RchiOBHm_Chr4g0393891

ENTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013320
Physical Location & Seq
Forward (+)
9468399 .. 9470581
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1032 bp
ATGTTCCTGGACCATTTCAAAAAGCAGGCCTCTCGTTTTTTACAAGAGAGATACAAAACTGCTAGGCTGACCTTCACTGATGTTACTCCTGCCGAACTGTGGGCTGAGGAGGCAACAAATGGTGAACCATGTAGCCCTGATGCTAAGACAATGACTAAAATAGCTGCTGCCTCCTTTGAGATGGAGGACTATTGGAGAATAGTTGACATCCTTCACAGAAAGTTATATAACATTGACTGGAAAGAATGGAGGCAATCCTACAAAGCATTGGTACTTCTGGAGTTTTTATTAACACATGGCCCTGAAGACTTTGCTGAAGAATTTCAAGGTGACAGTGAAGTCATCCAAGAGCTGGGATCATTTAAGTACATTGACGACAACGGATTCAATTGGGGTTCTAGCATGCAAAAGAAATCGGACCAAATACTAATCCTTCTAAGAGGGGGGCGGTCGACGCTGAGAGAAGCACGTTTCAAAGCTCTCAAAGTAACAAATGAAATCCAAGGCTTTAGAGGTTCAGCGTCTTCTCCTTCACCCTCAACTCCTTCCTCTGCCTACTCTGAAACACCAAGAGCTTCATCCTTTAGTTCATTTTCTACCACAAGTTCTGTATGGAATGAATTGAACAATGAGCTTAGCAAATTTCATCAACCATCGACAACTAAATCAGAAGCCATGGAAAGCTATTCACAGGGTGGACTGCGAGACACTGATGATGATCATGATCATTACAAGAATACTAGCAATTTCCCCGCACCAAGTGAGAGTAGGGAAGGATCACACCTTTGGAATTGCCCTCCAATTGATGAAAAAGGTTCATTACTTGAATCCGAAGAAGAAGACAATGAGGATGATGACAAATATTATGAAAAGGAGGATGGTATTTTAAGTGGAATTTACTCTAAGCTGGTTACCCTTAGTCCTACAAGAGGAAATGTACCTCATGGTAATATTAGGTTTAGGAGTGTTTCTGATGTAGGGAGGGAGCTGAGGAAGAAAAAGCTTGATCGCCAATCTTCGTTTTGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ENTH

Protein Analysis

343

Amino Acids

39.26

Weight (kDa)

