTTTCTCCAAATGAATCAGCACTTGTGAGCTCATTGTGTGCTTGTGCTAATTTGGGAGCACTAGACCAAGGCAAATGGATACATGCATACATTGATAGAATTGGGGCTAGGATTAGTGTCACTGTGGGTACTGCTCTTATAGACATGTATGCAAAGTGTGGCAGCATAGAAAATGCCTATGAAGTTTTCAGGAAGATGCCACAGAAAGACGTAGTTTCATGGGGAGCTATCATTTCTGGTTTCGCCATTCATGGGCGAGCTGCAAAATGTTTTGAATTGTTTGATGATATGGTTGCTGGTGGAATTCACCCAAATGAAGTAATTTTTGTAGGTATTTTATCGGCTTGTTCTCATGCCGGGTATGTTGAAACAGGATACAAGTACTTTGACCAAATGGTTCATCATTATGGGATAAAACCATCCATTGAACATTATGGATGCATGGTGGATCTTCTTGGTCGTGCAGGGCGGCTGGCAGAGGCAGAAGGGCTCATCATGTCAATGCCGGAACTGCCTAACTCGGTTATATGGGGTGCATTTCTTGGTGCTTGTAGAATGCACAGTGACGTGAGGAGAGGTAACCTTGCTTTCAAGCACTTGACTGATCTTGAGCCAACGTCTGGTGACAGATACAAACTTGCAGGAATTATGTTTGCTAATGCTGGGGAAAAGGAAAATGCTACTAAAATTAGGACGATCATCACAGATAATGACTTGGAGACAACTCGTGGAGTAAGCTCAATTGAGATAGATGGTGTAGTCCACGAGTTTGTAGCAGGTACCATCAACCATAGCAGGCACAAAGAAATTTACAGAATGTGGGAGAGGGTTAATAGGTTATTAGAAATCCATGAGCTTGAAATTTGCATTCCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

563

Amino Acids

62.16

Weight (kDa)

6.85

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 106 - 154 2.7e-10 PPR repeat family
PPR PF01535 243 - 270 6.1e-06 PPR repeat
PPR_2 PF13041 340 - 388 8.5e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013877)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28280 AT4G28280 AT4G28280
malus_domestica MD03G1042100.v1.1 MD11G1044400.v1.1 MD11G1045000.v1.1
prunus_persica Prupe.6G034000_v2.0.a1
pyrus_communis pycom03g03260
rosa_chinensis RchiOBHm_Chr5g0074761
rosa_laevigata RLG00000036502
rosa_multiflora Rmu_sc0000909.1_g000018
rosa_roxburghii Rroxscaffold_1G00006820
rosa_rugosa Rorug05G0433700
rosa_samantha Rh5AG491400 Rh5BG512800 Rh5CG536500
rosa_wichuraiana Rw5G045510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1580
Acc65I GGTACC 1 cut(s) 1592
AccB1I GGYRCC 1 cut(s) 1592
AccB7I CCANNNNNTGG 1 cut(s) 1433
AciI CCGC 1 cut(s) 1282
AclWI GGATC 1 cut(s) 1269
AcoI YGGCCR 1 cut(s) 499
AcsI RAATTY 4 cut(s) 132, 1116, 1620, 1674
AcuI CTGAAG 2 cut(s) 236, 404
AfaI GTAC 5 cut(s) 563, 752, 943, 1196, 1594
AfiI CCNNNNNNNGG 4 cut(s) 236, 667, 1065, 1433
AflIII ACRYGT 2 cut(s) 558, 957
AgsI TTSAA 7 cut(s) 158, 176, 1088, 1181, 1241, 1405, 1673
AjiI CACGTC 1 cut(s) 1381
AjnI CCWGG 1 cut(s) 705
AluBI AGCT 8 cut(s) 48, 388, 608, 843, 1040, 1073, 1551, 1669
AluI AGCT 8 cut(s) 48, 388, 608, 843, 1040, 1073, 1551, 1669
Alw21I GWGCWC 2 cut(s) 845, 874
Alw26I GTCTC 2 cut(s) 55, 1526
AlwI GGATC 1 cut(s) 1269
