RchiOBHm_Chr4g0388601

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
3854626 .. 3858024
3399 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2013 bp
ATGAAAACCAGACATCAAGCACAAAAGCAAGAAGATACTGAAGTTCATCCTCTTGGTGAACTTCCACAAGTTACAATGGAATCGAATGAAGTAAGGGAAGAAGACGGTGAAGTGCAACCGGTTACTTTATCGAGTGATTCAGGACATGAGGAGCCAATAGAGCAAAAAAAGAAGGGAACTGATATACAAGCAGGAACTATGCAATACCATCTTGATAAGCAGGACTGTTTGAAGAAAGAGGATGAGGAAGATGGTTCAATATCTGCATCACATGCTCTAGAAGCTATAGAGTATAAGAGTTTTGAGTCAAATCAACAGGAGTTGGTTACAATTCATGCTGACCAATCTGTAGAAGTTGGAAGTGAATCATTACCAGGGAGTAAGGACTGTCTAGGACCAAGTTTTACTTCTGATTTGGAGGCGAATGGTGATGTCTTAGACACTGAGACGTTCAAAAATATGGAAGAAAGTGCTGATACTGGTACTGATCCAGCATTGGAAAGATGGGATGCCCTGTCACTGGAGCAAAAGGCCTGTGAAGGACTACTGAAGTCCTCAGAAGAGCAGTTTGAAACTAAGGATCTAGAAGAAGTTGAAAATGGATTCACCAACATAACACAAATAGCATCATATGATCTTCTTGGCTTAGAAAATAACTGCAATATGGAGCTTCCAACTGAGGTGAATTTAATTGATAGCTCAAAATCAGAACCAGAAGCCTTTCTAGTGAGTAACTCTCAACTTGAAGTTCCTCAACCTAAGGAGAAATGCATTATTCTTAAAGAAGAAATCAGACTAACAGGAAAAGAGTTGGAAAATGGAGAGAAAAAGCATTATACTAACCAAATCCAACCTAGTCTACAGTCAGGGATGGAATCAGAACCTGACTGTGACAAATCAAGTGAGCCTCAATTTGAATCTACAATGGTTGAGCCTACACATGAGAAGAGTGAAACGGTAAGTGTGATCAGTCCTTTAAGCAACAAGGTTGTTGAGGATGACAACCTAGTTCTCATGCGTCTCAATAACCAACATGAGGCTTCTGAGGACCAGTGCTACCAGGAATCAGAAAGGAAACTTGAGGTGGTTCTGGCGCTTGGAATCATTTCACCAGAGTTAACAATTCCACATTTCAGCCACAAGGAAGAGGAATTAGTAGGGAAGAGAACCGTTCAAGAAAGAGAGGATAACATGGAACCTTTACTTGCCAGTGAAATGGAAGAAACAGAAGGAACAGAACAGGATTGTTTGCCTCCAGAAAAAGATACTGTATTTGGAAATGAGACTGTTCAAAGCATCAATGACTCAATCCCAGAAGTGAAGCAAGAGAATTCAGGTGAGTTTTTGGCTACTGAAAATCCAACTATTGATTTTACAAGCTGGATAGCTGAAGCATTAGTCTCCATGAATAATTTGGAAGCTGAGATGCTTAGTCAGCAAGTTACACAACATAATGAACCACATCAAGCCGAAGCAGCAGCAGCAGCAGAATCTAAAACTTTGGTTGAAGTTGAAACATCATCTGTATCTGTAAGTTCTGGTTCTGAAACACTAGAAAATGTGGGAAGGTCCAGCACAGTGAGCACTGAATCTGATCCGGATAACTTGAATATTGTTCACGCCCAGATACAAAAATCCCCGAGCTTCAGCCTTGATCTCCAAAATGAAGCAAGGACTGAAGAATCAGATAGCACTCCATTGTTGTATCAAGATAAGGCTGAAATAGAAAGCTCAGCAAGTCAAGGTGAGAAAGTGATTACATTGGAAAGAAGTGAGTCAGAGGAGTCAAAGACACCATTTCTAGGATTCTTGAAGGAAGAGGAAGAAACTCATGTTGTTGTTGTTGCACAAAATAAACATGAGAACCACTCTCCTTCTAAGAATTCAAAAAGAAATCTGTGTGACTCAGTTACTGGAAAAGCTGCTCCAACTTCATCTAAAGGTAAAGAGAAGCGCAGAAACCGGGCTTCTCTCTTTTCCAACTGCTTGTGTTGTGCAACTGTGATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

670

Amino Acids

74.26

Weight (kDa)

4.41

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 859
AccIII TCCGGA 1 cut(s) 1597
AclWI GGATC 3 cut(s) 482, 588, 1589
AcsI RAATTY 3 cut(s) 685, 1330, 1882
