RchiOBHm_Chr5g0075341

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015040
Physical Location & Seq
Forward (+)
81167784 .. 81169183
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
ATGCTACCCCTTCCTCCTCCACCTGCATCTCCAATACCTCCTTCACCACTACTACAAGCCCAAAAGCAAACTAATCCCCTTCCTCCTCCACCTGCATCTCCAATACCACCTTCACCACTACTACAAGCCCAAAAGCAAACTAAGCCACACTCTCTAAATCAAATTATCATACCAAAGTATGCCCAGAATCAAGGCCTGGTGCCCGATGCAGCAGCAAATCATGAATCCAGAAAATCAGAAAAACAACCTATGCTCCGGCCACCTCAGGCTCGACGAACCAATCCACTTATATGGTGTTGTGCAATATATTTCAATGGTGACTTCGCTTTATTGGCAAATTTCTCCAACCCAAATCGGAAAATAGATGTAAGATTTGAGTATCTGCAGATGGAACTGTACTTTTCTGATAGGCTCATAGCAACTCAGTCTCTTGACCCTTTCACTCAAAGACCTCGAGAAGGAAGGTTGGAAGCAGTTCACTTGGTATCCAGCTTGGTTTACTTGCCTGAGAATCATGCTGTGGCGCTTCGAACCCAGGTGCAGAACAACAGAGTCGACTATAATATAAGAGGAACATTTAGAGTGAGAGCCAGTCTGGGACTGATCCACTTTTCCTACTGGTTGCATAGCAGATGCCAATTACAGATGACAGGTCCACCGACTGGTGTTTTAGTTGCCCGAAGTTGCAGAACTAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

233

Amino Acids

26.33

Weight (kDa)