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 5 cut(s) 40, 138, 255, 499, 513
ApeKI GCWGC 4 cut(s) 74, 165, 975, 1073
ApoI RAATTY 4 cut(s) 132, 1116, 1620, 1674
Asp718I GGTACC 1 cut(s) 1592
AspLEI GCGC 2 cut(s) 228, 475
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 1171
AsuHPI GGTGA 2 cut(s) 1112, 1448
AsuII TTCGAA 2 cut(s) 480, 793
AvaI CYCGRG 1 cut(s) 565
BanI GGYRCC 1 cut(s) 1592
BanII GRGCYC 2 cut(s) 845, 1305
BauI CACGAG 2 cut(s) 1539, 1577
Bbv12I GWGCWC 2 cut(s) 845, 874
BbvI GCAGC 4 cut(s) 61, 177, 987, 1060
BccI CCATC 8 cut(s) 97, 124, 152, 404, 572, 1240, 1559, 1604
BciT130I CCWGG 1 cut(s) 707
BciVI GTATCC 2 cut(s) 885, 1181
BcnI CCSGG 1 cut(s) 1171
BcoDI GTCTC 2 cut(s) 55, 1526
BfaI CTAG 5 cut(s) 407, 687, 875, 921, 1690
BfmI CTRYAG 1 cut(s) 391
BfoI RGCGCY 1 cut(s) 229
BfuAI ACCTGC 1 cut(s) 1580
BfuI GTATCC 2 cut(s) 885, 1181
BisI GCNGC 5 cut(s) 75, 166, 976, 1074, 1283
BlsI GCNGC 5 cut(s) 76, 167, 977, 1075, 1284
BmcAI AGTACT 1 cut(s) 1196
Bme1390I CCNGG 2 cut(s) 707, 1171
BmeT110I CYCGRG 1 cut(s) 565
BmgBI CACGTC 1 cut(s) 1381
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 141, 1594
BmrFI CCNGG 2 cut(s) 707, 1171
BmsI GCATC 4 cut(s) 712, 734, 999, 1241
Bpu14I TTCGAA 2 cut(s) 480, 793
BpuEI CTTGAG 2 cut(s) 795, 1442
BpuMI CCSGG 1 cut(s) 1171
BsaJI CCNNGG 2 cut(s) 618, 880
Bsc4I CCNNNNNNNGG 4 cut(s) 236, 667, 1065, 1433
Bse3DI GCAATG 1 cut(s) 744
BseBI CCWGG 1 cut(s) 707
BseDI CCNNGG 2 cut(s) 618, 880
BseGI GGATG 4 cut(s) 116, 724, 1232, 1256
BseLI CCNNNNNNNGG 4 cut(s) 236, 667, 1065, 1433
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 2 cut(s) 350, 676
BseRI GAGGAG 1 cut(s) 1399
BseXI GCAGC 4 cut(s) 61, 177, 987, 1060
BseYI CCCAGC 1 cut(s) 1475
BsgI GTGCAG 3 cut(s) 184, 612, 1296
BshFI GGCC 5 cut(s) 42, 140, 257, 501, 515
BshNI GGYRCC 1 cut(s) 1592
BsiHKAI GWGCWC 2 cut(s) 845, 874
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 5 cut(s) 137, 502, 516, 1170, 1319
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 4 cut(s) 236, 667, 1065, 1433
BsmAI GTCTC 2 cut(s) 55, 1526
BsmFI GGGAC 1 cut(s) 352
BsmI GAATGC 3 cut(s) 475, 1374, 1680
BsnI GGCC 5 cut(s) 42, 140, 257, 501, 515
BsoBI CYCGRG 1 cut(s) 565
Bsp119I TTCGAA 2 cut(s) 480, 793
Bsp1286I GDGCHC 3 cut(s) 845, 874, 1305
Bsp143I GATC 3 cut(s) 1261, 1417, 1509
BspACI CCGC 1 cut(s) 1282
BspANI GGCC 5 cut(s) 42, 140, 257, 501, 515
BspCNI CTCAG 2 cut(s) 351, 675
BspLI GGNNCC 2 cut(s) 141, 1594
BspMI ACCTGC 1 cut(s) 1580