AcuI CTGAAG 5 cut(s) 60, 569, 1410, 1630, 1698
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 3 cut(s) 520, 1036, 1802
AgeI ACCGGT 1 cut(s) 118
AjnI CCWGG 2 cut(s) 373, 1059
AjuI GAANNNNNNNTTGG 2 cut(s) 391, 423
AluBI AGCT 9 cut(s) 284, 670, 699, 1380, 1388, 1421, 1644, 1731, 1922
AluI AGCT 9 cut(s) 284, 670, 699, 1380, 1388, 1421, 1644, 1731, 1922
Alw21I GWGCWC 1 cut(s) 1586
Alw26I GTCTC 4 cut(s) 440, 1025, 1277, 1405
AlwI GGATC 3 cut(s) 482, 588, 1589
AlwNI CAGNNNCTG 2 cut(s) 884, 1913
Ama87I CYCGRG 1 cut(s) 1639
Aor13HI TCCGGA 1 cut(s) 1597
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 5 cut(s) 1475, 1478, 1481, 1484, 1922
ApoI RAATTY 3 cut(s) 685, 1330, 1882
AsiGI ACCGGT 1 cut(s) 118
Asp700I GAANNNNTTC 2 cut(s) 720, 1105
AspLEI GCGC 2 cut(s) 1096, 1956
AspS9I GGNCC 3 cut(s) 395, 1048, 1569
AsuC2I CCSGG 1 cut(s) 1964
AsuHPI GGTGA 8 cut(s) 68, 119, 440, 598, 694, 1101, 1349, 1757
AvaI CYCGRG 1 cut(s) 1639
AvaII GGWCC 3 cut(s) 395, 1048, 1569
AxyI CCTNAGG 1 cut(s) 759
BaeI ACNNNNGTAYC 2 cut(s) 27, 60
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 1586
BbvI GCAGC 5 cut(s) 1487, 1490, 1493, 1496, 1909
BccI CCATC 4 cut(s) 216, 245, 498, 865
BciT130I CCWGG 2 cut(s) 375, 1061
BclI TGATCA 2 cut(s) 966, 2004
BcnI CCSGG 1 cut(s) 1964
BcoDI GTCTC 4 cut(s) 440, 1025, 1277, 1405
BfaI CTAG 8 cut(s) 278, 392, 584, 725, 855, 1007, 1553, 1802
BfmI CTRYAG 3 cut(s) 285, 348, 860
BfoI RGCGCY 1 cut(s) 1097
BisI GCNGC 5 cut(s) 1476, 1479, 1482, 1485, 1923
BlpI GCTNAGC 1 cut(s) 1732
BlsI GCNGC 5 cut(s) 1477, 1480, 1483, 1486, 1924
Bme1390I CCNGG 3 cut(s) 375, 1061, 1964
Bme18I GGWCC 3 cut(s) 395, 1048, 1569
BmeT110I CYCGRG 1 cut(s) 1639
BmgT120I GGNCC 3 cut(s) 395, 1048, 1569
BmiI GGNNCC 2 cut(s) 153, 1197
BmrFI CCNGG 3 cut(s) 375, 1061, 1964
BmsI GCATC 5 cut(s) 275, 499, 635, 1305, 1416
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 4 cut(s) 721, 753, 1853, 1885
BpmI CTGGAG 2 cut(s) 542, 1239
Bpu1102I GCTNAGC 1 cut(s) 1732
BpuEI CTTGAG 1 cut(s) 1100
BpuMI CCSGG 1 cut(s) 1964
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 2 cut(s) 118, 1597
Bsc4I CCNNNNNNNGG 3 cut(s) 520, 1036, 1802
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 5 cut(s) 484, 525, 1051, 1209, 1918
Bse21I CCTNAGG 1 cut(s) 759
BseAI TCCGGA 1 cut(s) 1597
BseBI CCWGG 2 cut(s) 375, 1061
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 5 cut(s) 46, 247, 514, 876, 1003
BseLI CCNNNNNNNGG 3 cut(s) 520, 1036, 1802