10.17

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 115 - 210 2.4e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26490 AT5G56050
fragaria_vesca FvH4_3g42130
malus_domestica MD03G1038000.v1.1 MD11G1039100.v1.1
prunus_persica Prupe.6G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075341
rosa_laevigata RLG00000036551
rosa_multiflora Rmu_sc0000770.1_g000034
rosa_roxburghii Rroxscaffold_1G00006190
rosa_rugosa Rorug05G0439000
rosa_samantha Rh5AG495400 Rh5BG517100 Rh5CG540700 Rh5DG532400
rosa_wichuraiana Rw5G045970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 31, 100
Acc36I ACCTGC 2 cut(s) 31, 100
AccB1I GGYRCC 1 cut(s) 199
AccB7I CCANNNNNTGG 1 cut(s) 662
AccI GTMKAC 1 cut(s) 555
AclWI GGATC 1 cut(s) 598
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 1 cut(s) 337
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 2 cut(s) 458, 662
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 2 cut(s) 195, 534
AjuI GAANNNNNNNTTGG 4 cut(s) 25, 57, 94, 126
AluBI AGCT 1 cut(s) 492
AluI AGCT 1 cut(s) 492
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 1 cut(s) 598
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 2 cut(s) 193, 257
ApeKI GCWGC 2 cut(s) 209, 212
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 474
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 1 cut(s) 653
AsuHPI GGTGA 3 cut(s) 36, 105, 329
AsuII TTCGAA 1 cut(s) 529
AvaI CYCGRG 1 cut(s) 453
AvaII GGWCC 1 cut(s) 653
AxyI CCTNAGG 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 221, 224
BccI CCATC 1 cut(s) 382
BciT130I CCWGG 2 cut(s) 197, 536
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 432
BfmI CTRYAG 1 cut(s) 383
BfoI RGCGCY 1 cut(s) 527
BfuAI ACCTGC 2 cut(s) 31, 100
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 2 cut(s) 210, 213
BlsI GCNGC 2 cut(s) 211, 214
Bme1390I CCNGG 2 cut(s) 197, 536
Bme18I GGWCC 1 cut(s) 653
BmeT110I CYCGRG 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 197, 536
BmsI GCATC 4 cut(s) 35, 104, 196, 623
Bpu14I TTCGAA 1 cut(s) 529
BsaJI CCNNGG 1 cut(s) 534
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 662
Bse1I ACTGG 3 cut(s) 591, 623, 667
Bse21I CCTNAGG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 197, 536
BseDI CCNNGG 1 cut(s) 534
BseLI CCNNNNNNNGG 2 cut(s) 458, 662
BseMII CTCAG 3 cut(s) 278, 437, 498
BseNI ACTGG 3 cut(s) 591, 623, 667
BseRI GAGGAG 2 cut(s) 6, 75
BseSI GKGCMC 1 cut(s) 204
BseXI GCAGC 2 cut(s) 221, 224
BsgI GTGCAG 1 cut(s) 560
BshFI GGCC 2 cut(s) 195, 259
BshNI GGYRCC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 612
BslI CCNNNNNNNGG 2 cut(s) 458, 662
BsmAI GTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 612
BsnI GGCC 2 cut(s) 195, 259
BsoBI CYCGRG 1 cut(s) 453
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 603
BspANI GGCC 2 cut(s) 195, 259
BspCNI CTCAG 3 cut(s) 277, 436, 499
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 387
BspMI ACCTGC 2 cut(s) 31, 100
BspPI GGATC 1 cut(s) 598
BspT104I TTCGAA 1 cut(s) 529
BspT107I GGYRCC 1 cut(s) 199
BsrI ACTGG 3 cut(s) 591, 623, 667
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 197, 536
Bst4CI ACNGT 1 cut(s) 396
BstBI TTCGAA 1 cut(s) 529
BstDEI CTNAG 4 cut(s) 141, 264, 423, 507
BstENI CCTNNNNNAGG 1 cut(s) 456
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 1 cut(s) 606
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 1 cut(s) 603
BstMWI GCNNNNNNNGC 2 cut(s) 142, 332
BstNI CCWGG 2 cut(s) 197, 536
BstSCI CCNGG 2 cut(s) 195, 534
BstSFI CTRYAG 1 cut(s) 383
BstSLI GKGCMC 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 221, 224
BstXI CCANNNNNNTGG 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 264
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 2 cut(s) 195, 259
BveI ACCTGC 2 cut(s) 31, 100
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 653
Csp6I GTAC 1 cut(s) 397
CviAII CATG 2 cut(s) 221, 515
CviJI RGCY 9 cut(s) 59, 128, 145, 195, 259, 269, 412, 492, 590
CviKI_1 RGCY 9 cut(s) 59, 128, 145, 195, 259, 269, 412, 492, 590
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 4 cut(s) 141, 264, 423, 507
DpnI GATC 1 cut(s) 605
DpnII GATC 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 257
Eco147I AGGCCT 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 653
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 453
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRII CCWGG 2 cut(s) 195, 534
FaeI CATG 2 cut(s) 224, 518
FaqI GGGAC 1 cut(s) 612
FatI CATG 2 cut(s) 220, 514
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 2 cut(s) 210, 213
Fsp4HI GCNGC 2 cut(s) 210, 213
GlaI GCGC 1 cut(s) 525
GluI GCNGC 2 cut(s) 210, 213
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 2 cut(s) 195, 259
HapII CCGG 1 cut(s) 256
HhaI GCGC 1 cut(s) 526
Hin1II CATG 2 cut(s) 224, 518
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 4 cut(s) 187, 224, 511, 552
HpaII CCGG 1 cut(s) 256
HphI GGTGA 3 cut(s) 36, 105, 329
Hpy166II GTNNAC 4 cut(s) 478, 499, 556, 656
Hpy188I TCNGA 3 cut(s) 238, 357, 406
Hpy188III TCNNGA 4 cut(s) 221, 228, 431, 455
Hpy8I GTNNAC 4 cut(s) 478, 499, 556, 656
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 6 cut(s) 20, 51, 89, 120, 452, 456
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4V TGCA 8 cut(s) 26, 95, 209, 302, 385, 541, 625, 687
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 332
HpyF3I CTNAG 4 cut(s) 141, 264, 423, 507
Hsp92II CATG 2 cut(s) 224, 518
HspAI GCGC 1 cut(s) 524
Kzo9I GATC 1 cut(s) 603
LmnI GCTCC 1 cut(s) 258
Lsp1109I GCAGC 2 cut(s) 221, 224
LweI GCATC 4 cut(s) 35, 104, 196, 623
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 605
MboI GATC 1 cut(s) 603
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 3 cut(s) 162, 337, 638
MlyI GAGTC 1 cut(s) 561
MmeI TCCRAC 2 cut(s) 369, 447
MnlI CCTC 8 cut(s) 24, 27, 48, 93, 96, 273, 462, 563
MroXI GAANNNNTTC 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 289
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 2 cut(s) 197, 536
MvaI CCWGG 2 cut(s) 197, 536
MwoI GCNNNNNNNGC 2 cut(s) 142, 332
NdeII GATC 1 cut(s) 603
NlaIII CATG 2 cut(s) 224, 518
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 317
NspV TTCGAA 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 453
PagI TCATGA 1 cut(s) 220
PaqCI CACCTGC 2 cut(s) 31, 100
PceI AGGCCT 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 3 cut(s) 187, 224, 511
PflMI CCANNNNNTGG 1 cut(s) 662
PkrI GCNGC 2 cut(s) 211, 214
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
Psp6I CCWGG 2 cut(s) 195, 534
PspGI CCWGG 2 cut(s) 195, 534
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 653
PstI CTGCAG 1 cut(s) 387
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 289
SalI GTCGAC 1 cut(s) 554
SatI GCNGC 2 cut(s) 210, 213
Sau3AI GATC 1 cut(s) 603
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 1 cut(s) 561
ScrFI CCNGG 2 cut(s) 197, 536
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 4 cut(s) 35, 104, 196, 623
SfcI CTRYAG 1 cut(s) 383
Sfr274I CTCGAG 1 cut(s) 453
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 1 cut(s) 653
SlaI CTCGAG 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
Sse9I AATT 3 cut(s) 162, 337, 638
SseBI AGGCCT 1 cut(s) 195
StuI AGGCCT 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 195, 534
TaaI ACNGT 1 cut(s) 396
TaqI TCGA 4 cut(s) 271, 454, 529, 555
TasI AATT 3 cut(s) 162, 337, 638
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 3 cut(s) 187, 224, 511
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 2 cut(s) 209, 212
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 237
Van91I CCANNNNNTGG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 653
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 1 cut(s) 337
XhoI CTCGAG 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.