BspPI GGATC 1 cut(s) 1269
BspQI GCTCTTC 1 cut(s) 482
BspT104I TTCGAA 2 cut(s) 480, 793
BspT107I GGYRCC 1 cut(s) 1592
BsrDI GCAATG 1 cut(s) 744
BssECI CCNNGG 2 cut(s) 618, 880
BssMI GATC 3 cut(s) 1261, 1417, 1509
BssSI CACGAG 2 cut(s) 1539, 1577
BssT1I CCWWGG 1 cut(s) 880
Bst2BI CACGAG 2 cut(s) 1539, 1577
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 3 cut(s) 268, 937, 1376
Bst6I CTCTTC 2 cut(s) 99, 482
BstBI TTCGAA 2 cut(s) 480, 793
BstC8I GCNNGC 4 cut(s) 610, 1071, 1287, 1610
BstDEI CTNAG 3 cut(s) 359, 636, 662
BstEII GGTNACC 2 cut(s) 656, 1391
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 4 cut(s) 116, 724, 1232, 1256
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 2 cut(s) 228, 475
BstKTI GATC 3 cut(s) 1264, 1420, 1512
BstMAI GTCTC 2 cut(s) 55, 1526
BstMBI GATC 3 cut(s) 1261, 1417, 1509
BstMWI GCNNNNNNNGC 4 cut(s) 80, 521, 743, 1324
BstNI CCWGG 1 cut(s) 707
BstNSI RCATGY 4 cut(s) 459, 562, 899, 961
BstPI GGTNACC 2 cut(s) 656, 1391
BstSCI CCNGG 2 cut(s) 705, 1169
BstSFI CTRYAG 1 cut(s) 391
BstV1I GCAGC 4 cut(s) 61, 177, 987, 1060
BstX2I RGATCY 1 cut(s) 1261
BstYI RGATCY 1 cut(s) 1261
BsuI GTATCC 2 cut(s) 885, 1181
BsuRI GGCC 5 cut(s) 42, 140, 257, 501, 515
BtrI CACGTC 1 cut(s) 1381
BtsCI GGATG 4 cut(s) 116, 724, 1232, 1256
BtsIMutI CAGTG 5 cut(s) 273, 380, 548, 933, 1381
BveI ACCTGC 1 cut(s) 1580
Cac8I GCNNGC 4 cut(s) 610, 1071, 1287, 1610
CfoI GCGC 2 cut(s) 228, 475
Cfr13I GGNCC 1 cut(s) 139
CsiI ACCWGGT 1 cut(s) 705
Csp6I GTAC 5 cut(s) 562, 751, 942, 1195, 1593
CviQI GTAC 5 cut(s) 562, 751, 942, 1195, 1593
DdeI CTNAG 3 cut(s) 359, 636, 662
DpnI GATC 3 cut(s) 1263, 1419, 1511
DpnII GATC 3 cut(s) 1261, 1417, 1509
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 1 cut(s) 499
Eam1104I CTCTTC 2 cut(s) 99, 482
EarI CTCTTC 2 cut(s) 99, 482
Ecl136II GAGCTC 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 880
Eco147I AGGCCT 1 cut(s) 257
Eco24I GRGCYC 2 cut(s) 845, 1305
Eco53kI GAGCTC 1 cut(s) 843
Eco57I CTGAAG 2 cut(s) 236, 404
Eco88I CYCGRG 1 cut(s) 565
Eco91I GGTNACC 2 cut(s) 656, 1391
EcoICRI GAGCTC 1 cut(s) 843
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoO65I GGTNACC 2 cut(s) 656, 1391
EcoRI GAATTC 2 cut(s) 132, 1116
EcoRII CCWGG 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 880
EcoT22I ATGCAT 4 cut(s) 289, 727, 901, 1256
EcoT38I GRGCYC 2 cut(s) 845, 1305
ErhI CCWWGG 1 cut(s) 880
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FaqI GGGAC 1 cut(s) 352