BseMII CTCAG 7 cut(s) 435, 570, 669, 1035, 1413, 1746, 1920
BseNI ACTGG 5 cut(s) 484, 525, 1051, 1209, 1918
BseRI GAGGAG 2 cut(s) 164, 1796
BseXI GCAGC 5 cut(s) 1487, 1490, 1493, 1496, 1909
BshFI GGCC 1 cut(s) 533
BshTI ACCGGT 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 1586
BsiHKCI CYCGRG 1 cut(s) 1639
BsiSI CCGG 3 cut(s) 119, 1598, 1963
BslI CCNNNNNNNGG 3 cut(s) 520, 1036, 1802
BsmAI GTCTC 4 cut(s) 440, 1025, 1277, 1405
BsmBI CGTCTC 2 cut(s) 440, 1025
BsnI GGCC 1 cut(s) 533
BsoBI CYCGRG 1 cut(s) 1639
Bsp1286I GDGCHC 1 cut(s) 1586
Bsp13I TCCGGA 1 cut(s) 1597
Bsp143I GATC 7 cut(s) 487, 580, 634, 966, 1594, 1654, 2004
Bsp1720I GCTNAGC 1 cut(s) 1732
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 7 cut(s) 436, 569, 670, 1036, 1414, 1745, 1919
BspEI TCCGGA 1 cut(s) 1597
BspLI GGNNCC 2 cut(s) 153, 1197
BspPI GGATC 3 cut(s) 482, 588, 1589
BspQI GCTCTTC 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 5 cut(s) 484, 525, 1051, 1209, 1918
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 7 cut(s) 487, 580, 634, 966, 1594, 1654, 2004
Bst2UI CCWGG 2 cut(s) 375, 1061
Bst6I CTCTTC 5 cut(s) 555, 941, 1140, 1157, 1812
BstAPI GCANNNNNTGC 1 cut(s) 272
BstF5I GGATG 5 cut(s) 46, 247, 514, 876, 1003
BstH2I RGCGCY 1 cut(s) 1097
BstHHI GCGC 2 cut(s) 1096, 1956
BstKTI GATC 7 cut(s) 490, 583, 637, 969, 1597, 1657, 2007
BstMAI GTCTC 4 cut(s) 440, 1025, 1277, 1405
BstMBI GATC 7 cut(s) 487, 580, 634, 966, 1594, 1654, 2004
BstMWI GCNNNNNNNGC 8 cut(s) 160, 272, 281, 1435, 1475, 1481, 1484, 1581
BstNI CCWGG 2 cut(s) 375, 1061
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 373, 1059, 1962
BstSFI CTRYAG 3 cut(s) 285, 348, 860
BstV1I GCAGC 5 cut(s) 1487, 1490, 1493, 1496, 1909
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 580
BstXI CCANNNNNNTGG 1 cut(s) 1216
BstYI RGATCY 1 cut(s) 580
Bsu36I CCTNAGG 1 cut(s) 759
BsuRI GGCC 1 cut(s) 533
BtsCI GGATG 5 cut(s) 46, 247, 514, 876, 1003
BtsIMutI CAGTG 6 cut(s) 441, 518, 1058, 1216, 1584, 1584
CaiI CAGNNNCTG 2 cut(s) 884, 1913
CfoI GCGC 2 cut(s) 1096, 1956
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 3 cut(s) 395, 1048, 1569
CseI GACGC 1 cut(s) 1007
Csp6I GTAC 1 cut(s) 483
CspAI ACCGGT 1 cut(s) 118
CviQI GTAC 1 cut(s) 483
DpnI GATC 7 cut(s) 489, 582, 636, 968, 1596, 1656, 2006
DpnII GATC 7 cut(s) 487, 580, 634, 966, 1594, 1654, 2004
Eam1104I CTCTTC 5 cut(s) 555, 941, 1140, 1157, 1812
EarI CTCTTC 5 cut(s) 555, 941, 1140, 1157, 1812
