Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018463

Physical Location & Seq

Genomic Coordinates Reverse (-)

6348020 .. 6349276

Gene Structure 1257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAGGTGATCCTCGACGGCAGCCTTCCCTCGGAAATTCTTGTCGAGACACTGTCTAGGCTTCCTTTCCAATCACTACGACAATTTCGTTTTGTATGCAAGTCATGGCGTACTTTAATATCCAGTTCATATTTTCTCATCAAACACACCAGGGTCACTGTTGGAGATAGAAGCAGGTTAAAGTTCCTATATGGATTAGATCCACCCCGATTCATACACTATGAAGCATTATTGAACAAGGATGGTCCTGTTGCACCTAGGAAACTTGTTGCCCCTATGTGCGTTAAAGAAGATGATAATCGATATAGTTACCGCCTTATAGGTTCCTGCAATGGCTTGATATGTCTATATTGTGAAGATACTCACGAAGATACCACCGAGGAAGAAGATACCACCGACGAAGTTATACAACTTCATCTGTGCTCCGTCGACTTGGTCGTATGGAACCCTTGCACTAGAGATGCATGCAGGTTATCAGGACCGACTCTTCCGACTCTTTTAGGAAGCGTATTTGTAGGAGCTTTTTCGGGATTTGGTTATGATTCCACCACCCAAGATTACAAGGTCATAGTAGAGTTCACAGATTCTGATCCTGATATAAGTGCAAGTGCAAGTGCAAGTCCAACTCGAATTGCCATCTTCTCTCTGAAAACGAGTTCATGGAGACTCGTTGAATGCCAAAAGCATTACGAATTGTTTGGGAACGGGTGGTTAGTAAACGGAACTCTACATTGGTTGGAGACTAAATATCGTGAGAAACGTTGTCCTTTAACATCGCAAAACATCTGTTCAAGAATCATCTCTTTTGATCTAGCCAAAGAGACATTTCAGGAAGTCGCTACATTAACCAATATTTTCGACAAAGAATGTGATCATGAGCTCTCTGTGGGAATTGGAACGACAATGGGAAATTGTCTCTTTGTGTATGTTCACGATCGGCACAATCATAATTACAATGTGGGTTTTGCCTATACAATATGGGTGATGAAGGAATATGGGATCGAGAAATCTTGGACTAAACTTGTACAGATTCCTTCAGATATGTTTCATGGGGGTTTTACATGTTATCCGAAGCCTAAATGGATGTTAGAGAATGACGAAGTTTTGATAATCTTGGAAGAGGATGATATGTATGATGAGGTGGCATTATATAATCCCAAGGAAAATACATTGAGGACTGTTCTTCAGGATTATTGCTTTTGGTGGGGTTCGACATTTTACACTGACACTTTAGTTTCACCTAAAAATATCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

418

Amino Acids

48.13

Weight (kDa)