5.22

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 29 - 147 4.5e-30 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23350 AT3G23350
fragaria_vesca FvH4_4g03870
malus_domestica MD13G1215900.v1.1
prunus_persica Prupe.1G041000_v2.0.a1 Prupe.1G041000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393891
rosa_laevigata RLG00000009729
rosa_multiflora Rmu_sc0000928.1_g000029
rosa_roxburghii Rroxscaffold_5G00338970
rosa_rugosa Rorug03G0371200 Rorug03G0371200
rosa_samantha Rh4AG049300 Rh4BG045600 Rh4BG045700 Rh4CG052800 Rh4DG046300
rosa_wichuraiana Rw4G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 352
AccI GTMKAC 1 cut(s) 452
AciI CCGC 2 cut(s) 448, 753
AclWI GGATC 2 cut(s) 364, 784
AcsI RAATTY 3 cut(s) 320, 641, 894
AcuI CTGAAG 2 cut(s) 324, 336
AdeI CACNNNGTG 2 cut(s) 695, 761
AfaI GTAC 4 cut(s) 273, 368, 939, 1028
AfiI CCNNNNNNNGG 3 cut(s) 99, 352, 929
AgsI TTSAA 6 cut(s) 19, 326, 388, 475, 625, 827
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 9 cut(s) 164, 352, 479, 575, 634, 684, 907, 988, 1003
AluI AGCT 9 cut(s) 164, 352, 479, 575, 634, 684, 907, 988, 1003
Alw26I GTCTC 1 cut(s) 699
AlwI GGATC 2 cut(s) 364, 784
AoxI GGCC 2 cut(s) 27, 298
ApeKI GCWGC 2 cut(s) 164, 167
ApoI RAATTY 3 cut(s) 320, 641, 894
Asp700I GAANNNNTTC 1 cut(s) 321
AspS9I GGNCC 3 cut(s) 10, 299, 418
AsuHPI GGTGA 3 cut(s) 134, 341, 525
AvaII GGWCC 2 cut(s) 10, 418
BbsI GAAGAC 3 cut(s) 312, 516, 846
BbvCI CCTCAGC 2 cut(s) 105, 989
BbvI GCAGC 2 cut(s) 151, 154
BccI CCATC 3 cut(s) 175, 661, 872
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 8
BclI TGATCA 2 cut(s) 718, 724
BcoDI GTCTC 1 cut(s) 699
BfaI CTAG 3 cut(s) 63, 399, 741
BisI GCNGC 2 cut(s) 165, 168
BlpI GCTNAGC 1 cut(s) 635
BlsI GCNGC 2 cut(s) 166, 169
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 2 cut(s) 10, 418
BmgT120I GGNCC 3 cut(s) 10, 299, 418
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 3 cut(s) 312, 516, 846
BpmI CTGGAG 1 cut(s) 299
Bpu10I CCTNAGC 2 cut(s) 105, 989
Bpu1102I GCTNAGC 1 cut(s) 635
BsaBI GATNNNNATC 2 cut(s) 717, 723
BsaJI CCNNGG 2 cut(s) 502, 675
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 352, 929
Bse1I ACTGG 1 cut(s) 242
Bse8I GATNNNNATC 2 cut(s) 717, 723
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 502, 675
BseGI GGATG 5 cut(s) 207, 342, 578, 856, 883
BseJI GATNNNNATC 2 cut(s) 717, 723
BseLI CCNNNNNNNGG 3 cut(s) 99, 352, 929
BseMII CTCAG 3 cut(s) 96, 449, 980
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 151, 154
BseYI CCCAGC 1 cut(s) 352
Bsh1285I CGRYCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 29, 300
BsiEI CGRYCG 1 cut(s) 452
BslI CCNNNNNNNGG 3 cut(s) 99, 352, 929
BsmAI GTCTC 1 cut(s) 699
BsnI GGCC 2 cut(s) 29, 300
Bsp143I GATC 5 cut(s) 356, 718, 724, 776, 1006
Bsp1720I GCTNAGC 1 cut(s) 635
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 2 cut(s) 448, 753
BspANI GGCC 2 cut(s) 29, 300
BspCNI CTCAG 3 cut(s) 97, 450, 981
BspHI TCATGA 1 cut(s) 721
BspPI GGATC 2 cut(s) 364, 784
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 502, 675
BssMI GATC 5 cut(s) 356, 718, 724, 776, 1006
BssT1I CCWWGG 2 cut(s) 502, 675
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 99, 335
BstC8I GCNNGC 2 cut(s) 27, 404
BstDEI CTNAG 8 cut(s) 105, 144, 437, 458, 635, 903, 917, 989
BstDSI CCRYGG 1 cut(s) 675
BstEII GGTNACC 1 cut(s) 910
BstENI CCTNNNNNAGG 1 cut(s) 927
BstF5I GGATG 5 cut(s) 207, 342, 578, 856, 883
BstKTI GATC 5 cut(s) 359, 721, 727, 779, 1009
BstMAI GTCTC 1 cut(s) 699
BstMBI GATC 5 cut(s) 356, 718, 724, 776, 1006
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 2 cut(s) 110, 454
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 406
BstPI GGTNACC 1 cut(s) 910
BstSCI CCNGG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 151, 154
BstV2I GAAGAC 3 cut(s) 312, 516, 846
BsuRI GGCC 2 cut(s) 29, 300
BtgI CCRYGG 1 cut(s) 675
BtsCI GGATG 5 cut(s) 207, 342, 578, 856, 883
BtsIMutI CAGTG 3 cut(s) 75, 340, 708
Cac8I GCNNGC 2 cut(s) 27, 404
CciI TCATGA 1 cut(s) 721
Cfr13I GGNCC 3 cut(s) 10, 299, 418
CseI GACGC 2 cut(s) 463, 510
Csp6I GTAC 4 cut(s) 272, 367, 938, 1027
CviAII CATG 6 cut(s) 129, 296, 403, 676, 722, 944
CviQI GTAC 4 cut(s) 272, 367, 938, 1027
DdeI CTNAG 8 cut(s) 105, 144, 437, 458, 635, 903, 917, 989
DpnI GATC 5 cut(s) 358, 720, 726, 778, 1008
DpnII GATC 5 cut(s) 356, 718, 724, 776, 1006