Eco147I AGGCCT 1 cut(s) 533
Eco47I GGWCC 3 cut(s) 395, 1048, 1569
Eco57I CTGAAG 5 cut(s) 60, 569, 1410, 1630, 1698
Eco81I CCTNAGG 1 cut(s) 759
Eco88I CYCGRG 1 cut(s) 1639
EcoRI GAATTC 2 cut(s) 1330, 1882
EcoRII CCWGG 2 cut(s) 373, 1059
EcoT22I ATGCAT 1 cut(s) 773
Esp3I CGTCTC 2 cut(s) 440, 1025
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FauNDI CATATG 1 cut(s) 631
FbaI TGATCA 2 cut(s) 966, 2004
FblI GTMKAC 1 cut(s) 859
Fnu4HI GCNGC 5 cut(s) 1476, 1479, 1482, 1485, 1923
FokI GGATG 5 cut(s) 33, 254, 521, 883, 1010
Fsp4HI GCNGC 5 cut(s) 1476, 1479, 1482, 1485, 1923
FspBI CTAG 8 cut(s) 278, 392, 584, 725, 855, 1007, 1553, 1802
GlaI GCGC 2 cut(s) 1095, 1955
GluI GCNGC 5 cut(s) 1476, 1479, 1482, 1485, 1923
GsuI CTGGAG 2 cut(s) 542, 1239
HaeII RGCGCY 1 cut(s) 1097
HaeIII GGCC 1 cut(s) 533
HapII CCGG 3 cut(s) 119, 1598, 1963
HgaI GACGC 1 cut(s) 1007
HhaI GCGC 2 cut(s) 1096, 1956
Hin6I GCGC 2 cut(s) 1094, 1954
HinP1I GCGC 2 cut(s) 1094, 1954
HincII GTYRAC 1 cut(s) 1119
HindII GTYRAC 1 cut(s) 1119
HpaI GTTAAC 1 cut(s) 1119
HpaII CCGG 3 cut(s) 119, 1598, 1963
HphI GGTGA 8 cut(s) 68, 119, 440, 598, 694, 1101, 1349, 1757
Hpy166II GTNNAC 4 cut(s) 59, 860, 1119, 1618
Hpy188III TCNNGA 9 cut(s) 141, 212, 278, 584, 1175, 1256, 1598, 1709, 1810
Hpy8I GTNNAC 4 cut(s) 59, 860, 1119, 1618
HpyAV CCTTC 6 cut(s) 166, 533, 1223, 1560, 1807, 1884
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 7 cut(s) 115, 202, 266, 660, 771, 1847, 1997
HpyF10VI GCNNNNNNNGC 8 cut(s) 160, 272, 281, 1435, 1475, 1481, 1484, 1581
HpySE526I ACGT 1 cut(s) 449
HspAI GCGC 2 cut(s) 1094, 1954
Kpn2I TCCGGA 1 cut(s) 1597
Ksp22I TGATCA 2 cut(s) 966, 2004
KspAI GTTAAC 1 cut(s) 1119
Kzo9I GATC 7 cut(s) 487, 580, 634, 966, 1594, 1654, 2004
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 4 cut(s) 151, 523, 667, 1930
Lsp1109I GCAGC 5 cut(s) 1487, 1490, 1493, 1496, 1909
LweI GCATC 5 cut(s) 275, 499, 635, 1305, 1416
MaeI CTAG 8 cut(s) 278, 392, 584, 725, 855, 1007, 1553, 1802
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 9 cut(s) 70, 121, 325, 516, 731, 890, 1441, 1901, 1909
MalI GATC 7 cut(s) 489, 582, 636, 968, 1596, 1656, 2006
MboI GATC 7 cut(s) 487, 580, 634, 966, 1594, 1654, 2004
MfeI CAATTG 1 cut(s) 2008
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 1586
MlyI GAGTC 5 cut(s) 314, 1298, 1784, 1793, 1898
MmeI TCCRAC 7 cut(s) 337, 698, 792, 874, 1385, 1952, 2004
Mph1103I ATGCAT 1 cut(s) 773