5.17

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 47	5.4e-11	F-box domain
F-box-like	PF12937	8 - 43	4.5e-08	F-box-like
FBA_3	PF08268	105 - 394	2.1e-15	F-box associated beta propeller domain
FBA_1	PF07734	140 - 382	3.7e-20	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018463)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38601 FvH4_7g02841
rosa_chinensis	RchiOBHm_Chr4g0391071
rosa_roxburghii	Rroxscaffold_2G00095950 Rroxscaffold_2G00096000 Rroxscaffold_5G00337600 Rroxscaffold_5G00337640
rosa_rugosa	Rorug02G0430800 Rorug03G0338800
rosa_samantha	Rh4BG037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	165, 459
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	1 cut(s)	313
AclI	AACGTT	1 cut(s)	760
AclWI	GGATC	4 cut(s)	4, 194, 584, 1007
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	2 cut(s)	1020, 1169
AfaI	GTAC	2 cut(s)	112, 1026
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	1061
AgsI	TTSAA	3 cut(s)	235, 674, 792
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	715, 747
AluBI	AGCT	2 cut(s)	521, 880
AluI	AGCT	2 cut(s)	521, 880
Alw21I	GWGCWC	2 cut(s)	425, 882
Alw26I	GTCTC	5 cut(s)	41, 658, 734, 815, 920
AlwI	GGATC	4 cut(s)	4, 194, 584, 1007
AlwNI	CAGNNNCTG	1 cut(s)	587
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	36
AspA2I	CCTAGG	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	245, 479
AsuHPI	GGTGA	3 cut(s)	19, 994, 1230
AvaII	GGWCC	2 cut(s)	245, 479
AvrII	CCTAGG	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	882
Bbv12I	GWGCWC	2 cut(s)	425, 882
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	2 cut(s)	236, 644
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	151
BclI	TGATCA	1 cut(s)	871
BcoDI	GTCTC	5 cut(s)	41, 658, 734, 815, 920
BfaI	CTAG	4 cut(s)	57, 258, 456, 812
BfuAI	ACCTGC	2 cut(s)	165, 459
BisI	GCNGC	1 cut(s)	22
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	2 cut(s)	245, 479
BmgT120I	GGNCC	2 cut(s)	245, 479
BmiI	GGNNCC	2 cut(s)	325, 446
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	451
Bsa29I	ATCGAT	1 cut(s)	301
BsaBI	GATNNNNATC	2 cut(s)	297, 588
BsaJI	CCNNGG	5 cut(s)	30, 150, 257, 378, 1158
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	2 cut(s)	297, 588
BseBI	CCWGG	1 cut(s)	151
BseCI	ATCGAT	1 cut(s)	301
BseDI	CCNNGG	5 cut(s)	30, 150, 257, 378, 1158
BseGI	GGATG	3 cut(s)	247, 1089, 1129
BseJI	GATNNNNATC	2 cut(s)	297, 588
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	937
BshVI	ATCGAT	1 cut(s)	301
BsiEI	CGRYCG	1 cut(s)	937
BsiHKAI	GWGCWC	2 cut(s)	425, 882
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	5 cut(s)	41, 658, 734, 815, 920
BsmI	GAATGC	1 cut(s)	680
Bsp1286I	GDGCHC	2 cut(s)	425, 882
Bsp1407I	TGTACA	1 cut(s)	1024
Bsp143I	GATC	7 cut(s)	9, 199, 589, 808, 871, 934, 999
BspACI	CCGC	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	2 cut(s)	325, 446
BspMI	ACCTGC	2 cut(s)	165, 459
BspPI	GGATC	4 cut(s)	4, 194, 584, 1007
BsrDI	GCAATG	1 cut(s)	337
BsrGI	TGTACA	1 cut(s)	1024
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	5 cut(s)	30, 150, 257, 378, 1158
BssMI	GATC	7 cut(s)	9, 199, 589, 808, 871, 934, 999
BssT1I	CCWWGG	2 cut(s)	257, 1158
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	3 cut(s)	54, 160, 1180
Bst6I	CTCTTC	2 cut(s)	492, 1113
BstAUI	TGTACA	1 cut(s)	1024
BstC8I	GCNNGC	1 cut(s)	466
BstF5I	GGATG	3 cut(s)	247, 1089, 1129
BstKTI	GATC	7 cut(s)	12, 202, 592, 811, 874, 937, 1002
BstMAI	GTCTC	5 cut(s)	41, 658, 734, 815, 920
BstMBI	GATC	7 cut(s)	9, 199, 589, 808, 871, 934, 999
BstMCI	CGRYCG	1 cut(s)	937
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	2 cut(s)	468, 1065
BstSCI	CCNGG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	301
BsuTUI	ATCGAT	1 cut(s)	301
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	3 cut(s)	247, 1089, 1129
BtsIMutI	CAGTG	3 cut(s)	50, 156, 1221
BveI	ACCTGC	2 cut(s)	165, 459
Cac8I	GCNNGC	1 cut(s)	466
CaiI	CAGNNNCTG	1 cut(s)	587
CciI	TCATGA	1 cut(s)	874
Cfr13I	GGNCC	2 cut(s)	245, 479
ClaI	ATCGAT	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	111, 1025
CviAII	CATG	6 cut(s)	105, 465, 660, 875, 1049, 1062
CviJI	RGCY	7 cut(s)	24, 61, 336, 521, 815, 880, 1075
CviKI_1	RGCY	7 cut(s)	24, 61, 336, 521, 815, 880, 1075
CviQI	GTAC	2 cut(s)	111, 1025
DpnI	GATC	7 cut(s)	11, 201, 591, 810, 873, 936, 1001
DpnII	GATC	7 cut(s)	9, 199, 589, 808, 871, 934, 999
Eam1104I	CTCTTC	2 cut(s)	492, 1113
EarI	CTCTTC	2 cut(s)	492, 1113
Ecl136II	GAGCTC	1 cut(s)	880
Eco130I	CCWWGG	2 cut(s)	257, 1158
Eco24I	GRGCYC	1 cut(s)	882
Eco47I	GGWCC	2 cut(s)	245, 479