Fnu4HI GCNGC 5 cut(s) 75, 166, 976, 1074, 1283
FokI GGATG 4 cut(s) 103, 731, 1219, 1263
FriOI GRGCYC 2 cut(s) 845, 1305
Fsp4HI GCNGC 5 cut(s) 75, 166, 976, 1074, 1283
FspBI CTAG 5 cut(s) 407, 687, 875, 921, 1690
GlaI GCGC 2 cut(s) 227, 474
GluI GCNGC 5 cut(s) 75, 166, 976, 1074, 1283
GsaI CCCAGC 1 cut(s) 1479
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 5 cut(s) 42, 140, 257, 501, 515
HapII CCGG 5 cut(s) 137, 502, 516, 1170, 1319
HhaI GCGC 2 cut(s) 228, 475
Hin6I GCGC 2 cut(s) 226, 473
HinP1I GCGC 2 cut(s) 226, 473
HinfI GANTC 2 cut(s) 17, 827
HpaII CCGG 5 cut(s) 137, 502, 516, 1170, 1319
HphI GGTGA 2 cut(s) 1112, 1448
Hpy166II GTNNAC 3 cut(s) 548, 753, 1576
Hpy188I TCNGA 2 cut(s) 577, 619
Hpy188III TCNNGA 6 cut(s) 129, 176, 213, 317, 1003, 1421
Hpy8I GTNNAC 3 cut(s) 548, 753, 1576
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 3 cut(s) 130, 476, 1292
HpyCH4III ACNGT 3 cut(s) 268, 937, 1376
HpyCH4IV ACGT 3 cut(s) 1023, 1380, 1430
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 521, 743, 1324
HpyF3I CTNAG 3 cut(s) 359, 636, 662
HpySE526I ACGT 3 cut(s) 1023, 1380, 1430
HspAI GCGC 2 cut(s) 226, 473
KpnI GGTACC 1 cut(s) 1596
Kzo9I GATC 3 cut(s) 1261, 1417, 1509
LguI GCTCTTC 1 cut(s) 482
LmnI GCTCC 2 cut(s) 869, 1037
Lsp1109I GCAGC 4 cut(s) 61, 177, 987, 1060
LweI GCATC 4 cut(s) 712, 734, 999, 1241
MabI ACCWGGT 1 cut(s) 705
MaeI CTAG 5 cut(s) 407, 687, 875, 921, 1690
MaeII ACGT 3 cut(s) 1023, 1380, 1430
MaeIII GTNAC 7 cut(s) 111, 262, 656, 931, 1376, 1391, 1436
MalI GATC 3 cut(s) 1263, 1419, 1511
MboI GATC 3 cut(s) 1261, 1417, 1509
MboII GAAGA 6 cut(s) 23, 86, 242, 469, 1018, 1256
MfeI CAATTG 3 cut(s) 55, 200, 1554
MflI RGATCY 1 cut(s) 1261
MhlI GDGCHC 3 cut(s) 845, 874, 1305
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 9 cut(s) 237, 341, 613, 671, 769, 1285, 1377, 1382, 1632
Mph1103I ATGCAT 4 cut(s) 289, 727, 901, 1256
MseI TTAA 5 cut(s) 279, 353, 416, 510, 1644
MslI CAYNNNNRTG 3 cut(s) 1125, 1218, 1313
MspI CCGG 5 cut(s) 137, 502, 516, 1170, 1319
MspR9I CCNGG 2 cut(s) 707, 1171
MunI CAATTG 3 cut(s) 55, 200, 1554
Mva1269I GAATGC 3 cut(s) 475, 1374, 1680
MvaI CCWGG 1 cut(s) 707
MwoI GCNNNNNNNGC 4 cut(s) 80, 521, 743, 1324
NciI CCSGG 1 cut(s) 1171
NdeII GATC 3 cut(s) 1261, 1417, 1509
NlaIV GGNNCC 2 cut(s) 141, 1594
NmuCI GTSAC 4 cut(s) 262, 931, 1376, 1436
NsiI ATGCAT 4 cut(s) 289, 727, 901, 1256
NspI RCATGY 4 cut(s) 459, 562, 899, 961