MroI TCCGGA 1 cut(s) 1597
MroXI GAANNNNTTC 2 cut(s) 720, 1105
MseI TTAA 4 cut(s) 689, 780, 977, 1118
MspI CCGG 3 cut(s) 119, 1598, 1963
MspR9I CCNGG 3 cut(s) 375, 1061, 1964
MunI CAATTG 1 cut(s) 2008
MvaI CCWGG 2 cut(s) 375, 1061
MwoI GCNNNNNNNGC 8 cut(s) 160, 272, 281, 1435, 1475, 1481, 1484, 1581
NciI CCSGG 1 cut(s) 1964
NdeI CATATG 1 cut(s) 631
NdeII GATC 7 cut(s) 487, 580, 634, 966, 1594, 1654, 2004
NlaIV GGNNCC 2 cut(s) 153, 1197
NmuCI GTSAC 3 cut(s) 516, 890, 1901
NsiI ATGCAT 1 cut(s) 773
NspI RCATGY 1 cut(s) 275
PceI AGGCCT 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 555
PdmI GAANNNNTTC 2 cut(s) 720, 1105
PinAI ACCGGT 1 cut(s) 118
PkrI GCNGC 5 cut(s) 1477, 1480, 1483, 1486, 1924
PleI GAGTC 5 cut(s) 313, 1298, 1783, 1792, 1898
PpsI GAGTC 5 cut(s) 313, 1298, 1783, 1792, 1898
Psp6I CCWGG 2 cut(s) 373, 1059
PspGI CCWGG 2 cut(s) 373, 1059
PspN4I GGNNCC 2 cut(s) 153, 1197
PspPI GGNCC 3 cut(s) 395, 1048, 1569
PstNI CAGNNNCTG 2 cut(s) 884, 1913
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 4 cut(s) 689, 780, 977, 1118
SatI GCNGC 5 cut(s) 1476, 1479, 1482, 1485, 1923
Sau3AI GATC 7 cut(s) 487, 580, 634, 966, 1594, 1654, 2004
Sau96I GGNCC 3 cut(s) 395, 1048, 1569
SchI GAGTC 5 cut(s) 314, 1298, 1784, 1793, 1898
ScrFI CCNGG 3 cut(s) 375, 1061, 1964
SduI GDGCHC 1 cut(s) 1586
SfaNI GCATC 5 cut(s) 275, 499, 635, 1305, 1416
SfcI CTRYAG 3 cut(s) 285, 348, 860
SinI GGWCC 3 cut(s) 395, 1048, 1569
SmlI CTYRAG 1 cut(s) 1079
SmoI CTYRAG 1 cut(s) 1079
SseBI AGGCCT 1 cut(s) 533
SspI AATATT 1 cut(s) 1612
SspMI CTAG 8 cut(s) 278, 392, 584, 725, 855, 1007, 1553, 1802
StuI AGGCCT 1 cut(s) 533
StyD4I CCNGG 3 cut(s) 373, 1059, 1962
TaiI ACGT 1 cut(s) 452
TaqI TCGA 2 cut(s) 83, 131
Tru1I TTAA 4 cut(s) 689, 780, 977, 1118
Tru9I TTAA 4 cut(s) 689, 780, 977, 1118
TscAI CASTG 6 cut(s) 448, 525, 1058, 1216, 1584, 1591
TseFI GTSAC 3 cut(s) 516, 890, 1901
TseI GCWGC 5 cut(s) 1475, 1478, 1481, 1484, 1922
Tsp45I GTSAC 3 cut(s) 516, 890, 1901
TspDTI ATGAA 8 cut(s) 17, 35, 102, 323, 1421, 1470, 1680, 1923
TspRI CASTG 6 cut(s) 448, 525, 1058, 1216, 1584, 1591
VpaK11BI GGWCC 3 cut(s) 395, 1048, 1569
XapI RAATTY 3 cut(s) 685, 1330, 1882
XbaI TCTAGA 2 cut(s) 277, 583
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 1411
XmiI GTMKAC 1 cut(s) 859
XmnI GAANNNNTTC 2 cut(s) 720, 1105
XspI CTAG 8 cut(s) 278, 392, 584, 725, 855, 1007, 1553, 1802
Zsp2I ATGCAT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.