Eco53kI	GAGCTC	1 cut(s)	880
Eco57I	CTGAAG	2 cut(s)	1020, 1169
EcoICRI	GAGCTC	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	257, 1158
EcoT22I	ATGCAT	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	882
ErhI	CCWWGG	2 cut(s)	257, 1158
FaeI	CATG	6 cut(s)	108, 468, 663, 878, 1052, 1065
FatI	CATG	6 cut(s)	104, 464, 659, 874, 1048, 1061
FbaI	TGATCA	1 cut(s)	871
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	3 cut(s)	254, 1096, 1136
FriOI	GRGCYC	1 cut(s)	882
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	4 cut(s)	57, 258, 456, 812
GluI	GCNGC	1 cut(s)	22
Hin1II	CATG	6 cut(s)	108, 468, 663, 878, 1052, 1065
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	8 cut(s)	210, 484, 493, 542, 584, 666, 795, 1030
HphI	GGTGA	3 cut(s)	19, 994, 1230
Hpy166II	GTNNAC	4 cut(s)	430, 579, 718, 931
Hpy188I	TCNGA	6 cut(s)	34, 492, 589, 648, 1039, 1071
Hpy8I	GTNNAC	4 cut(s)	430, 579, 718, 931
Hpy99I	CGWCG	3 cut(s)	20, 401, 431
HpyAV	CCTTC	3 cut(s)	35, 982, 1044
HpyCH4III	ACNGT	3 cut(s)	54, 160, 1180
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	9 cut(s)	99, 254, 330, 453, 464, 468, 605, 611, 617
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	6 cut(s)	108, 468, 663, 878, 1052, 1065
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	7 cut(s)	9, 199, 589, 808, 871, 934, 999
LmnI	GCTCC	2 cut(s)	428, 518
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	4 cut(s)	57, 258, 456, 812
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	2 cut(s)	154, 308
MalI	GATC	7 cut(s)	11, 201, 591, 810, 873, 936, 1001
MboI	GATC	7 cut(s)	9, 199, 589, 808, 871, 934, 999
MboII	GAAGA	9 cut(s)	302, 368, 380, 395, 398, 479, 631, 1130, 1175
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	425, 882
MluCI	AATT	7 cut(s)	36, 83, 630, 692, 891, 910, 949
MlyI	GAGTC	3 cut(s)	478, 487, 660
MmeI	TCCRAC	4 cut(s)	142, 515, 647, 717
MnlI	CCTC	6 cut(s)	23, 40, 373, 1114, 1132, 1167
Mph1103I	ATGCAT	1 cut(s)	466
MseI	TTAA	5 cut(s)	116, 179, 285, 770, 845
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	151
NdeII	GATC	7 cut(s)	9, 199, 589, 808, 871, 934, 999
NlaIII	CATG	6 cut(s)	108, 468, 663, 878, 1052, 1065
NlaIV	GGNNCC	2 cut(s)	325, 446
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	2 cut(s)	468, 1065
PaeI	GCATGC	1 cut(s)	468
PagI	TCATGA	1 cut(s)	874
PciI	ACATGT	1 cut(s)	1061
PcsI	WCGNNNNNNNCGW	3 cut(s)	85, 435, 757
PctI	GAATGC	1 cut(s)	680
PfeI	GAWTC	5 cut(s)	210, 542, 584, 795, 1030
PflFI	GACNNNGTC	2 cut(s)	52, 434
PkrI	GCNGC	1 cut(s)	23
Ple19I	CGATCG	1 cut(s)	937
PleI	GAGTC	3 cut(s)	478, 487, 660
PpsI	GAGTC	3 cut(s)	478, 487, 660
PscI	ACATGT	1 cut(s)	1061
Psp124BI	GAGCTC	1 cut(s)	882
Psp1406I	AACGTT	1 cut(s)	760
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	325, 446
PspPI	GGNCC	2 cut(s)	245, 479
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	199
PsyI	GACNNNGTC	2 cut(s)	52, 434
PvuI	CGATCG	1 cut(s)	937
RsaI	GTAC	2 cut(s)	112, 1026
RsaNI	GTAC	2 cut(s)	111, 1025
SacI	GAGCTC	1 cut(s)	882
SalI	GTCGAC	1 cut(s)	428
SaqAI	TTAA	5 cut(s)	116, 179, 285, 770, 845
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	7 cut(s)	9, 199, 589, 808, 871, 934, 999
Sau96I	GGNCC	2 cut(s)	245, 479
SchI	GAGTC	3 cut(s)	478, 487, 660
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	425, 882
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	2 cut(s)	245, 479
SphI	GCATGC	1 cut(s)	468
Sse9I	AATT	7 cut(s)	36, 83, 630, 692, 891, 910, 949
SsiI	CCGC	1 cut(s)	313
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	4 cut(s)	57, 258, 456, 812
SstI	GAGCTC	1 cut(s)	882
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	257, 1158
TaaI	ACNGT	3 cut(s)	54, 160, 1180
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	8 cut(s)	15, 45, 301, 429, 628, 858, 1002, 1211
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	7 cut(s)	36, 83, 630, 692, 891, 910, 949
TatI	WGTACW	1 cut(s)	1024
TfiI	GAWTC	5 cut(s)	210, 542, 584, 795, 1030
Tru1I	TTAA	5 cut(s)	116, 179, 285, 770, 845
Tru9I	TTAA	5 cut(s)	116, 179, 285, 770, 845
TscAI	CASTG	3 cut(s)	57, 163, 1228
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	7 cut(s)	117, 202, 237, 404, 648, 1001, 1037
TspGWI	ACGGA	2 cut(s)	415, 735
TspRI	CASTG	3 cut(s)	57, 163, 1228
Tth111I	GACNNNGTC	2 cut(s)	52, 434
VpaK11BI	GGWCC	2 cut(s)	245, 479
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	2 cut(s)	468, 1065
XmaJI	CCTAGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	4 cut(s)	57, 258, 456, 812
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.