DraIII CACNNNGTG 2 cut(s) 695, 761
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
Eco130I CCWWGG 2 cut(s) 502, 675
Eco147I AGGCCT 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 10, 418
Eco57I CTGAAG 2 cut(s) 324, 336
Eco91I GGTNACC 1 cut(s) 910
EcoNI CCTNNNNNAGG 1 cut(s) 927
EcoO65I GGTNACC 1 cut(s) 910
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 502, 675
ErhI CCWWGG 2 cut(s) 502, 675
FaeI CATG 6 cut(s) 132, 299, 406, 679, 725, 947
FatI CATG 6 cut(s) 128, 295, 402, 675, 721, 943
FauI CCCGC 1 cut(s) 760
FbaI TGATCA 2 cut(s) 718, 724
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 2 cut(s) 165, 168
FokI GGATG 5 cut(s) 194, 329, 565, 863, 890
Fsp4HI GCNGC 2 cut(s) 165, 168
FspBI CTAG 3 cut(s) 63, 399, 741
GluI GCNGC 2 cut(s) 165, 168
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 2 cut(s) 29, 300
HgaI GACGC 2 cut(s) 463, 510
Hin1II CATG 6 cut(s) 132, 299, 406, 679, 725, 947
HincII GTYRAC 2 cut(s) 205, 453
HindII GTYRAC 2 cut(s) 205, 453
HindIII AAGCTT 1 cut(s) 1001
HinfI GANTC 2 cut(s) 384, 827
HphI GGTGA 3 cut(s) 134, 341, 525
Hpy166II GTNNAC 4 cut(s) 125, 205, 453, 698
Hpy188I TCNGA 5 cut(s) 418, 562, 670, 832, 973
Hpy188III TCNNGA 2 cut(s) 278, 722
Hpy8I GTNNAC 4 cut(s) 125, 205, 453, 698
Hpy99I CGWCG 1 cut(s) 457
HpyAV CCTTC 6 cut(s) 82, 221, 443, 540, 555, 767
HpyCH4III ACNGT 2 cut(s) 99, 335
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 1 cut(s) 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 454
HpyF3I CTNAG 8 cut(s) 105, 144, 437, 458, 635, 903, 917, 989
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 6 cut(s) 132, 299, 406, 679, 725, 947
Ksp22I TGATCA 2 cut(s) 718, 724
Kzo9I GATC 5 cut(s) 356, 718, 724, 776, 1006
LmnI GCTCC 1 cut(s) 985
Lsp1109I GCAGC 2 cut(s) 151, 154
LweI GCATC 1 cut(s) 130
MaeI CTAG 3 cut(s) 63, 399, 741
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 4 cut(s) 82, 329, 487, 910
MalI GATC 5 cut(s) 358, 720, 726, 778, 1008
MboI GATC 5 cut(s) 356, 718, 724, 776, 1006
MboII GAAGA 8 cut(s) 317, 329, 516, 845, 848, 851, 1006, 1008
MfeI CAATTG 2 cut(s) 388, 801
MluCI AATT 8 cut(s) 320, 388, 620, 641, 745, 790, 801, 894
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 3 cut(s) 290, 363, 887
MspR9I CCNGG 1 cut(s) 8
MunI CAATTG 2 cut(s) 388, 801
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 110, 454
NcoI CCATGG 1 cut(s) 675
NdeII GATC 5 cut(s) 356, 718, 724, 776, 1006
NlaIII CATG 6 cut(s) 132, 299, 406, 679, 725, 947
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 1 cut(s) 406
PaeI GCATGC 1 cut(s) 406
PagI TCATGA 1 cut(s) 721
PceI AGGCCT 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 384, 827
PflMI CCANNNNNTGG 1 cut(s) 352
PfoI TCCNGGA 1 cut(s) 6
PkrI GCNGC 2 cut(s) 166, 169
Psp6I CCWGG 1 cut(s) 6
PspEI GGTNACC 1 cut(s) 910
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 6
PspPI GGNCC 3 cut(s) 10, 299, 418
RsaI GTAC 4 cut(s) 273, 368, 939, 1028
RsaNI GTAC 4 cut(s) 272, 367, 938, 1027
SalI GTCGAC 1 cut(s) 451
SaqAI TTAA 3 cut(s) 290, 363, 887
SatI GCNGC 2 cut(s) 165, 168
Sau3AI GATC 5 cut(s) 356, 718, 724, 776, 1006
Sau96I GGNCC 3 cut(s) 10, 299, 418
ScrFI CCNGG 1 cut(s) 8
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 2 cut(s) 10, 418
SphI GCATGC 1 cut(s) 406
Sse9I AATT 8 cut(s) 320, 388, 620, 641, 745, 790, 801, 894
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 2 cut(s) 448, 753
SspI AATATT 2 cut(s) 863, 952
SspMI CTAG 3 cut(s) 63, 399, 741
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 502, 675
TaaI ACNGT 2 cut(s) 99, 335
TaiI ACGT 1 cut(s) 472
TaqI TCGA 2 cut(s) 452, 656
TasI AATT 8 cut(s) 320, 388, 620, 641, 745, 790, 801, 894
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 2 cut(s) 384, 827
Tru1I TTAA 3 cut(s) 290, 363, 887
Tru9I TTAA 3 cut(s) 290, 363, 887
TscAI CASTG 3 cut(s) 82, 340, 715
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 164, 167
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 8 cut(s) 510, 567, 579, 633, 635, 807, 822, 882
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 3 cut(s) 82, 340, 715
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 2 cut(s) 10, 418
XagI CCTNNNNNAGG 1 cut(s) 927
XapI RAATTY 3 cut(s) 320, 641, 894
XceI RCATGY 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 3 cut(s) 63, 399, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.