NspV TTCGAA 2 cut(s) 480, 793
PaeR7I CTCGAG 1 cut(s) 565
PceI AGGCCT 1 cut(s) 257
PciI ACATGT 2 cut(s) 558, 957
PciSI GCTCTTC 1 cut(s) 482
PctI GAATGC 3 cut(s) 475, 1374, 1680
PfeI GAWTC 2 cut(s) 17, 827
PflMI CCANNNNNTGG 1 cut(s) 1433
PkrI GCNGC 5 cut(s) 76, 167, 977, 1075, 1284
PscI ACATGT 2 cut(s) 558, 957
Psp124BI GAGCTC 1 cut(s) 845
Psp6I CCWGG 1 cut(s) 705
PspEI GGTNACC 2 cut(s) 656, 1391
PspFI CCCAGC 1 cut(s) 1475
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 2 cut(s) 141, 1594
PspPI GGNCC 1 cut(s) 139
PspXI VCTCGAGB 1 cut(s) 565
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
PsuI RGATCY 1 cut(s) 1261
RsaI GTAC 5 cut(s) 563, 752, 943, 1196, 1594
RsaNI GTAC 5 cut(s) 562, 751, 942, 1195, 1593
RseI CAYNNNNRTG 3 cut(s) 1125, 1218, 1313
SacI GAGCTC 1 cut(s) 845
SapI GCTCTTC 1 cut(s) 482
SaqAI TTAA 5 cut(s) 279, 353, 416, 510, 1644
SatI GCNGC 5 cut(s) 75, 166, 976, 1074, 1283
Sau3AI GATC 3 cut(s) 1261, 1417, 1509
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 1196
ScrFI CCNGG 2 cut(s) 707, 1171
SduI GDGCHC 3 cut(s) 845, 874, 1305
SexAI ACCWGGT 1 cut(s) 705
SfaNI GCATC 4 cut(s) 712, 734, 999, 1241
SfcI CTRYAG 1 cut(s) 391
Sfr274I CTCGAG 1 cut(s) 565
SfuI TTCGAA 2 cut(s) 480, 793
SlaI CTCGAG 1 cut(s) 565
SmiMI CAYNNNNRTG 3 cut(s) 1125, 1218, 1313
SmlI CTYRAG 3 cut(s) 565, 810, 1421
SmoI CTYRAG 3 cut(s) 565, 810, 1421
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 1 cut(s) 1282
SspMI CTAG 5 cut(s) 407, 687, 875, 921, 1690
SstI GAGCTC 1 cut(s) 845
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 705, 1169
StyI CCWWGG 1 cut(s) 880
TaaI ACNGT 3 cut(s) 268, 937, 1376
TaiI ACGT 3 cut(s) 1026, 1383, 1433
TaqI TCGA 5 cut(s) 128, 480, 566, 699, 793
TatI WGTACW 2 cut(s) 561, 1194
TauI GCSGC 1 cut(s) 1285
TfiI GAWTC 2 cut(s) 17, 827
Tru1I TTAA 5 cut(s) 279, 353, 416, 510, 1644
Tru9I TTAA 5 cut(s) 279, 353, 416, 510, 1644
TscAI CASTG 5 cut(s) 273, 387, 555, 940, 1381
TseFI GTSAC 4 cut(s) 262, 931, 1376, 1436
TseI GCWGC 4 cut(s) 74, 165, 975, 1073
Tsp45I GTSAC 4 cut(s) 262, 931, 1376, 1436
TspRI CASTG 5 cut(s) 273, 387, 555, 940, 1381
Van91I CCANNNNNTGG 1 cut(s) 1433
XagI CCTNNNNNAGG 1 cut(s) 665
XapI RAATTY 4 cut(s) 132, 1116, 1620, 1674
XceI RCATGY 4 cut(s) 459, 562, 899, 961
XhoI CTCGAG 1 cut(s) 565
XspI CTAG 5 cut(s) 407, 687, 875, 921, 1690
ZrmI AGTACT 1 cut(s) 1196
Zsp2I ATGCAT 4 cut(s) 289, 727, 901, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.